BAC Information

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BAC

Clone NameB6Ng01-077M01
Chromosome1 (Build37)3 (Build37)
Map Location 101,465,969 - 101,467,03028,155,135 - 28,155,258
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG666182
Downstream geneC230078M14Rik, LOC633295, EG666200
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077M01.bB6Ng01-077M01.g
ACCDH893644DH893645
length1,056535
definitionDH893644|Mus musculus domesticus DNA, BAC clone: B6Ng01-077M01, 5' end.DH893645|Mus musculus domesticus DNA, BAC clone: B6Ng01-077M01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(101,465,969 - 101,467,030)(28,155,135 - 28,155,258)
sequence
gaattccttgccctttcagtttctacaaacaacaaagccaggattttaga
tcccattgtctcatatattcttaataaacacatatccatgcctgaatgat
ttcctaaggtatcccagcaaccaaaacactcctctcagtttcctaacact
agatttggagaatccataaattgaatgataatggttcagttctttttata
caaagctcttctttaaaaaaaaaaaaaaaagatattcagtcaagttcagg
agctgtttagagcacatctcataatagttgtcctgttagggcttagtatc
tggacaccttggaataagcaattgtaattccatttctgtttacatgacca
cctcagagggcaggaagaaagaatgtagtatatcgggaaacataaaagca
tcccagaaggttcactgtgaaacgtttgattcacaaatacctgtaattgt
cactcacaaggggtatgagaagattgtttggtgggcaaagaacttgttgt
acaatcaaatctgagggaccaagttaggatcctcagtgacttgctaaatt
ttgccatgacagccatcatcagtagtccaggtgagaagtaagggggagaa
gtaaatatttggaactcactgactgatgagcttcaggctcattgtgtctc
tgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaggtggtggacactgtt
caagggacacacctgatattgacctctggcctccacatattcaagtgtac
aaacacataaacttttaaactgtgtataataatgtctttcaagctctaag
attaaatataagtaatgagtcagagaagtctagaaaatctaaacagaagg
aaattcttgctctctttgcatgtgaaaggagggaaaggattatgcagaca
gaatcactggagagacaggaatggttagagtccctcagcaagtaaaagtg
tttggtcccaatccagaggaacatgttcatcccctgggattcatatagtg
aaagagagaatcactcttgaaagtagtctctgattaaacacagaaccaat
acacag
caggctggtgagacaggagtgggtgggtggattggtggggatgcactctc
acagaagcagagggagctgataggatatttctggaggggaaaccgggaaa
ggagataacatttgaaatgtcaataaataaaatatctaaagaaaaacaaa
aaatattaaaaagttaaaaaaaaaaagaatcatccttgagttcttaaatg
atgtcacattctttctctgtctctctttcagtgtctctgtctctctttcc
tctctgttttttctgtttgactctgtgtgtttgtgtctctgtgtgtgttt
tttgtatgtgtctatgtgtgtatttttgtatgtgtgtgtgcatgtgtata
tctgtgcatttgtatgtgtgttttttgtgtgagtttgtgtgtttgtgtat
atgaatcattttgtgtatctttatgcacctttgtgtgtacttgtgcatat
cattatgtgtatgtttatataccatgttgtgtttgtgtttgggtgtgact
gtgcttgtatgtgtgtgtatatggctgtctgtgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_101465969_101467030
seq2: B6Ng01-077M01.b_46_1101

seq1  GAATTCCTTGCCCTTTCAGTTTCTACAAACAACAAAGCCAGGATTTTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGCCCTTTCAGTTTCTACAAACAACAAAGCCAGGATTTTAGA  50

seq1  TCCCATTGTCTCATATATTCTTAATAAACACATATCCATGCCTGAATGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTGTCTCATATATTCTTAATAAACACATATCCATGCCTGAATGAT  100

seq1  TTCCTAAGGTATCCCAGCAACCAAAACACTCCTCTCAGTTTCCTAACACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAAGGTATCCCAGCAACCAAAACACTCCTCTCAGTTTCCTAACACT  150

seq1  AGATTTGGAGAATCCATAAATTGAATGATAATGGTTCAGTTCTTTTTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTGGAGAATCCATAAATTGAATGATAATGGTTCAGTTCTTTTTATA  200

seq1  CAAAGCTCTTCTTTAAAAAAAAAAAAAAAAGATATTCAGTCAAGTTCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTCTTCTTTAAAAAAAAAAAAAAAAGATATTCAGTCAAGTTCAGG  250

seq1  AGCTGTTTAGAGCACATCTCATAATAGTTGTCCTGTTAGGGCTTAGTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTTTAGAGCACATCTCATAATAGTTGTCCTGTTAGGGCTTAGTATC  300

seq1  TGGACACCTTGGAATAAGCAATTGTAATTCCATTTCTGTTTACATGACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACACCTTGGAATAAGCAATTGTAATTCCATTTCTGTTTACATGACCA  350

seq1  CCTCAGAGGGCAGGAAGAAAGAATGTAGTATATCGGGAAACATAAAAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGAGGGCAGGAAGAAAGAATGTAGTATATCGGGAAACATAAAAGCA  400

seq1  TCCCAGAAGGTTCACTGTGAAACGTTTGATTCACAAATACCTGTAATTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGAAGGTTCACTGTGAAACGTTTGATTCACAAATACCTGTAATTGT  450

seq1  CACTCACAAGGGGTATGAGAAGATTGTTTGGTGGGCAAAGAACTTGTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACAAGGGGTATGAGAAGATTGTTTGGTGGGCAAAGAACTTGTTGT  500

seq1  ACAATCAAATCTGAGGGACCAAGTTAGGATCCTCAGTGACTTGCTAAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCAAATCTGAGGGACCAAGTTAGGATCCTCAGTGACTTGCTAAATT  550

seq1  TTGCCATGACAGCCATCATCAGTAGTCCAGGTGAGAAGTAAGGGGGAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCATGACAGCCATCATCAGTAGTCCAGGTGAGAAGTAAGGGGGAGAA  600

seq1  GTAAATATTTGGAACTCACTGACTGATGAGCTTCAGGCTCATTGTGTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATATTTGGAACTCACTGACTGATGAGCTTCAGGCTCATTGTGTCTC  650

seq1  TGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGTGGTGGACACTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGTGGTGGACACTGTT  700

seq1  CAAGGGACACACCTGATATTGACCTCTGGCCTCCACATATTCAAGTGTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGACACACCTGATATTGACCTCTGGCCTCCACATATTCAAGTGTAC  750

seq1  AAACACATAAACTTTTAAACTGTGTATAATAATGTCTTTCAAGCTCTAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACATAAACTTTTAAACTGTGTATAATAATGTCTTTCAAGCTCTAAG  800

seq1  ATTAAATATAAGTAATGAGTCAGAGAAGTCTAGAAAATCTAAACAGAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATATAAGTAATGAGTCAGAGAAGTCTAGAAAATCTAAACAGAAGG  850

seq1  AAATTCTTGCTCTCTTTGCATGTGAAAGGAGGGAAAGGATTATGCAGACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTTGCTCTCTTTGCATGTGAAAGGAGGGAAAGGATTATGCAGACA  900

seq1  GAATCACTGGAGAGACAGGAATGGTTAGAGTCCCTCAGCAAGTAAAAGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCACTGGAGAGACAGGAATGGTTAGAGTCCCTCAGCAAGTAAAAGTG  950

seq1  TTTGGTCCCAATCCAGAGGAACAATGTTCCATCCCCTGGGATTCATATAG  1000
      |||||||||||||||||||||| ||||| |||||||||||||||||||||
seq2  TTTGGTCCCAATCCAGAGGAAC-ATGTT-CATCCCCTGGGATTCATATAG  998

seq1  TGAAAGGAGAGAATCAACTCTTGAAAGTTGGTCTCTGATTTATACACAGA  1050
      ||||| ||||||||| ||||||||||| | |||||||| ||| |||||||
seq2  TGAAA-GAGAGAATC-ACTCTTGAAAG-TAGTCTCTGA-TTAAACACAGA  1044

seq1  ACACATACACAG  1062
      ||  ||||||||
seq2  ACCAATACACAG  1056

seq1: chr3_28155135_28155258
seq2: B6Ng01-077M01.g_231_327

seq1  AAAAGTTAAAAAAAAAATCTCACATATGTGACTGCAGGTCAAACCAATCC  50
      |||||||||||||||||                  ||    || | ||||
seq2  AAAAGTTAAAAAAAAAA------------------AG----AATC-ATCC  27

seq1  ATTGCAATACCTATATCCATCACTGAATCATTCTCTCTTTCTCTGTCTCT  100
       ||| | | | || ||  ||  |  | || |||||| | ||||| ||  |
seq2  -TTG-AGTTCTTAAAT-GATGTCACATTCTTTCTCTGTCTCTCTTTCAGT  74

seq1  CTCTCTGTCTCTCTCTCCCTCTCT  124
       ||||||||||||| | |||||||
seq2  GTCTCTGTCTCTCT-TTCCTCTCT  97