BAC Information

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BAC

Clone NameB6Ng01-078F14
Chromosome3 (Build37)X (Build37)
Map Location 41,059,221 - 41,059,73747,743,054 - 47,744,163
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078F14.bB6Ng01-078F14.g
ACCDH894070DH894071
length1,0241,104
definitionDH894070|Mus musculus domesticus DNA, BAC clone: B6Ng01-078F14, 5' end.DH894071|Mus musculus domesticus DNA, BAC clone: B6Ng01-078F14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,221 - 41,059,737)(47,743,054 - 47,744,163)
sequence
gaattctttgtttagctctgagccccattttttaatggagttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
gtatctgatttaggattggtaaaaatcctttcccaatctgttggtggcct
ttttgtcttattgacagtgtcttttgccttacagaagcttttcaatttta
taggtcccatttgtctacacttgatcttacagcacaagccatttctgttc
tgtttagcattttttcccctgtgcccatatctttgaggctttcccacact
ttctcttctataaatttcagtgtctccggttttatgtggagttctttgat
tcacttagacttgagctttgtacaaggagataagaatggatcaattcgaa
ttcttctacatgataacctccagttgtgccagcatcatttgttgaaaatg
ctgtcttttttccactggatggttttagctctcttgtcaaagatcaagtg
accataggtgtgtggattcatttctgggtcttcaattctattccattgaa
ctacctgtctgtcactgtatctgtaccatgcaggtttttttgttttgttt
tgttttgttttgtttttttttatcaaaattgctctgtagtacagcttgag
atcaggtattgtgattccaacagaggttctttcattgttgagaatagttt
ttactatcctagatttttttattattccagatgaatttgcaaattgccat
ttctaactcagtgaagaattgtgttggaattttgatggggattgcattga
atctgtagattgcttttggcaggacagacattttgacaatattaatcctg
ccaatccatgagcatgggagattgttctatcttctgagttcttcaatttc
tttcttcagagacttgaagttcttgtcatacaaatctttcacttccttag
ttagagtcacactaaagtattttatattatttgtgactatgttaagggtc
ttgtttccttaatttctttcccac
gaattctgttcttgtgggtgtcttattttaggggaccactaacatttccc
tggcactacagttcctggtggtcttttggggatcttgcgatctgggcata
acaatggaaaagggggcctcaggatccattgtgtgaaaggacaggagagc
tagatagctatgaaattgaatggaaattctctttcttgagtctgtgtggt
ttaggattctgagtcgctctttgcgcaccttagaatacggtacttttacg
tcaagtcgacttgccttacggccaactatttgtgctctacggctccctat
ttatggggatattttcacaggaccgaagccgattctcggactcgacagtt
tgctgccatggccttcctagctttgaggagtttgtatatcctttatggtc
attctcacatctgaatgcccactatcttgcttttaaattttcatttagcc
accttttggttctaaactattgattttctgcatctgtcttggtccggtgc
tggcagagcctctccgaagatagccataataggttcctttccgcacatgt
tggactcaggaataatgtcggggtttggtgtctgcctatgggatgggttc
caaagtggggcagtgccagggacagcccaggcatgggatctttcttgttg
gttcttatttaggcagcggagggggaagagtgtccgtggagggtaagact
tttgtcttatgagatacggggtaagaactttttttttacgagatatttag
gatttctgaataatgataataataagtttacttgtgtaagtaaagtaata
tgctactatagctgacctgccttctgtgatcctgaggcaagaaactgcag
ttactggcacttagcacctcttcctcaattgagcagcaaagggtttaagt
agtcttttgtactatctcagcagaactgcactgctctttcagcccactag
ttggaagtctcagaaaaagagcggacacatagaaaagtgattatccgttt
tcattttctacatacagacagccagttagacagcacactattgaagaatg
ctttcttttttcctctggatatttggccactttgtcaaaggatagggtcc
gcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059221_41059737
seq2: B6Ng01-078F14.b_50_566 (reverse)

seq1  AATCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCAT  50
      ||||||||||||||||||||||||||||| |||||| |||||||||||||
seq2  AATCCACACACCTATGGTCACTTGATCTTTGACAAGAGAGCTAAAACCAT  50

seq1  CCAGTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGT  100
      ||||||||||||||||||||||||||||||||| ||||||||||||||| 
seq2  CCAGTGGAAAAAAGACAGCATTTTCAACAAATGATGCTGGCACAACTGGA  100

seq1  TGTTATCATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACT  150
       |||||||||||||||||| |||||||||||| || ||||||||||||| 
seq2  GGTTATCATGTAGAAGAATTCGAATTGATCCATTCTTATCTCCTTGTACA  150

seq1  AAGGTCAAATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACACT  200
      ||| |||| |||||||| ||||| |||| |||||||||||| ||||||||
seq2  AAGCTCAAGTCTAAGTGAATCAAAGAACTCCACATAAAACCGGAGACACT  200

seq1  GAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAG  250
      |||| ||||||| ||||||||| || |||||||  ||||||||| |||||
seq2  GAAATTTATAGAAGAGAAAGTGTGGGAAAGCCTCAAAGATATGGGCACAG  250

seq1  GGGAAAAATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGA  300
      |||||||| | ||  | ||||||| ||||||||||||||||||||  || 
seq2  GGGAAAAAATGCTAAACAGAACAGAAATGGCTTGTGCTGTAAGATCAAGT  300

seq1  ATAGACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGA  350
       |||||||||||||||| || ||| || |||||||||| |||||||||||
seq2  GTAGACAAATGGGACCT-ATAAAATTGAAAAGCTTCTGTAAGGCAAAAGA  349

seq1  CACCGTCAATAAGACAAAAAGG-CACCAACAGATTGGGAAAGGATCTTTA  399
      ||| |||||||||||||||||| |||||||||||||||||||||| ||||
seq2  CACTGTCAATAAGACAAAAAGGCCACCAACAGATTGGGAAAGGATTTTTA  399

seq1  CCTATCCTAAATCAGATAGGGGACTAATATCCAATATATATCAAGAACTC  449
      || ||||||||||||||| |||||||||||||||||||||| ||||||||
seq2  CCAATCCTAAATCAGATACGGGACTAATATCCAATATATATAAAGAACTC  449

seq1  AAGAAGGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTC  499
      ||||||||||| |||||||||||||||||| |||||||||||||||||||
seq2  AAGAAGGTGGACTCCAGAAAATCAAATAACTCCATTAAAAAATGGGGCTC  499

seq1  AGAGCTAAACAAAGAATT  517
      ||||||||||||||||||
seq2  AGAGCTAAACAAAGAATT  517

seq1: chrX_47743054_47744163
seq2: B6Ng01-078F14.g_70_1173

seq1  GAATTCTGTTCTTGTGGGTGTCTTATTTTAGGGGACCACTAACATTTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTCTTGTGGGTGTCTTATTTTAGGGGACCACTAACATTTCCC  50

seq1  TGGCACTACAGTTCCTGGTGGTCTTTTGGGGATCTTGCGATCTGGGCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACTACAGTTCCTGGTGGTCTTTTGGGGATCTTGCGATCTGGGCATA  100

seq1  ACAATGGAAAAGGGGGCCTCAGGATCCATTGTGTGAAAGGACAGGAGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGGAAAAGGGGGCCTCAGGATCCATTGTGTGAAAGGACAGGAGAGC  150

seq1  TAGATAGCTATGAAATTGAATGGAAATTCTCTTTCTTGAGTCTGTGTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGCTATGAAATTGAATGGAAATTCTCTTTCTTGAGTCTGTGTGGT  200

seq1  TTAGGATTCTGAGTCGCTCTTTGCGCACCTTAGAATACGGTACTTTTACG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGATTCTGAGTCGCTCTTTGCGCACCTTAGAATACGGTACTTTTACG  250

seq1  TCAAGTCGACTTGCCTTACGGCCAACTATTTGTGCTCTACGGCTCCCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTCGACTTGCCTTACGGCCAACTATTTGTGCTCTACGGCTCCCTAT  300

seq1  TTATGGGGATATTTTCACAGGACCGAAGCCGATTCTCGGACTCGACAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGGGATATTTTCACAGGACCGAAGCCGATTCTCGGACTCGACAGTT  350

seq1  TGCTGCCATGGCCTTCCTAGCTTTGAGGAGTTTGTATATCCTTTATGGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCCATGGCCTTCCTAGCTTTGAGGAGTTTGTATATCCTTTATGGTC  400

seq1  ATTCTCACATCTGAATGCCCACTATCTTGCTTTTAAATTTTCATTTAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCACATCTGAATGCCCACTATCTTGCTTTTAAATTTTCATTTAGCC  450

seq1  ACCTTTTGGTTCTAAACTATTGATTTTCTGCATCTGTCTTGGTCCGGTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTGGTTCTAAACTATTGATTTTCTGCATCTGTCTTGGTCCGGTGC  500

seq1  TGGCAGAGCCTCTCCGAAGATAGCCATAATAGGTTCCTTTCCGCACATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGAGCCTCTCCGAAGATAGCCATAATAGGTTCCTTTCCGCACATGT  550

seq1  TGGACTCAGGAATAATGTCGGGGTTTGGTGTCTGCCTATGGGATGGGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTCAGGAATAATGTCGGGGTTTGGTGTCTGCCTATGGGATGGGTTC  600

seq1  CAAAGTGGGGCAGTGCCAGGGACAGCCCAGGCATGGGATCTTTCTTGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGGGGCAGTGCCAGGGACAGCCCAGGCATGGGATCTTTCTTGTTG  650

seq1  GTTCTTATTTAGGCAGCGGAGGGGGAAGAGTGTCCGTGGAGGGTAAGAC-  699
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTTCTTATTTAGGCAGCGGAGGGGGAAGAGTGTCCGTGGAGGGTAAGACT  700

seq1  TTTGTCTTATGAGATACGGGGTAAGAAC-TTTTTCTTACGAGATATTTAG  748
      |||||||||||||||||||||||||||| ||||| |||||||||||||||
seq2  TTTGTCTTATGAGATACGGGGTAAGAACTTTTTTTTTACGAGATATTTAG  750

seq1  GATTTCTGAATAATGATAATAATAAGTTTACTTGTGTAAGTAAAGTAATA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTGAATAATGATAATAATAAGTTTACTTGTGTAAGTAAAGTAATA  800

seq1  TGCTACTATAGCTGACCTGCCTTCTGTGATCCTGAGGCAAGAAACTGCAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACTATAGCTGACCTGCCTTCTGTGATCCTGAGGCAAGAAACTGCAG  850

seq1  TTACTGGCACTTAGCACCTCTTCCTCAATTGAGCAGCAAAGGG-TTAAGT  897
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTACTGGCACTTAGCACCTCTTCCTCAATTGAGCAGCAAAGGGTTTAAGT  900

seq1  AGTC-TTTGTACTATCTCAGCAGGAACTGCACTGCTCTTTCAGCCCACTA  946
      |||| ||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGTCTTTTGTACTATCTCAGCA-GAACTGCACTGCTCTTTCAGCCCACTA  949

seq1  GTTGGAAGTCTCAGGAAAAAAGAGCGGACACATAGAAAAGTGATTATTCC  996
      ||||||||||||||  |||||||||||||||||||||||||||||| |||
seq2  GTTGGAAGTCTCAG--AAAAAGAGCGGACACATAGAAAAGTGATTA-TCC  996

seq1  GTTTTCATTTTTCTACATACAGACAGCCAGTTAGACCAGCACCACTTATT  1046
      ||||||| ||||||||||||||||||||||||||| ||||| ||| ||||
seq2  GTTTTCA-TTTTCTACATACAGACAGCCAGTTAGA-CAGCA-CAC-TATT  1042

seq1  GAAG-ATGCTTTCTTTTTTCTACTGGATATTTTTGGCGACTTTGTCAAAG  1095
      |||| |||||||||||||||  |||||||  |||||| ||||||||||||
seq2  GAAGAATGCTTTCTTTTTTCCTCTGGATA--TTTGGCCACTTTGTCAAAG  1090

seq1  ATAAGGTGTCCGCAA  1110
         ||| ||||||||
seq2  GATAGG-GTCCGCAA  1104