BAC Information

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BAC

Clone NameB6Ng01-077I23
Chromosome3 (Build37)
Map Location 152,537,492 - 152,681,460
singlet/doubletdoublet
Overlap geneSt6galnac5
Upstream geneLOC100040741, LOC100040597, LOC676548, Gipc2, Dnajb4, Fubp1, Nexn, C030011O14Rik, Usp33, Zzz3, Ak5, LOC100040705, Pigk, Rpl29-ps1
Downstream geneLOC100040750, St6galnac3, EG545578, Asb17, Msh4, Rabggtb, Acadm, Slc44a5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077I23.bB6Ng01-077I23.g
ACCDH893501DH893502
length1,112776
definitionDH893501|Mus musculus domesticus DNA, BAC clone: B6Ng01-077I23, 5' end.DH893502|Mus musculus domesticus DNA, BAC clone: B6Ng01-077I23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(152,680,344 - 152,681,460)(152,537,492 - 152,538,264)
sequence
gaattcattggatgtgggcagagggagcctaattggagtaattaaagcaa
gaggagattcctaataaggatggtggctgtctccctgaacggaaatgcac
cggatcacagaaaccaacaagaactctgcaggactttaggaaagcctgtt
cgttccctcactgacccctcccctctgcctcctctctccatgacaggaag
tgggtaccagcacttcgcagcttcagatctcctgtaagtgcttggctacc
atcccaaaactctctggaaagtaatcaagaatccatcaaagatctcatcc
ctaatgcagaccgagtccattggcaatcgcctagaaccagagctatggcc
actgtagatacctcctgcggttggaaggaggcgggagccagaagtgagga
gccactgcatactgcgggacagccacacacactagtggccgatttacatc
gtctttctgcaattagcgaaagacagacgtacaaatcattttgttccttt
cttgcttactctatgatggttactgttcccataaactgcttttcttcccc
ttttatttttgtaatggatgagactctcaggatatttatgatgccaacgc
catggtttttattgttttatttgtctgtttgtttttactttgtagcacaa
gcacacaagctagattgtgggtggcctctccagtgagttggggtacaatg
agagcatgctcacagcttagagtttggaaacatttcattgtattataaaa
ttacaattgaaaatgtaaaatagtaaaagaaaaaaaaagtcaatttgagg
aacataataaaggttgagttgatgcagtttccgattaaaacatcctccag
ctgttgaatgggaaatcttgagcttgcttccaaagccctaacttttattt
atattaagttttgtgtttgaaataactctacaaatactgatgaggatctt
tttcatagtgatcttttcagagtcttatagatcacccatgagagattttg
ttttcctcatgtaagaggataaaatgcgtgaaatatttttaaaagtgaag
aaatctaacgattgtgttagaaactaaccgatctctcgataactataaac
tagaattccttg
gaattccctggattctgctctcttctcagcagctgcccactaaggctctt
cagagtctgttttcctccaggcttagcattaatcagcaaataccccaggg
gctacagatagatggcctaattagcagcaggctcaaaaatctcagcacag
ggaaggctctgccccgtccccacaggtgctttattcccccgtggcctagc
aattctgttctgtccagtcaaattttctcaagtgtctggtcacggggctc
aggctagtgtggcagttaaagttgtctatcagcagagttgccaggtttga
gtggcagccttggcttctcggttgctagctgtggggctttgggcaatgac
ttagctactctgtgaaattatgttaaatggcagtaataaataagatcgcc
tctgccaaaagtcaccatgagaggggtatgggggctggagggtggcttac
tggctaagtacttgctgcccaagtatgagcactggtgttgagatgcccca
aacccatgtaaatgagaagtgctctgtggcctacttgtaatcacagcctc
agaaggcgcagacgtgggatcgcccgagcaagccgcctactgagactata
gccgtagctgggtttgattgaaagaccttgcctcaaggataagttttata
agaggaattgaggaagattcactcgccccactcacatatgcctgtacaaa
atgtgcacatgcacagtcacacacaaccacacagacacacgaacgcacac
ataagccatacacatgcaggcacaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_152680344_152681460
seq2: B6Ng01-077I23.b_51_1162 (reverse)

seq1  CAAGGAATTCTAGTATTATAGTAATAAGGAAGATCTGTTAGTTTCTTACA  50
      |||||||||||||| ||||||| ||  |  ||||| |||||||||| |||
seq2  CAAGGAATTCTAGT-TTATAGTTAT-CGAGAGATCGGTTAGTTTCTAACA  48

seq1  CATCTGTTAG-TTTCTTCTACATTTTAAAAAATTATTTCACGCATTTTAT  99
      ||   ||||| ||||||| || |||||||||  |||||||||||||||||
seq2  CAATCGTTAGATTTCTTC-AC-TTTTAAAAA--TATTTCACGCATTTTAT  94

seq1  CCTC-TACCTGA-GAAAACAAAATCTCTCAT-GGTGATACCTATAAAGAC  146
      |||| ||| ||| |||||||||||||||||| ||||||  |||| |||||
seq2  CCTCTTACATGAGGAAAACAAAATCTCTCATGGGTGAT--CTAT-AAGAC  141

seq1  TCTGAAAAGATCACTATG-AAAAGATCCTTCATCAGTAATTTTGTAGAGT  195
      |||||||||||||||||| ||||||||| |||||||||  ||||||||||
seq2  TCTGAAAAGATCACTATGAAAAAGATCC-TCATCAGTA--TTTGTAGAGT  188

seq1  TATTTCAAACACAAAACTTAATATAAATAAAAGTTAGGGCTTTGGAAGCA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCAAACACAAAACTTAATATAAATAAAAGTTAGGGCTTTGGAAGCA  238

seq1  AGCTCAAGATTT-CCATTCAACAGCTGGAGGATGTTTTAATCGGAAACTG  294
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGCTCAAGATTTCCCATTCAACAGCTGGAGGATGTTTTAATCGGAAACTG  288

seq1  CATCAACTCAACCTTTATTATGTTCCTCAAATTGACTTTTTTTTTCTTTT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAACTCAACCTTTATTATGTTCCTCAAATTGACTTTTTTTTTCTTTT  338

seq1  ACTATTTTACATTTTCAATTGTAATTTTATAATACAATGAAATGTTTCC-  393
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ACTATTTTACATTTTCAATTGTAATTTTATAATACAATGAAATGTTTCCA  388

seq1  AACTCTAAGCTGTGAGCATGCTCTCATTGTACCCCAACTCACTGGAGAGG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTAAGCTGTGAGCATGCTCTCATTGTACCCCAACTCACTGGAGAGG  438

seq1  CCACCCACAATCTAGCTTGTGTGCTTGTGCTACAAAGTAAAAACAAACAG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCACAATCTAGCTTGTGTGCTTGTGCTACAAAGTAAAAACAAACAG  488

seq1  ACAAATAAAACAATAAAAACCATGGCGTTGGCATCATAAATATCCTGAGA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATAAAACAATAAAAACCATGGCGTTGGCATCATAAATATCCTGAGA  538

seq1  GTCTCATCCATTACAAAAATAAAAGGGGAAGAAAAGCAGTTTATGGGAAC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCATCCATTACAAAAATAAAAGGGGAAGAAAAGCAGTTTATGGGAAC  588

seq1  AGTAACCATCATAGAGTAAGCAAGAAAGGAACAAAATGATTTGTACGTCT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACCATCATAGAGTAAGCAAGAAAGGAACAAAATGATTTGTACGTCT  638

seq1  GTCTTTCGCTAATTGCAGAAAGACGATGTAAATCGGCCACTAGTGTGTGT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTCGCTAATTGCAGAAAGACGATGTAAATCGGCCACTAGTGTGTGT  688

seq1  GGCTGTCCCGCAGTATGCAGTGGCTCCTCACTTCTGGCTCCCGCCTCCTT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTCCCGCAGTATGCAGTGGCTCCTCACTTCTGGCTCCCGCCTCCTT  738

seq1  CCAACCGCAGGAGGTATCTACAGTGGCCATAGCTCTGGTTCTAGGCGATT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCGCAGGAGGTATCTACAGTGGCCATAGCTCTGGTTCTAGGCGATT  788

seq1  GCCAATGGACTCGGTCTGCATTAGGGATGAGATCTTTGATGGATTCTTGA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATGGACTCGGTCTGCATTAGGGATGAGATCTTTGATGGATTCTTGA  838

seq1  TTACTTTCCAGAGAGTTTTGGGATGGTAGCCAAGCACTTACAGGAGATCT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTCCAGAGAGTTTTGGGATGGTAGCCAAGCACTTACAGGAGATCT  888

seq1  GAAGCTGCGAAGTGCTGGTACCCACTTCCTGTCATGGAGAGAGGAGGCAG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTGCGAAGTGCTGGTACCCACTTCCTGTCATGGAGAGAGGAGGCAG  938

seq1  AGGGGAGGGGTCAGTGAGGGAACGAACAGGCTTTCCTAAAGTCCTGCAGA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGGGGTCAGTGAGGGAACGAACAGGCTTTCCTAAAGTCCTGCAGA  988

seq1  GTTCTTGTTGGTTTCTGTGATCCGGTGCATTTCCGTTCAGGGAGACAGCC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGTTGGTTTCTGTGATCCGGTGCATTTCCGTTCAGGGAGACAGCC  1038

seq1  ACCATCCTTATTAGGAATCTCCTCTTGCTTTAATTACTCCAATTAGGCTC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCCTTATTAGGAATCTCCTCTTGCTTTAATTACTCCAATTAGGCTC  1088

seq1  CCTCTGCCCACATCCAATGAATTC  1117
      ||||||||||||||||||||||||
seq2  CCTCTGCCCACATCCAATGAATTC  1112

seq1: chr3_152537492_152538264
seq2: B6Ng01-077I23.g_70_845

seq1  GAATTCCCTGGATTCTGCTCTCTTCTCAGCAGCTGCCCACTAAGGCTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGGATTCTGCTCTCTTCTCAGCAGCTGCCCACTAAGGCTCTT  50

seq1  CAGAGTCTGTTTTCCTCCAGGCTTAGCATTAATCAGCAAATACCCCAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTCTGTTTTCCTCCAGGCTTAGCATTAATCAGCAAATACCCCAGGG  100

seq1  GCTACAGATAGATGGCCTAATTAGCAGCAGGCTCAAAAATCTCAGCACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAGATAGATGGCCTAATTAGCAGCAGGCTCAAAAATCTCAGCACAG  150

seq1  GGAAGGCTCTGCCCCGTCCCCACAGGTGCTTTATTCCCCCGTGGCCTAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGCTCTGCCCCGTCCCCACAGGTGCTTTATTCCCCCGTGGCCTAGC  200

seq1  AATTCTGTTCTGTCCAGTCAAATTTTCTCAAGTGTCTGGTCACGGGGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGTTCTGTCCAGTCAAATTTTCTCAAGTGTCTGGTCACGGGGCTC  250

seq1  AGGCTAGTGTGGCAGTTAAAGTTGTCTATCAGCAGAGTTGCCAGGTTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAGTGTGGCAGTTAAAGTTGTCTATCAGCAGAGTTGCCAGGTTTGA  300

seq1  GTGGCAGCCTTGGCTTCTCGGTTGCTAGCTGTGGGGCTTTGGGCAATGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAGCCTTGGCTTCTCGGTTGCTAGCTGTGGGGCTTTGGGCAATGAC  350

seq1  TTAGCTACTCTGTGAAATTATGTTAAATGGCAGTAATAAATAAGATCGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTACTCTGTGAAATTATGTTAAATGGCAGTAATAAATAAGATCGCC  400

seq1  TCTGCCAAAAGTCACCATGAGAGGGGTATGGGGGCTGGAGGGTGGCTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCAAAAGTCACCATGAGAGGGGTATGGGGGCTGGAGGGTGGCTTAC  450

seq1  TGGCTAAGTACTTGCTGCCCAAGTATGAGCACTGGTGTTGAGATGCCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAAGTACTTGCTGCCCAAGTATGAGCACTGGTGTTGAGATGCCCCA  500

seq1  AACCCATGTAAATGAGAAGTGCTCTGTGGCCTACTTGTAATCACAGCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCATGTAAATGAGAAGTGCTCTGTGGCCTACTTGTAATCACAGCCTC  550

seq1  AGAAGGCGCAGACGTGGGATCGCCCGAGCAAGCCGCCTACTGAGACTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCGCAGACGTGGGATCGCCCGAGCAAGCCGCCTACTGAGACTATA  600

seq1  GCCGTAGCTGGGTTTGATTGAAAGACCTTGCCTCAAGGATAAG-TTTATA  649
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GCCGTAGCTGGGTTTGATTGAAAGACCTTGCCTCAAGGATAAGTTTTATA  650

seq1  AGAGGAATTGAGGAAGATTCACTCG-CCCACGCACATATGCCTGTAC-AA  697
      ||||||||||||||||||||||||| ||||| ||||||||||||||| ||
seq2  AGAGGAATTGAGGAAGATTCACTCGCCCCACTCACATATGCCTGTACAAA  700

seq1  ATGTGCACATGCACAGTCACACACAACCACACAGACACACGAACGCACAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCACATGCACAGTCACACACAACCACACAGACACACGAACGCACAC  750

seq1  ATAAGCCATACACATGCAGGCACACA  773
      ||||||||||||||||||||||||||
seq2  ATAAGCCATACACATGCAGGCACACA  776