BAC Information

Click to search

BAC

Clone NameB6Ng01-077O11
Chromosome3 (Build37)
Map Location 54,411,190 - 54,619,769
singlet/doubletdoublet
Overlap geneB020017C02Rik, D3Ertd300e, Exosc8, Alg5, Smad9, Rfxap, LOC545524
Upstream geneFrem2, Ppia-ps3_416.1, LOC621155, Ufm1, EG666444, LOC100039937, Trpc4, Postn, LOC100039951, LOC434807
Downstream gene6030405A18Rik, Ccna1, 4931419H13Rik, Spg20, A730037C10Rik, Sohlh2, Dclk1, Mab21l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077O11.bB6Ng01-077O11.g
ACCDH893757DH893758
length6671,124
definitionDH893757|Mus musculus domesticus DNA, BAC clone: B6Ng01-077O11, 5' end.DH893758|Mus musculus domesticus DNA, BAC clone: B6Ng01-077O11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,411,190 - 54,411,856)(54,618,632 - 54,619,769)
sequence
gaattcacaatgccgttaaggccaaggctgtataagtgtgtgacagtggc
agctttcctatggtttgtccaatacttatgctcacaacagactcccactc
tcacattaacatacacatgtgctaatcgcttatctgtcctggccagggaa
gcatatattcattaataactgttgcttggagcaggtgtggactccaatcc
aaagtcttccagtctgtttctttctatttcctgcctaccttccacgctgg
ctcagaacctcacccttccttaccttgcaagaccttccttgcccagactc
cagtccattgcacataatatcaccagaactgtatttctaaaacataaatg
tgtctggattcatcatcctttgaagtgtttgtggtactttagttgaaacc
cgatgccaaggatagtagacatacctgtcatactagcactctgaaggctg
aagctggaggattgccaggacttggaggttaacttgggttatcaaccagg
tcatctaaaactactatatgtattgatgtatgtgcatagtatatgtttac
atttgtgtgcctgtccatgaagttgcatgtgcacatagagggcagaggtc
attgctgaatgtcttcctctatcactctccactttataattttaaattgc
atctacatagtgtgtgt
gaattccagggagtggccctgaccaatgcccggcctggtcagtgtttaat
taaaggctttcttcagtttgactcaaatggtggaactcgtttttcctttg
gtgaattgaaggattgacaaaggcccactcagtgtgagtagtagcactcc
ctgggccagaattctttgctatatgagaaggaagaagtagtctgagcaca
gatatttgtttcttcttttaaaaatcattttaaatttaattattattatt
attttaatgttacagggactagagaaatggttcactatttgttgttccgg
aggacccaagtgtgattcctccttcgtccacatggtggctcacaaccatc
tataagtccagtctcagggggtctcaggggatctggcgccctctcctgac
ctctacagacaccaggcaaacattcagacaaacacacgtaaaattaaaaa
atagatctttaaaattaaataaacaaaagggaatttcattcacactatga
acctatatgattttaagtttaaccaatgaaaaaagaatcaaattattaaa
atacaaagatgataaaatatatctttcaagaatagttgataaagtcctcc
ttcatactgtatagttattttaacttgtgcttttattaatacatatattt
tcaaatgcctaaaaatgttttttaaaaaacatatcaatgagtacatatgc
gcctagatttagcactttgtaaatcatcactgcttgatatgtgtgtgtgt
gcgtgtgtgtgtcagctacatcaactcagtcaaatgcagtcatcataaca
agtcactctcaagttgttagtcgtcagtcttataaacttaaagacaatct
cttctgtaaccaaatgggattatacacctttgaaaattcatgatggttat
ctactcccatctgtcttttagatccacattgggattttactgattgcttc
cacattctgggtttagtatttccctctcttgtgtcctttcaacaggagtg
ggttctaagattattcacactcgcgctgccatatttttggcaagcgtcat
cgcgcatatgccccactttgaccaatttccatttcaatcgatcttggtct
ctcctctggctaaggctggagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_54411190_54411856
seq2: B6Ng01-077O11.b_48_714

seq1  GAATTCACAATGCCGTTAAGGCCAAGGCTGTATAAGTGTGTGACAGTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAATGCCGTTAAGGCCAAGGCTGTATAAGTGTGTGACAGTGGC  50

seq1  AGCTTTCCTATGGTTTGTCCAATACTTATGCTCACAACAGACTCCCACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCCTATGGTTTGTCCAATACTTATGCTCACAACAGACTCCCACTC  100

seq1  TCACATTAACATACACATGTGCTAATCGCTTATCTGTCCTGGCCAGGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTAACATACACATGTGCTAATCGCTTATCTGTCCTGGCCAGGGAA  150

seq1  GCATATATTCATTAATAACTGTTGCTTGGAGCAGGTGTGGACTCCAATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATATTCATTAATAACTGTTGCTTGGAGCAGGTGTGGACTCCAATCC  200

seq1  AAAGTCTTCCAGTCTGTTTCTTTCTATTTCCTGCCTACCTTCCACGCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTTCCAGTCTGTTTCTTTCTATTTCCTGCCTACCTTCCACGCTGG  250

seq1  CTCAGAACCTCACCCTTCCTTACCTTGCAAGACCTTCCTTGCCCAGACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAACCTCACCCTTCCTTACCTTGCAAGACCTTCCTTGCCCAGACTC  300

seq1  CAGTCCATTGCACATAATATCACCAGAACTGTATTTCTAAAACATAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCATTGCACATAATATCACCAGAACTGTATTTCTAAAACATAAATG  350

seq1  TGTCTGGATTCATCATCCTTTGAAGTGTTTGTGGTACTTTAGTTGAAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGGATTCATCATCCTTTGAAGTGTTTGTGGTACTTTAGTTGAAACC  400

seq1  CGATGCCAAGGATAGTAGACATACCTGTCATACTAGCACTCTGAAGGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGCCAAGGATAGTAGACATACCTGTCATACTAGCACTCTGAAGGCTG  450

seq1  AAGCTGGAGGATTGCCAGGACTTGGAGGTTAACTTGGGTTATCAACCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGAGGATTGCCAGGACTTGGAGGTTAACTTGGGTTATCAACCAGG  500

seq1  TCATCTAAAACTACTATATGTATTGATGTATGTGCATAGTATATGTTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTAAAACTACTATATGTATTGATGTATGTGCATAGTATATGTTTAC  550

seq1  ATTTGTGTGCCTGTCCATGAAGTTGCATGTGCACATAGAGGGCAGAGGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGTGCCTGTCCATGAAGTTGCATGTGCACATAGAGGGCAGAGGTC  600

seq1  ATTGCTGAATGTCTTCCTCTATCACTCTCCACTTTATAATTTTAAATTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTGAATGTCTTCCTCTATCACTCTCCACTTTATAATTTTAAATTGC  650

seq1  ATCTACATAGTGTGTGT  667
      |||||||||||||||||
seq2  ATCTACATAGTGTGTGT  667

seq1: chr3_54618632_54619769
seq2: B6Ng01-077O11.g_69_1192 (reverse)

seq1  TCTCTCCAGCCTTAGCAGGAGGAGAGAACACAGGATCTGATTGAAAAATG  50
      ||||||||||||||||  |||||||||   || |||| |||||  |||||
seq2  TCTCTCCAGCCTTAGCCAGAGGAGAGA--CCAAGATC-GATTG--AAATG  45

seq1  GGAAGTGGTACAAAGTGGGGGCATTATGCGCGATGACGCTTGCCAAAAAT  100
      | || |||| |||||| |||||| ||||||||||||||||||||||||||
seq2  GAAATTGGT-CAAAGT-GGGGCA-TATGCGCGATGACGCTTGCCAAAAAT  92

seq1  GT-GCAGCGCGAGTGTGATTAATTCTTTAGAACTCACTTCCTGTTTACAG  149
       | ||||||||||||||| ||||   ||||||| ||| ||||||| | | 
seq2  ATGGCAGCGCGAGTGTGAATAAT--CTTAGAACCCAC-TCCTGTTGA-AA  138

seq1  GGACACAAGAGAGGGAAATACTAAACCCCAGGATGTGGAAGCAATCAGTA  199
      ||||||||||||||||||||||||| ||||| ||||||||||||||||||
seq2  GGACACAAGAGAGGGAAATACTAAA-CCCAGAATGTGGAAGCAATCAGTA  187

seq1  AAATTCCCAATGTGGATTCTAAAAGACAGATGGGAGTAGATAACCATCAT  249
      ||| |||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAA-TCCCAATGTGGA-TCTAAAAGACAGATGGGAGTAGATAACCATCAT  235

seq1  GAATTTTCAAAGGTGTATTAATCCCATTTGGTTACAGAAGAGATTGTCCT  299
      ||||||||||||||||| |||||||||||||||||||||||||||||| |
seq2  GAATTTTCAAAGGTGTA-TAATCCCATTTGGTTACAGAAGAGATTGTCTT  284

seq1  TAAGTTTATAAGACTGACGACTAACAACTTGAGAGTGACTTGTTATGATG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTATAAGACTGACGACTAACAACTTGAGAGTGACTTGTTATGATG  334

seq1  ACTGCATTTGACTGAGTTGATGTAGCTGACACACACACGCACACACACAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCATTTGACTGAGTTGATGTAGCTGACACACACACGCACACACACAC  384

seq1  ATATCAAGCAGTGATGATTTAC-AAGTGCTAAATCTAGGCGCATATGTAC  448
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATATCAAGCAGTGATGATTTACAAAGTGCTAAATCTAGGCGCATATGTAC  434

seq1  TCATTGATATGTTTTTTAAAAAACATTTTTAGGCATTTGAAAATATATGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGATATGTTTTTTAAAAAACATTTTTAGGCATTTGAAAATATATGT  484

seq1  ATTAATAAAAGCACAAGTTAAAATAACTATACAGTATGAAGGAGGACTTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATAAAAGCACAAGTTAAAATAACTATACAGTATGAAGGAGGACTTT  534

seq1  ATCAACTATTCTTGAAAGATATATTTTATCATCTTTGTATTTTAATAATT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACTATTCTTGAAAGATATATTTTATCATCTTTGTATTTTAATAATT  584

seq1  TGATTCTTTTTTCATTGGTTAAACTTAAAATCATATAGGTTCATAGTGTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTTTTTTCATTGGTTAAACTTAAAATCATATAGGTTCATAGTGTG  634

seq1  AATGAAATTCCCTTTTGTTTATTTAATTTTAAAGATCTATTTTTTAATTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAATTCCCTTTTGTTTATTTAATTTTAAAGATCTATTTTTTAATTT  684

seq1  TACGTGTGTTTGTCTGAATGTTTGCCTGGTGTCTGTAGAGGTCAGGAGAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTGTGTTTGTCTGAATGTTTGCCTGGTGTCTGTAGAGGTCAGGAGAG  734

seq1  GGCACCAGATCCCCTGAGACCCCCTGAGACTGGACTTATAGATGGTTGTG  798
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCCAGATCCCCTGAGACCCCCTGAGACTGGACTTATAGATGGTTGTG  784

seq1  AGCCACCATGTGGACGAAGGAGGAATCACACTTGGGTCCTCCGGAACAAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCATGTGGACGAAGGAGGAATCACACTTGGGTCCTCCGGAACAAC  834

seq1  AAATAGTGAACCATTTCTCTAGTCCCTGTAACATTAAAATAATAATAATA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTGAACCATTTCTCTAGTCCCTGTAACATTAAAATAATAATAATA  884

seq1  ATTAAATTTAAAATGATTTTTAAAAGAAGAAACAAATATCTGTGCTCAGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATTTAAAATGATTTTTAAAAGAAGAAACAAATATCTGTGCTCAGA  934

seq1  CTACTTCTTCCTTCTCATATAGCAAAGAATTCTGGCCCAGGGAGTGCTAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTCTTCCTTCTCATATAGCAAAGAATTCTGGCCCAGGGAGTGCTAC  984

seq1  TACTCACACTGAGTGGGCCTTTGTCAATCCTTCAATTCACCAAAGGAAAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCACACTGAGTGGGCCTTTGTCAATCCTTCAATTCACCAAAGGAAAA  1034

seq1  ACGAGTTCCACCATTTGAGTCAAACTGAAGAAAGCCTTTAATTAAACACT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGTTCCACCATTTGAGTCAAACTGAAGAAAGCCTTTAATTAAACACT  1084

seq1  GACCAGGCCGGGCATTGGTCAGGGCCACTCCCTGGAATTC  1138
      ||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGGCCGGGCATTGGTCAGGGCCACTCCCTGGAATTC  1124