BAC Information

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BAC

Clone NameB6Ng01-078A12
Chromosome3 (Build37)
Map Location 106,952,686 - 107,103,365
singlet/doubletdoublet
Overlap geneKcna10, Gm131, A630076J17Rik, Prok1, Hbxip, Slc16a4
Upstream geneChi3l3, Chi3l4, EG624696, BC051070, 2010016I18Rik, Dennd2d, Cept1, Tmem77, LOC100043608, 4933421E11Rik, Cd53, Olfr266, Kcna3, AI504432, Kcna2
Downstream geneRbm15, LOC383901, Kcnc4, Slc6a17, Ubl4b, Alx3, 6330569M22Rik, Ahcyl1, Csf1, LOC280047, Eps8l3, Gstm5, LOC671031, Gstm7, Gstm6, LOC668674, Gstm3, LOC624701, Gstm2, Gstm1, LOC100043641, Gstm4, Ampd2, Gnat2, Gnai3, Gpr61, LOC100043654, Amigo1, Cyb561d1, Atxn7l2, Sypl2, LOC668686, Psma5, Sort1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078A12.bB6Ng01-078A12.g
ACCDH893847DH893848
length1,1941,074
definitionDH893847|Mus musculus domesticus DNA, BAC clone: B6Ng01-078A12, 5' end.DH893848|Mus musculus domesticus DNA, BAC clone: B6Ng01-078A12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,952,686 - 106,953,879)(107,102,280 - 107,103,365)
sequence
gaattccaatctctaaagtgttcttttgaccacagattcactcagttcct
cgaaaacaagccaaagggttagggatcagtagaaaaaaaaaagaagaaat
gtgcccccacctttgttatgtccaatcatgaagaaatttggggctcataa
gatacatgccagagaagccagtaacagggaagagagatttctgaatgaaa
gtaggtgacgctgcgactcagacatgaatttcactggacactgtggagag
cagggttgcagatcagtaagcaaggatgtcattaaggcatagagcatgga
gggggttcacagaggctactcaaaaacagcaggccaggctgcagctaggg
tgtgtccactgagcctcatgagtccttataatcttagaccactgtgccac
atttatgaaacttctttctcaccgtgaagaaatctctcttgttgattata
ctcaacaagagaggccagacaggcaaatggagcacaaactaaaagagcac
cacccaggtttattcagacttacagcctacagtgccccaagtccctgaga
aacaccttcaaagagaccagctgtctcctttgcccttgatcttaggaagc
atagccctatatcactgtacattaactgtatccttatgctctgggggcca
attctgccctctgtgtggcctctaaaaactccaaattccgtggtgtagtc
ctcgtttttaggcccacttacagatatattcctgtactcctctatctttc
agcctgctacttttgagctgatcctaatggccacttcttgcaacctcaat
ccgtttatcaagtagtctgatctaatttctgcactctttatccctgcctc
tgggactgctcccagaaatccacacaactagctgcccttccccacatcct
ggctccccactctggtattgggctgggcctgtcacataattctcacactc
tcattagcctgggcctcagcaggctactcagctacatcaatgaagttact
catcactaattgccttcactaccaacaatttctggtaacctctgttttag
gtaactcctcctcttctgccatttcactcaaccactacccagaccgtttt
tatgtagatacttaaaggggagggtcgttctctaatgactgaacagaact
tttgggtcaggattaggaacttacagctataagttgggttcccc
gaattctagtcatctggaagaacagcaaaatgcctttaactgcttagcca
tctctccttccctgcctcccaaatttaactgaaaccacttaggtctattg
acaatatacatggtgcaaaaatgtaatactttagatattggaaaaccagg
aaattgaaaagaggttattttttgctaaaggacaagttaggggattggga
agtgggtaataatctgatggcacaaatttacattttaaataggtatttta
aatatattgtgactggattttggtgtagggaatatagaactagctgtcag
gaatcatgggggaaaacgtgttagaaaaagccattcggactttttttccc
ccttgaagacatgctagtcttgcctttcttgcctttgatgtgagtacttg
gttggttttaggatgtccagaacaaagccatgacttagtgtttctggaga
gaacaagcttgtctcggcttttctagaggcgtatcagctggaggttccca
tttaccgtggaactactgaatagtcctctacatagggaagagtagtcaaa
actactataaaggtagaaatagacataaatacatttcactagaatactta
agatagaaaattatgaaatggctttgtgaaaattcctagttgataatata
tataaaaattgtctggtaggaacataatctttttacaaatagtccattta
tgcttagatttgtttttaaatgcagagttttgttttgtttttttgtttgt
ttgtttgtttgttttgttttctttggatgctttagtgaaaagattggaaa
aaaagagaaaacattgttttcctaagcttttactgcacagcatttctagt
tgcacctcatgcatggaattctgaaaagagatttcttgagttgggctggc
aaataggaagatttctccttataggatggcatgtgttcccattaaatatg
ttatttccctctctcatcttcagtgctacatggtgtgcctggggcctgta
tcccagcgttgcatgagtctagacctgcctgtgtgtcttctagtgacttt
ggatctaggagaagaatttattaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_106952686_106953879
seq2: B6Ng01-078A12.b_45_1238

seq1  GAATTCCAATCTCTAAAGTGTTCTTTTGACCACAGATTCACTCAGTTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATCTCTAAAGTGTTCTTTTGACCACAGATTCACTCAGTTCCT  50

seq1  CGAAAACAAGCCAAAGGGTTAGGGATCAGTAGAAAAAAAAAAGAAGAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAACAAGCCAAAGGGTTAGGGATCAGTAGAAAAAAAAAAGAAGAAAT  100

seq1  GTGCCCCCACCTTTGTTATGTCCAATCATGAAGAAATTTGGGGCTCATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCCCACCTTTGTTATGTCCAATCATGAAGAAATTTGGGGCTCATAA  150

seq1  GATACATGCCAGAGAAGCCAGTAACAGGGAAGAGAGATTTCTGAATGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACATGCCAGAGAAGCCAGTAACAGGGAAGAGAGATTTCTGAATGAAA  200

seq1  GTAGGTGACGCTGCGACTCAGACATGAATTTCACTGGACACTGTGGAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTGACGCTGCGACTCAGACATGAATTTCACTGGACACTGTGGAGAG  250

seq1  CAGGGTTGCAGATCAGTAAGCAAGGATGTCATTAAGGCATAGAGCATGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTGCAGATCAGTAAGCAAGGATGTCATTAAGGCATAGAGCATGGA  300

seq1  GGGGGTTCACAGAGGCTACTCAAAAACAGCAGGCCAGGCTGCAGCTAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTTCACAGAGGCTACTCAAAAACAGCAGGCCAGGCTGCAGCTAGGG  350

seq1  TGTGTCCACTGAGCCTCATGAGTCCTTATAATCTTAGACCACTGTGCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCACTGAGCCTCATGAGTCCTTATAATCTTAGACCACTGTGCCAC  400

seq1  ATTTATGAAACTTCTTTCTCACCGTGAAGAAATCTCTCTTGTTGATTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGAAACTTCTTTCTCACCGTGAAGAAATCTCTCTTGTTGATTATA  450

seq1  CTCAACAAGAGAGGCCAGACAGGCAAATGGAGCACAAACTAAAAGAGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACAAGAGAGGCCAGACAGGCAAATGGAGCACAAACTAAAAGAGCAC  500

seq1  CACCCAGGTTTATTCAGACTTACAGCCTACAGTGCCCCAAGTCCCTGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGGTTTATTCAGACTTACAGCCTACAGTGCCCCAAGTCCCTGAGA  550

seq1  AACACCTTCAAAGAGACCAGCTGTCTCCTTTGCCCTTGATCTTAGGAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCTTCAAAGAGACCAGCTGTCTCCTTTGCCCTTGATCTTAGGAAGC  600

seq1  ATAGCCCTATATCACTGTACATTAACTGTATCCTTATGCTCTGGGGGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCCTATATCACTGTACATTAACTGTATCCTTATGCTCTGGGGGCCA  650

seq1  ATTCTGCCCTCTGTGTGGCCTCTAAAAACTCCAAATTCCGTGGTGTAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGCCCTCTGTGTGGCCTCTAAAAACTCCAAATTCCGTGGTGTAGTC  700

seq1  CTCGTTTTTAGGCCCACTTACAGATATATTCCTGTACTCCTCTATCTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTTTTTAGGCCCACTTACAGATATATTCCTGTACTCCTCTATCTTTC  750

seq1  AGCCTGCTACTTTTGAGCTGATCCTAATGGCCACTTCTTGCAACCTCAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGCTACTTTTGAGCTGATCCTAATGGCCACTTCTTGCAACCTCAAT  800

seq1  CCGTTTATCAAGTAGTCTGATCTAATTTCTGCACTCTTTATCCCTGCCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTTATCAAGTAGTCTGATCTAATTTCTGCACTCTTTATCCCTGCCTC  850

seq1  TGGGACTGCTCCCAG-AATCCACACAACTAGCTGCCC-TCCCCACATCCT  898
      ||||||||||||||| ||||||||||||||||||||| ||||||||||||
seq2  TGGGACTGCTCCCAGAAATCCACACAACTAGCTGCCCTTCCCCACATCCT  900

seq1  GGCTCCCCACTCTGGTATT-GGCTGGGCCTGTCACATAATTCTCACACTC  947
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GGCTCCCCACTCTGGTATTGGGCTGGGCCTGTCACATAATTCTCACACTC  950

seq1  TCATTAGCCTGGGCCTCAGCAGGGCTACTCAGCTACATCAATGAAGTTAC  997
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TCATTAGCCTGGGCCTCAGCA-GGCTACTCAGCTACATCAATGAAGTTAC  999

seq1  TCATCACTAATTGCCTTCACTACCAAACAAATTTCTGGTACCCTCTGTTT  1047
      ||||||||||||||||||||||||||   ||||||||||| |||||||||
seq2  TCATCACTAATTGCCTTCACTACCAA--CAATTTCTGGTAACCTCTGTTT  1047

seq1  TAGGGTAAACTCTCCTCTCCTGCCATTTCAACTCAAACCACTACCCAGAC  1097
      || |||||   ||||||| |||||||||| |||| |||||||||||||||
seq2  TA-GGTAACTCCTCCTCTTCTGCCATTTC-ACTC-AACCACTACCCAGAC  1094

seq1  CGTTTTTATGTTAGATAC-TAAAGGGGAGGGTCGTTCTCCAATGACAG-A  1145
      |||||||||| ||||||| |||||||||||||||||||| |||||| | |
seq2  CGTTTTTATG-TAGATACTTAAAGGGGAGGGTCGTTCTCTAATGACTGAA  1143

seq1  CAG-ACTTTGGGGTCAGGA-TAGAGACTTACAGCTTATAGTTTGGTTCCC  1193
      ||| ||||| ||||||||| |||  ||||||||||   |||| |||||||
seq2  CAGAACTTTTGGGTCAGGATTAGGAACTTACAGCTATAAGTTGGGTTCCC  1193

seq1  C  1194
      |
seq2  C  1194

seq1: chr3_107102280_107103365
seq2: B6Ng01-078A12.g_70_1143 (reverse)

seq1  TTAATAAATTCCTCTTCCTAGATCCAAGGTCACTATGTATGACACACTAG  50
      ||||||||||| || |||||||||||| |||||||   | |||||||  |
seq2  TTAATAAATTCTTC-TCCTAGATCCAAAGTCACTA--GAAGACACACAGG  47

seq1  CAGGTCTAGAACTCATGACAACGCTGGGATTACAGGCCACCAGGCACCAC  100
      ||||||||| ||||||| ||||||||||| |||||||| ||||||| |||
seq2  CAGGTCTAG-ACTCATG-CAACGCTGGGA-TACAGGCC-CCAGGCA-CAC  92

seq1  CATGTAGCACTGAAGATGAGAGAGGGAAATAAACATATTTAATGGGAACA  150
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CATGTAGCACTGAAGATGAGAGAGGGAAAT-AACATATTTAATGGGAACA  141

seq1  CATGCCATTCCTTATAAGGAAGAAATCTTCCTATTTGCCAGCCCAACTCA  200
      ||||||||  | ||||||| ||||||||||||||||||||||||||||||
seq2  CATGCCAT--CCTATAAGG-AGAAATCTTCCTATTTGCCAGCCCAACTCA  188

seq1  AGAATTCTCTTTTCAGAATTCCATGCATGAGGTGCAACTAGAAATGCTGT  250
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCTCTTTTCAGAATTCCATGCATGAGGTGCAACTAGAAATGCTGT  238

seq1  GCAGTAAAAGCTTAGGAAAACAATGTTTTCTCTTTTTTTCCAATCTTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAAAAGCTTAGGAAAACAATGTTTTCTCTTTTTTTCCAATCTTTTC  288

seq1  ACTAAAGCATCCAAAGAAAACAAAACAAACAAACAAACAAACAAAAAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAGCATCCAAAGAAAACAAAACAAACAAACAAACAAACAAAAAAAC  338

seq1  AAAACAAAACTCTGCATTTAAAAACAAATCTAAGCATAAATGGACTATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAACTCTGCATTTAAAAACAAATCTAAGCATAAATGGACTATTT  388

seq1  GTAAAAAGATTATGTTCCTACCAGACAATTTTTATATATATTATCAACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAAGATTATGTTCCTACCAGACAATTTTTATATATATTATCAACTA  438

seq1  GGAATTTTCACAAAGCCATTTCATAATTTTCTATCTTAAGTATTCTAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTTTCACAAAGCCATTTCATAATTTTCTATCTTAAGTATTCTAGTG  488

seq1  AAATGTATTTATGTCTATTTCTACCTTTATAGTAGTTTTGACTACTCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTATTTATGTCTATTTCTACCTTTATAGTAGTTTTGACTACTCTTC  538

seq1  CCTATGTAGAGGACTATTCAGTAGTTCCACGGTAAATGGGAACCTCCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGTAGAGGACTATTCAGTAGTTCCACGGTAAATGGGAACCTCCAGC  588

seq1  TGATACGCCTCTAGAAAAGCCGAGACAAGCTTGTTCTCTCCAGAAACACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACGCCTCTAGAAAAGCCGAGACAAGCTTGTTCTCTCCAGAAACACT  638

seq1  AAGTCATGGCTTTGTTCTGGACATCCTAAAACCAACCAAGTACTCACATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATGGCTTTGTTCTGGACATCCTAAAACCAACCAAGTACTCACATC  688

seq1  AAAGGCAAGAAAGGCAAGACTAGCATGTCTTCAAGGGGGAAAAAAAGTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCAAGAAAGGCAAGACTAGCATGTCTTCAAGGGGGAAAAAAAGTCC  738

seq1  GAATGGCTTTTTCTAACACGTTTTCCCCCATGATTCCTGACAGCTAGTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGCTTTTTCTAACACGTTTTCCCCCATGATTCCTGACAGCTAGTTC  788

seq1  TATATTCCCTACACCAAAATCCAGTCACAATATATTTAAAATACCTATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCCCTACACCAAAATCCAGTCACAATATATTTAAAATACCTATTT  838

seq1  AAAATGTAAATTTGTGCCATCAGATTATTACCCACTTCCCAATCCCCTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTAAATTTGTGCCATCAGATTATTACCCACTTCCCAATCCCCTAA  888

seq1  CTTGTCCTTTAGCAAAAAATAACCTCTTTTCAATTTCCTGGTTTTCCAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCCTTTAGCAAAAAATAACCTCTTTTCAATTTCCTGGTTTTCCAAT  938

seq1  ATCTAAAGTATTACATTTTTGCACCATGTATATTGTCAATAGACCTAAGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAAGTATTACATTTTTGCACCATGTATATTGTCAATAGACCTAAGT  988

seq1  GGTTTCAGTTAAATTTGGGAGGCAGGGAAGGAGAGATGGCTAAGCAGTTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCAGTTAAATTTGGGAGGCAGGGAAGGAGAGATGGCTAAGCAGTTA  1038

seq1  AAGGCATTTTGCTGTTCTTCCAGATGACTAGAATTC  1086
      ||||||||||||||||||||||||||||||||||||
seq2  AAGGCATTTTGCTGTTCTTCCAGATGACTAGAATTC  1074