BAC Information

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BAC

Clone NameB6Ng01-078M20
Chromosome3 (Build37)
Map Location 82,759,935 - 82,881,798
singlet/doubletdoublet
Overlap geneFgg, Fga, Fgb, Plrg1
Upstream geneCtso, Tdo2, Accn5, Gucy1b3, Gucy1a3, Mtap9, Npy2r, LOC100041940, EG633285, Lrat
Downstream geneEG627094, Dchs2, 1700028M03Rik, LOC100042007, LOC100042091, Sfrp2, LOC633522, Tlr2, D930015E06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078M20.bB6Ng01-078M20.g
ACCDH894401DH894402
length1,0331,098
definitionDH894401|Mus musculus domesticus DNA, BAC clone: B6Ng01-078M20, 5' end.DH894402|Mus musculus domesticus DNA, BAC clone: B6Ng01-078M20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,880,757 - 82,881,798)(82,759,935 - 82,761,056)
sequence
gaattctcactccctgtcgtagagtcctaacatcagtcatggaggggggc
acacaagaccttcccccagtcttacttagataccttggggcccaatttca
tgtaggtcatgtggagataccacagccaaaaggccctaatttaacaaaca
aactaaaagtatttttgaggaaaaaaagaaaaaggtctattttattttaa
acaaccttacagagcaggtatggtcagtgtgatatttgccaaccaaaagt
attaccaaacattggataatctaaaaataaattataaaattttaagaaaa
tcctcaaataagctttcctgttttctgagctgagctggtttttgtttgtt
tgtttgtttgtttgtaatgtcatcacattgctggatatttgcccaattga
ttttcctatcatcagacatcaaggatgtcccatccagccccttgggtgaa
atgggatttttacctctcaattcatttacagaacagaacctgtttcagag
aaattacagaatgaaaggagtgtaaattcaagaagattctggtgcggttt
ggttgcacaggacatggtaaatggtgtggctgtgcatgttgactctacaa
ttgtgcatcagctattgtcttttggaaacaatacaggatcaaggcaattg
atgtttgtaaaaaacacaggaacaaaagaaacagtattttcttcagtgga
aacaatgaagaaatgtccaggaagacagaaggaggggtggtccttaagta
caccagctaagaaaacaaggcatttgaattccccataggcattcccagaa
attatgacaaacccacgtggcacagcaaaggtggaaaaggacacacacac
acacagacacacagacacacacaccagagagagagagagggggggggggg
aggcacgaaccacagatcttattctaaaattactttttacctattttgtg
tagacaatgctctatctattgacacagaacgccttgaggattgtgtatga
ggtcgtgatgaaagaaaattccctctccccctc
gaattccactggacagaacccaaactcaagagctttaacagaggcattcc
gaaccctgaacactgtaacattcaatagggaacaacattctggcaggcta
caggcatggtccctatgaatctctcattcctggcatccttggggtgcctc
agcagtcactgtttcatcctcaatttctccaatccgccacagagagtatg
tcctgatgttatctcaatcaatttttccatttctcacttcacatacaaag
cctcccttcagctttgaagataacatattcatcagatgggaagcccttca
tacctaccaccagctgaggtttcccatctgtgctgtactgtgtagatgct
gctcagggacccacctgccatttgcagcacttcgcttcatttccacatca
tgagcatggcaacgctttctctggcctgactcccttgcagctacaggtga
ccatgtgagagggcaaacactcgtgcccacagattgcttgtcctgtggga
aaatgagtctttgctaaggaacttgttttctgttctttgtactgggaagc
acttctaactagtacactgtggaagccatgcttccccctcttttacaatg
aaagtctgcttccagactgcgaaccccataatctcccactcactcagagg
cctccccctaggctcccatttgtatcttcaagctcttgctcacttctggt
aacttcacagcatcactgtttaaatccagtcatctcccgcccacattaag
taaaagctgaacttgtctcagacctcccatcatcctccggccacttgcta
tccttactctttgtttcacagacattcttaatgaaagctcttcacatccc
ctgtccctaattccttattccaagtcatttctcaagcaacagtgtgtctg
gattctaaaggctatgcgaagccaccagcaacattcttgtacaaatccaa
agggaagtctcagtttcatctcatctggtcttgcatagcattgacatatg
atattaatccatttgatatatttctgggatcttttcaaaataatattcct
tcaatacattaatagtggatttcgattcatattagcttgcattgacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_82880757_82881798
seq2: B6Ng01-078M20.b_47_1079 (reverse)

seq1  GAGGGGGAGGGGAATTTTTCTCTCCTTCACAGCCTCTGTCACAATCCTCA  50
      ||||||||| || | |||||| | | ||||  ||||   |||||||||||
seq2  GAGGGGGAGAGGGAATTTTCT-TTCATCACGACCTCATACACAATCCTCA  49

seq1  AAGCGTTCTGTTTGTCAAATATATTAATGCCATGCTCTTACACTATATAG  100
      | ||||||||  |||| |||| ||  |   |||  || ||||| | ||||
seq2  AGGCGTTCTG--TGTC-AATAGAT--AGAGCATTGTC-TACACAAAATAG  93

seq1  GTAAAATGTTATATTTTGTGAATAAGATCTTGTGGTTCTGTGCCT-CCCC  149
      |||||| |   || |||  |||||||||| |||||||| |||||| ||||
seq2  GTAAAAAG---TAATTTTAGAATAAGATC-TGTGGTTC-GTGCCTCCCCC  138

seq1  CCCCCCCTCTCTCTCTCTCTGTGTGTGTGTGTCTGTGTGTCTGTGTGTGT  199
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CCCCCCCTCTCTCTCTCTCTG-GTGTGTGTGTCTGTGTGTCTGTGTGTGT  187

seq1  GTGTGTCCTTTTCCACCTTTGCTGTGCCACGTGGGTTTGTCATAATTTCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCCTTTTCCACCTTTGCTGTGCCACGTGGGTTTGTCATAATTTCT  237

seq1  GGGAATGCCTATGGGGAATTC-AATGCCTTGTTTTCTTAGCTGGTGTACT  298
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGGAATGCCTATGGGGAATTCAAATGCCTTGTTTTCTTAGCTGGTGTACT  287

seq1  T-AGGACCACCCCTCCTTCTGTCTTCCTGGACATTTCTTCATTGTTTCCA  347
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGACCACCCCTCCTTCTGTCTTCCTGGACATTTCTTCATTGTTTCCA  337

seq1  CTGAAG-AAATACTGTTTCTTTTGTTCCTGTGTTTTTTACAAACATCAAT  396
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGAAAATACTGTTTCTTTTGTTCCTGTGTTTTTTACAAACATCAAT  387

seq1  TGCCTTGATCCTGTATTGTTTCCAAAAGACAATAGCTGATGCACAATTGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGATCCTGTATTGTTTCCAAAAGACAATAGCTGATGCACAATTGT  437

seq1  AGAGTCAACATGCACAGCCACACCATTTACCATGTCCTGTGCAACCAAAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCAACATGCACAGCCACACCATTTACCATGTCCTGTGCAACCAAAC  487

seq1  CGCACCAGAATCTTCTTGAATTTACACTCCTTTCATTCTGTAATTTCTCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACCAGAATCTTCTTGAATTTACACTCCTTTCATTCTGTAATTTCTCT  537

seq1  GAAACAGGTTCTGTTCTGTAAATGAATTGAGAGGTAAAAATCCCATTTCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGGTTCTGTTCTGTAAATGAATTGAGAGGTAAAAATCCCATTTCA  587

seq1  CCCAAGGGGCTGGATGGGACATCCTTGATGTCTGATGATAGGAAAATCAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGGGGCTGGATGGGACATCCTTGATGTCTGATGATAGGAAAATCAA  637

seq1  TTGGGCAAATATCCAGCAATGTGATGACATTACAAACAAACAAACAAACA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCAAATATCCAGCAATGTGATGACATTACAAACAAACAAACAAACA  687

seq1  AACAAAAACCAGCTCAGCTCAGAAAACAGGAAAGCTTATTTGAGGATTTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAACCAGCTCAGCTCAGAAAACAGGAAAGCTTATTTGAGGATTTT  737

seq1  CTTAAAATTTTATAATTTATTTTTAGATTATCCAATGTTTGGTAATACTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAATTTTATAATTTATTTTTAGATTATCCAATGTTTGGTAATACTT  787

seq1  TTGGTTGGCAAATATCACACTGACCATACCTGCTCTGTAAGGTTGTTTAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTGGCAAATATCACACTGACCATACCTGCTCTGTAAGGTTGTTTAA  837

seq1  AATAAAATAGACCTTTTTCTTTTTTTCCTCAAAAATACTTTTAGTTTGTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATAGACCTTTTTCTTTTTTTCCTCAAAAATACTTTTAGTTTGTT  887

seq1  TGTTAAATTAGGGCCTTTTGGCTGTGGTATCTCCACATGACCTACATGAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAATTAGGGCCTTTTGGCTGTGGTATCTCCACATGACCTACATGAA  937

seq1  ATTGGGCCCCAAGGTATCTAAGTAAGACTGGGGGAAGGTCTTGTGTGCCC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGCCCCAAGGTATCTAAGTAAGACTGGGGGAAGGTCTTGTGTGCCC  987

seq1  CCCTCCATGACTGATGTTAGGACTCTACGACAGGGAGTGAGAATTC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCATGACTGATGTTAGGACTCTACGACAGGGAGTGAGAATTC  1033

seq1: chr3_82759935_82761056
seq2: B6Ng01-078M20.g_70_1167

seq1  GAATTCCACTGGACAGAACCCAAACTCAAGAGCTTTAACAGAGGCATTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTGGACAGAACCCAAACTCAAGAGCTTTAACAGAGGCATTCC  50

seq1  GAACCCTGAACACTGTAACATTCAATAGGGAACAACATTCTGGCAGGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCTGAACACTGTAACATTCAATAGGGAACAACATTCTGGCAGGCTA  100

seq1  CAGGCATGGTCCCTATGAATCTCTCATTCCTGGCATCCTTGGGGTGCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATGGTCCCTATGAATCTCTCATTCCTGGCATCCTTGGGGTGCCTC  150

seq1  AGCAGTCACTGTTTCATCCTCAATTTCTCCAATCCGCCACAGAGAGTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCACTGTTTCATCCTCAATTTCTCCAATCCGCCACAGAGAGTATG  200

seq1  TCCTGATGTTATCTCAATCAATTTTTCCATTTCTCACTTCACATACAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGATGTTATCTCAATCAATTTTTCCATTTCTCACTTCACATACAAAG  250

seq1  CCTCCCTTCAGCTTTGAAGATAACATATTCATCAGATGGGAAGCCCTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTTCAGCTTTGAAGATAACATATTCATCAGATGGGAAGCCCTTCA  300

seq1  TACCTACCACCAGCTGAGGTTTCCCATCTGTGCTGTACTGTGTAGATGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTACCACCAGCTGAGGTTTCCCATCTGTGCTGTACTGTGTAGATGCT  350

seq1  GCTCAGGGACCCACCTGCCATTTGCAGCACTTCGCTTCATTTCCACATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGGGACCCACCTGCCATTTGCAGCACTTCGCTTCATTTCCACATCA  400

seq1  TGAGCATGGCAACGCTTTCTCTGGCCTGACTCCCTTGCAGCTACAGGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATGGCAACGCTTTCTCTGGCCTGACTCCCTTGCAGCTACAGGTGA  450

seq1  CCATGTGAGAGGGCAAACACTCGTGCCCACAGATTGCTTGTCCTGTGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGAGAGGGCAAACACTCGTGCCCACAGATTGCTTGTCCTGTGGGA  500

seq1  AAATGAGTCTTTGCTAAGGAACTTGTTTTCTGTTCTTTGTACTGGGAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGTCTTTGCTAAGGAACTTGTTTTCTGTTCTTTGTACTGGGAAGC  550

seq1  ACTTCTAACTAGTACACTGTGGAAGCCATGCTTCCCCCTCTTTTACAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTAACTAGTACACTGTGGAAGCCATGCTTCCCCCTCTTTTACAATG  600

seq1  AAAGTCTGCTTCCAGACTGCGAACCCCATAATCTCCCACTCACTCAGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTGCTTCCAGACTGCGAACCCCATAATCTCCCACTCACTCAGAGG  650

seq1  CCTCCCCCTAGGCTCCCATTTGTATCTTCAAGCTCTTGCTCACTTCTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCCTAGGCTCCCATTTGTATCTTCAAGCTCTTGCTCACTTCTGGT  700

seq1  AACTTCACAGCATCACTGTTTAAATCCAGTCATCTCCCGCCCACATTAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCACAGCATCACTGTTTAAATCCAGTCATCTCCCGCCCACATTAAG  750

seq1  TAAAAGCTGAACTTGTCTCAGACCTCCCATCATCCTCCGGCCACTTGCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGCTGAACTTGTCTCAGACCTCCCATCATCCTCCGGCCACTTGCTA  800

seq1  TCCTTACTCTTTGTTTCACAGACATTCTTAATGAAAGCTCTTCACATCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTACTCTTTGTTTCACAGACATTCTTAATGAAAGCTCTTCACATCCC  850

seq1  CTGTCCCTAATTCCTTATTTCCAAGTCATTTCTCAAGCAACAGTGTGTCT  900
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTGTCCCTAATTCCTTA-TTCCAAGTCATTTCTCAAGCAACAGTGTGTCT  899

seq1  GGATTCT-AAGGCTATGCGAAGGCCACCAGCAACATTCTTGTTACAAAAT  949
      ||||||| ||||||||||||| ||||||||||||||||||| ||| ||||
seq2  GGATTCTAAAGGCTATGCGAA-GCCACCAGCAACATTCTTG-TAC-AAAT  946

seq1  CCAAAGGGAAGTTCTCAGTTTTCATCTCATCTGGTCTTTGCATAGCATTT  999
      ||||||||||| |||||| ||||||||||||||||| |||||||||| ||
seq2  CCAAAGGGAAG-TCTCAG-TTTCATCTCATCTGGTC-TTGCATAGCA-TT  992

seq1  GACATTATGATTATTTAATCCATTTTGATATTATTTCTTGGGGATCTTTT  1049
      |||| ||||||   |||||||| ||||||| |||||||  |||||| |||
seq2  GACA-TATGAT--ATTAATCCA-TTTGATA-TATTTCT--GGGATC-TTT  1034

seq1  TCAAAAT-ATATTTCTCTCAATTACATTTAATAGTGGGATTTCGAATCCC  1098
      ||||||| ||||| || |||| |||| |||||||| ||||||||| ||  
seq2  TCAAAATAATATTCCT-TCAA-TACA-TTAATAGT-GGATTTCGATTC--  1078

seq1  ATTATTTTAGCTTGGTATTGACAA  1122
         || ||||||| | ||||||||
seq2  ---ATATTAGCTT-GCATTGACAA  1098