BAC Information

Click to search

BAC

Clone NameB6Ng01-078F07
Chromosome3 (Build37)
Map Location 135,808,721 - 135,936,115
singlet/doubletdoublet
Overlap geneBank1
Upstream geneEG620439, Cenpe, Bdh2, C80638, 4933425K02Rik, Zcd2, Ube2d3, Manba, LOC668745, Nfkb1, ENSMUSG00000045520, Slc39a8, LOC100039350, LOC383923, LOC100039477
Downstream geneLOC668868, Ppp3ca, LOC668870
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078F07.bB6Ng01-078F07.g
ACCDH894056DH894057
length9711,069
definitionDH894056|Mus musculus domesticus DNA, BAC clone: B6Ng01-078F07, 5' end.DH894057|Mus musculus domesticus DNA, BAC clone: B6Ng01-078F07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,808,721 - 135,809,695)(135,935,037 - 135,936,115)
sequence
gaattctttgtattggttgggaagtacttttaaatcacacttgattatat
tcattgaataatgttaactgaatgaaatataatatgactgactgatcctg
ttatttagacatgacattaaaatattattaatattaagggtaaaaatatt
ttgaatgtataataagaactatagtttttgaatatagctgttaatgaaaa
agtactccgaaggatcattgatcattctcaatttatgataaggagattac
tatatttaaattaatcatatttacttactgcaaacaaaaagtctgttgat
ttggctgaagtactccttaggtgtgctgaacatcagtgagtggaaaggca
ggtttcttactagacgtcagaatagatttccgggtaactaacagctatga
acattgtattgctacaaggagactgaccatgataaaagtcacagaatgga
tgacagtttacacatcccattaaagtgctgtcatcaaaaagctaaaatgg
gattcacgatgctgtgacatcactttccctctgattcacaatagtgtgac
gtctctttccctctatgtttcaaagtcattttcagaaacaagaaaatgaa
accataaatcttgttgaagcagaagagaaagaaacccaggagtataaaag
gctacccaaaggtactgggttatcttaccagtcctcattggtgagtctag
ggcagtgagctgctcccatttcctcacagtgagaggaccatgcagaaggc
gaaagccttgcttgggattggaggtactgggagaaaacagatgggaaaca
atatgcaatcccagtcctcactgtgcctcgaagcttagtcggccatcact
gggaagagaggccccttggtcttgcaaactttatatgctgcaatacaggg
gaaggccaggaccaagaagtgggagcgggtggtagggagcagtcggggtg
tgtgtgtggtattagggactt
gaattcatctgggcaattcttataaaaaaaatttctataagacgacttgg
attttgagtttgcggctgcccatttttaccatttgtagttttgtgatgtg
acctgatcatgtggagttctgtcctttttattccccttagtgtctgtctg
atgtttgattttagaaatacctcaggcttttcccatgcatatgaccttgt
cttgctttctttgggggcagggggaggggaggttcttttatgctcttgtt
gaaaatctattctatgccattcaactgaattctccttcattctatgctta
aagtgtgaatgtgtgtctcttttttgggaggggtgctggagttactcagt
ggagtgtgaggacagtgtgggattggctctgaaaagaatcaccagaagct
tgtgagtgtctggctagtactcttgtttatcagctcgaaagctggggtcc
taagaagcttgtgagtgtctggctagtactcttgtttatcacctcgaaag
ctggggtcctaagaagcttgtgagtgtctggctagtactcttgtttatca
cctcgaaagctggggtcctaagaagcttgtgagtgtctggctagtactct
tgtttatcacctcgaaagctggggtccttcttttcagtaatgatctgttt
ctctgagaagagctcactctacctatgactcgtctttctcttttgtttca
ttcattcacctttggcttctggatagtttaatctcaatcctgccaaatgt
ctcagtcattggtctgattcagttgtcttcatgggaaattatagaggggg
atcctaatattttcatgaagaaattgatcaggcagttttattttcctatt
gccaagcctatatagttcagcttctgatttcaaaaatgcagcttacgtga
taagtagcagtgtagatagcaatggatttactggggatatgaaaaaaatg
atgatgcaagcataatacaaacatccctgtagaagcggttttcttctttg
gtctgtgtattacatcaagaacctgggtgtcctagactcttagaatgggt
tgaaaggcctccggatttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_135808721_135809695
seq2: B6Ng01-078F07.b_42_1012

seq1  GAATTCTTTGTATTGGTTGGGAAGTACTTTTAAATCACACTTGATTATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTATTGGTTGGGAAGTACTTTTAAATCACACTTGATTATAT  50

seq1  TCATTGAATAATGTTAACTGAATGAAATATAATATGACTGACTGATCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGAATAATGTTAACTGAATGAAATATAATATGACTGACTGATCCTG  100

seq1  TTATTTAGACATGACATTAAAATATTATTAATATTAAGGGTAAAAATATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAGACATGACATTAAAATATTATTAATATTAAGGGTAAAAATATT  150

seq1  TTGAATGTATAATAAGAACTATAGTTTTTGAATATAGCTGTTAATGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGTATAATAAGAACTATAGTTTTTGAATATAGCTGTTAATGAAAA  200

seq1  AGTACTCCGAAGGATCATTGATCATTCTCAATTTATGATAAGGAGATTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTCCGAAGGATCATTGATCATTCTCAATTTATGATAAGGAGATTAC  250

seq1  TATATTTAAATTAATCATATTTACTTACTGCAAACAAAAAGTCTGTTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTAAATTAATCATATTTACTTACTGCAAACAAAAAGTCTGTTGAT  300

seq1  TTGGCTGAAGTACTCCTTAGGTGTGCTGAACATCAGTGAGTGGAAAGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTGAAGTACTCCTTAGGTGTGCTGAACATCAGTGAGTGGAAAGGCA  350

seq1  GGTTTCTTACTAGACGTCAGAATAGATTTCCGGGTAACTAACAGCTATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTTACTAGACGTCAGAATAGATTTCCGGGTAACTAACAGCTATGA  400

seq1  ACATTGTATTGCTACAAGGAGACTGACCATGATAAAAGTCACAGAATGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTATTGCTACAAGGAGACTGACCATGATAAAAGTCACAGAATGGA  450

seq1  TGACAGTTTACACATCCCATTAAAGTGCTGTCATCAAAAAGCTAAAATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTTTACACATCCCATTAAAGTGCTGTCATCAAAAAGCTAAAATGG  500

seq1  GATTCACGATGCTGTGACATCACTTTCCCTCTGATTCACAATAGTGTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCACGATGCTGTGACATCACTTTCCCTCTGATTCACAATAGTGTGAC  550

seq1  GTCTCTTTCCCTCTATGTTTCAAAGTCATTTTCAGAAACAAGAAAATGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTTCCCTCTATGTTTCAAAGTCATTTTCAGAAACAAGAAAATGAA  600

seq1  ACCATAAATCTTGTTGAAGCAGAAGAGAAAGAAACCCAGGAGTATAAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAAATCTTGTTGAAGCAGAAGAGAAAGAAACCCAGGAGTATAAAAG  650

seq1  GCTACCCAAAGGTACTGGGTTATCTTACCAGTCCTCATTGGTGAGTCTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCCAAAGGTACTGGGTTATCTTACCAGTCCTCATTGGTGAGTCTAG  700

seq1  GGCAGTGAGCTGCTCCCATTTCCTCACAGTGAGAGGACCATGCAGAAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTGAGCTGCTCCCATTTCCTCACAGTGAGAGGACCATGCAGAAGGC  750

seq1  GAAAGCCTTGCTTGGGATTGGAGGTACTGGGAGAAAACAGATGGGAAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCCTTGCTTGGGATTGGAGGTACTGGGAGAAAACAGATGGGAAACA  800

seq1  ATATGCAATCCCAGTCCTCACTGTGCCTCGAAGCTTAGTCGGCCATCACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCAATCCCAGTCCTCACTGTGCCTCGAAGCTTAGTCGGCCATCACT  850

seq1  GGGAAGAGAGGCCCCTTGGTCTTGCAAACTTTATATGCTGCAATACAGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAGAGGCCCCTTGGTCTTGCAAACTTTATATGCTGCAATACAGGG  900

seq1  GAAGGCCAGGACCAAGAAGTGGGAGCGGGTGGGTAGGGGAGCAGGTCGGG  950
      |||||||||||||||||||||||||||||| |||| ||||||| ||||||
seq2  GAAGGCCAGGACCAAGAAGTGGGAGCGGGT-GGTA-GGGAGCA-GTCGGG  947

seq1  GTGTGTGTGTGGTAATAGGGGACTT  975
      |||||||||||||| || |||||||
seq2  GTGTGTGTGTGGTATTA-GGGACTT  971

seq1: chr3_135935037_135936115
seq2: B6Ng01-078F07.g_68_1136 (reverse)

seq1  CAAATCAGGAGGCCTTTCTACCCACTTCTCAGGAGTCTCAGACACCCAGG  50
      |||||| ||||||||||| ||||| |||| | ||||||  ||||||||||
seq2  CAAATCCGGAGGCCTTTCAACCCA-TTCT-AAGAGTCTAGGACACCCAGG  48

seq1  TCTCTGATTGTAATACACAGACCAAGAGAAGGAAAACCGCTTCTACAGGG  100
      | |||   ||||||||||||||||| |||| |||||||||||||||||||
seq2  T-TCTTGATGTAATACACAGACCAA-AGAA-GAAAACCGCTTCTACAGGG  95

seq1  ATTGTTTCTGTATTATTGCTTGCATCATCATTTTTTTCATATCCCCAGTA  150
      | ||||  ||||||| ||||||||||||||||||||||||||||||||||
seq2  A-TGTT--TGTATTA-TGCTTGCATCATCATTTTTTTCATATCCCCAGTA  141

seq1  AATCCATTGCTATACTACACTGCTACTTATCACGTTAAGCTGCATTTTTG  200
      ||||||||||||| |||||||||||||||||||| |||||||||||||||
seq2  AATCCATTGCTAT-CTACACTGCTACTTATCACG-TAAGCTGCATTTTTG  189

seq1  AAATCAGAAGCTGAACTATATAGGCTTGGCAATAGGAAAATAAAACTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGAAGCTGAACTATATAGGCTTGGCAATAGGAAAATAAAACTGCC  239

seq1  TTGATCAATTTCTTCATGAAAATATTAGGATCCCCCTCTATAATTTCCCA  300
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TGATCAATTTCTTCATGAAAATATTAGGATCCCCCTCTATAATTTCCCA  288

seq1  TGAAGACAACTGAATCAGACCAATGACTGAGACATTTGGCAGGATTGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACAACTGAATCAGACCAATGACTGAGACATTTGGCAGGATTGAGA  338

seq1  TTAAACTATCCAGAAGCCAAAGGTGAATGAATGAA--CAAAGAGAAAGAC  398
      |||||||||||||||||||||||||||||||||||   ||||||||||||
seq2  TTAAACTATCCAGAAGCCAAAGGTGAATGAATGAAACAAAAGAGAAAGAC  388

seq1  GAGTCATAGGTAGAGTGAGCTCTTCTCAGAGAAACAGATCATTACTGAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCATAGGTAGAGTGAGCTCTTCTCAGAGAAACAGATCATTACTGAAA  438

seq1  AGAAGGACCCCAGCTTTCGAGGTGATAAACAAGAGTACTAGCCAGACACT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGACCCCAGCTTTCGAGGTGATAAACAAGAGTACTAGCCAGACACT  488

seq1  CACAAGCTTCTTAGGACCCCAGCTTTCGAGGTGATAAACAAGAGTACTAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGCTTCTTAGGACCCCAGCTTTCGAGGTGATAAACAAGAGTACTAG  538

seq1  CCAGACACTCACAAGCTTCTTAGGACCCCAGCTTTCGAGGTGATAAACAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACACTCACAAGCTTCTTAGGACCCCAGCTTTCGAGGTGATAAACAA  588

seq1  GAGTACTAGCCAGACACTCACAAGCTTCTTAGGACCCCAGCTTTCGAGCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACTAGCCAGACACTCACAAGCTTCTTAGGACCCCAGCTTTCGAGCT  638

seq1  GATAAACAAGAGTACTAGCCAGACACTCACAAGCTTCTGGTGATTCTTTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAACAAGAGTACTAGCCAGACACTCACAAGCTTCTGGTGATTCTTTT  688

seq1  CAGAGCCAATCCCACACTGTCCTCACACTCCACTGAGTAACTCCAGCACC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCAATCCCACACTGTCCTCACACTCCACTGAGTAACTCCAGCACC  738

seq1  CCTCCCAAAAAAGAGACACACATTCACACTTTAAGCATAGAATGAAGGAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCAAAAAAGAGACACACATTCACACTTTAAGCATAGAATGAAGGAG  788

seq1  AATTCAGTTGAATGGCATAGAATAGATTTTCAACAAGAGCATAAAAGAAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGTTGAATGGCATAGAATAGATTTTCAACAAGAGCATAAAAGAAC  838

seq1  CTCCCCTCCCCCTGCCCCCAAAGAAAGCAAGACAAGGTCATATGCATGGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTCCCCCTGCCCCCAAAGAAAGCAAGACAAGGTCATATGCATGGG  888

seq1  AAAAGCCTGAGGTATTTCTAAAATCAAACATCAGACAGACACTAAGGGGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCTGAGGTATTTCTAAAATCAAACATCAGACAGACACTAAGGGGA  938

seq1  ATAAAAAGGACAGAACTCCACATGATCAGGTCACATCACAAAACTACAAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAGGACAGAACTCCACATGATCAGGTCACATCACAAAACTACAAA  988

seq1  TGGTAAAAATGGGCAGCCGCAAACTCAAAATCCAAGTCGTCTTATAGAAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAAAATGGGCAGCCGCAAACTCAAAATCCAAGTCGTCTTATAGAAA  1038

seq1  TTTTTTTTATAAGAATTGCCCAGATGAATTC  1079
      |||||||||||||||||||||||||||||||
seq2  TTTTTTTTATAAGAATTGCCCAGATGAATTC  1069