BAC Information

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BAC

Clone NameB6Ng01-078P20
Chromosome3 (Build37)
Map Location 128,778,620 - 128,921,960
singlet/doubletdoublet
Overlap genePitx2
Upstream geneEG668828, LOC100043393, EG668831
Downstream geneEnpep, LOC100043415, LOC435755, LOC668840, Elovl6, LOC100043758, Egf, Gm421, Rrh, Nola1, Cfi, Pla2g12a, Casp6, Ccdc109b, Sec24b, EG668844, EG668845, Col25a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078P20.bB6Ng01-078P20.g
ACCDH894537DH894538
length1,1941,170
definitionDH894537|Mus musculus domesticus DNA, BAC clone: B6Ng01-078P20, 5' end.DH894538|Mus musculus domesticus DNA, BAC clone: B6Ng01-078P20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,778,620 - 128,779,830)(128,920,776 - 128,921,960)
sequence
gaattcttctatctcctagtatgattctaacacgaagtaaagaaagcaat
gaatccctgctctcaggcatccatgatcccaaagagtccttaaacctttt
actccttcacctcccacttgaccgactgagtggccacacccattgaaatc
tctccaaggtacgatcagcatttgttccctgcttccctctactgggaatg
ctcctccctccccttgctgaacaaccctacagatctttcaaagctaactt
agtgttacctgctctcgttttctcggactaatacctaacccatgaaagga
gaagcatccatctatctactgctccatgtttcctgttcccatagcactta
gctaaaagtgctcatctttttatgtaaggtaaaatgagtcgcttatactg
ttatatgtcataagactgtgagatcctggaaggaggagctgctatatcag
gaagcatttgaaagaggcaggcagcaatttgatatacaaattcagtcagt
cagtctttcgttgagttcattcaattgggcaagggaaatctcctttctcc
aaactttttctagctaaggatttttttctttctgtagattaaatactaaa
taaactttaacaacaaggcttctttaaacaagctggcatcttctcgctgg
ttttgaaaatcagactgggaatcttacagccaaggcagacctcaacagct
ttctttacttagctatcataactgaacacttaactgaacatattcaaata
cttagaagttcttactggcaaacctgcaaatgaatgcttaaaagagtgtg
tgtggcaggagaaatgactataaaactgtcaagtaaggaaagcattgatc
tgcttctctgggtctaattgctgccctgtgtaactcaacggggattctca
gagtggattacacagactgtgaatccagcccagatgtgggctccaggatg
gctcagcttgcttgccaataaactcctttttatggcttcttttctgtacc
ctcctgccatagccacagatacacaacttacattctacactttaaactct
caaaacctataaattaagccttaactttggaggaactagatataaattct
caatatttcgggtccgctaacacctaaacaactaccgaagtgattaagtt
aatcgaattaagtgtgtgtatcagcagacgattgaaaatgcaaa
gaattcagtggtttcttttcctctgatcttttttcccccctcttccttcc
catagtgcgcacgaccttctagcacaattctcagtctttctggggcagag
ttgcccactccgacagtcctcggatccccgcgccctgggcgcggttcaca
ccggccggtcgactgcatactggcaagcactcaggttggaggccgggttc
tgcacgctggcgtagccgaagctggagtgctgctttgctttcagtctcag
gctggccaggctcgagttacatgtgtccctataaacgtacggaggagtcg
gcggcgcgtaaggacaggcgggcgtgggcaccgcggaattcagcgacggg
ctgctcaggttgttcaagttattcaggctattgaggctggagcccgggac
gccggtcaccgcggagggcaccatgctggacgacatactcatagatgaga
tggagttgggcggggaaaacatactctgagaggacaggggattgacgttc
atggagttgaagaaggggaagctcttggtggacagagacgctgacgtgag
gcccttggcagcccaattgttgtacgaatagccggggtacatgtcatcgt
agggctgcatgagcccgttgaactgcggcccaaagccattcttgcacagc
tcggcctgctggttgcgttcccgctttctccatttggcccggcgattctt
gaaccaaacctggggtagtgcagatagggatgagacagagggcacaggga
caatgagtttaaaactcgtaaaaatcgtctcaaaacaaagtaccagaacc
caacctgggccacactggaccttgcaagcatgcacatggactcttgctgt
cccaggtccatgcagtctacaccacgcggcgtggaaggcactgacatagc
taaaaggccctggtgcttgtcacaagccttagtatagctctagagcctca
ccctctcaacccaggagtctgggctggcagttctgggagccacagaagcc
atcaacttacagaatgcctggcggcctagggtgcccctgatctctagccc
tctttgggggttccaaaacagggtaaaatacccgaccttccgaacccttg
caactgctctattccaaaccaccggattcagtaaagaggaacaagccttg
ggagggtacgaatctcctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_128778620_128779830
seq2: B6Ng01-078P20.b_45_1238

seq1  GAATTCTTCTATCTCCTAGTATGATTCTAACACGAAGTAAAGAAAGCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTATCTCCTAGTATGATTCTAACACGAAGTAAAGAAAGCAAT  50

seq1  GAATCCCTGCTCTCAGGCATCCATGATCCCAAAGAGTCCTTAAACCTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCCTGCTCTCAGGCATCCATGATCCCAAAGAGTCCTTAAACCTTTT  100

seq1  ACTCCTTCACCTCCCACTTGACCGACTGAGTGGCCACACCCATTGAAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTCACCTCCCACTTGACCGACTGAGTGGCCACACCCATTGAAATC  150

seq1  TCTCCAAGGTACGATCAGCATTTGTTCCCTGCTTCCCTCTACTGGGAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAAGGTACGATCAGCATTTGTTCCCTGCTTCCCTCTACTGGGAATG  200

seq1  CTCCTCCCTCCCCTTGCTGAACAACCCTACAGATCTTTCAAAGCTAACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCCTCCCCTTGCTGAACAACCCTACAGATCTTTCAAAGCTAACTT  250

seq1  AGTGTTACCTGCTCTCGTTTTCTCGGACTAATACCTAACCCATGAAAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTACCTGCTCTCGTTTTCTCGGACTAATACCTAACCCATGAAAGGA  300

seq1  GAAGCATCCATCTATCTACTGCTCCATGTTTCCTGTTCCCATAGCACTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATCCATCTATCTACTGCTCCATGTTTCCTGTTCCCATAGCACTTA  350

seq1  GCTAAAAGTGCTCATCTTTTTATGTAAGGTAAAATGAGTCGCTTATACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAAGTGCTCATCTTTTTATGTAAGGTAAAATGAGTCGCTTATACTG  400

seq1  TTATATGTCATAAGACTGTGAGATCCTGGAAGGAGGAGCTGCTATATCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGTCATAAGACTGTGAGATCCTGGAAGGAGGAGCTGCTATATCAG  450

seq1  GAAGCATTTGAAAGAGGCAGGCAGCAATTTGATATACAAATTCAGTCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATTTGAAAGAGGCAGGCAGCAATTTGATATACAAATTCAGTCAGT  500

seq1  CAGTCTTTCGTTGAGTTCATTCAATTGGGCAAGGGAAATCTCCTTTCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTTCGTTGAGTTCATTCAATTGGGCAAGGGAAATCTCCTTTCTCC  550

seq1  AAACTTTTTCTAGCTAAGGATTTTTTTCTTTCTGTAGATTAAATACTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTTTCTAGCTAAGGATTTTTTTCTTTCTGTAGATTAAATACTAAA  600

seq1  TAAACTTTAACAACAAGGCTTCTTTAAACAAGCTGGCATCTTCTCGCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTTAACAACAAGGCTTCTTTAAACAAGCTGGCATCTTCTCGCTGG  650

seq1  TTTTGAAAATCAGACTGGGAATCTTACAGCCAAGGCAGACCTCAACAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAAATCAGACTGGGAATCTTACAGCCAAGGCAGACCTCAACAGCT  700

seq1  TTCTTTACTTAGCTATCATAACTGAACACTTAACTGAACATATTCAAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTACTTAGCTATCATAACTGAACACTTAACTGAACATATTCAAATA  750

seq1  CTTAGAAGTTCTTACTGGCAAACCTGCAAATGAATGCTTAAAAGAGTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAAGTTCTTACTGGCAAACCTGCAAATGAATGCTTAAAAGAGTGTG  800

seq1  TGTGGCAGGAGAAATGACTATAAAACTGTCAAGTAAGGAAAGCATTGATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCAGGAGAAATGACTATAAAACTGTCAAGTAAGGAAAGCATTGATC  850

seq1  TGCTTCTCTGGGTCTAATTGCTGCCCTGTGTAACTCAACGGGGATTCTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTCTGGGTCTAATTGCTGCCCTGTGTAACTCAACGGGGATTCTCA  900

seq1  GAGTGGATTACACAGACTGTGAATCCAGCCCAGATGTGGGCTCCAGGATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGATTACACAGACTGTGAATCCAGCCCAGATGTGGGCTCCAGGATG  950

seq1  GCTCAGCTTGCTTGCCAATAAACTCCTTTTTATGGCTTCTTTTCTGTACC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGCTTGCTTGCCAATAAACTCCTTTTTATGGCTTCTTTTCTGTACC  1000

seq1  CTCCTGCCATAGCCACAGATACACAACTTACATTCTACACTTTAAACTCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCCATAGCCACAGATACACAACTTACATTCTACACTTTAAACTCT  1050

seq1  CAAAAACCTATAAATTAGGCCCTTAACTTTGGAGGAACTAGATATAAATT  1100
      | ||||||||||||||| | |||||||||||||||||||||||||||| |
seq2  C-AAAACCTATAAATTAAG-CCTTAACTTTGGAGGAACTAGATATAAA-T  1097

seq1  TCTCAATATTTCGAGTTCCCGCTAACACCTAAACAAACTACCG-AGTGAT  1149
      ||||||||||||| ||  |||||||||||||||| |||||||| ||||||
seq2  TCTCAATATTTCGGGT--CCGCTAACACCTAAAC-AACTACCGAAGTGAT  1144

seq1  TTAGGTTTTACATCAGAATTAAAGTGTGTGTATCAGCCAGGAAAGAGTTG  1199
      | ||   ||| ||| ||||| ||||||||||||||| |||  | || |||
seq2  TAAG---TTA-ATC-GAATT-AAGTGTGTGTATCAG-CAG--ACGA-TTG  1184

seq1  GAAAAATGCAAA  1211
        ||||||||||
seq2  --AAAATGCAAA  1194

seq1: chr3_128920776_128921960
seq2: B6Ng01-078P20.g_67_1236 (reverse)

seq1  GGAGGAGAGTCGGTACCCTCCCAAGGCCCTGGTCCTCATTACTGGAT-CG  49
      |||||||| || |||||||||||||| | || ||||| |||||| || ||
seq2  GGAGGAGATTC-GTACCCTCCCAAGG-CTTGTTCCTCTTTACTGAATCCG  48

seq1  GTGGTTTTGGAATAGAAGCAAGTTTGCAAGGTTCGGGAAGGGTCCCGTGT  99
      |||| |||||||||| ||||   |||||||| |  ||||||    || ||
seq2  GTGG-TTTGGAATAG-AGCA--GTTGCAAGGGTTCGGAAGG---TCGGGT  91

seq1  ATTTTACACTGTTTTTGGACCCCCAAAGAGGGCCTAGAGGATCAAGGGGC  149
      ||||||| ||||||| | |||||||||||||| ||||| |||| ||||||
seq2  ATTTTACCCTGTTTTGGAACCCCCAAAGAGGG-CTAGA-GATC-AGGGGC  138

seq1  ACCCTAGGCCGCCAGGCATTCTGTGAAGTTGATGGCTTCTGTGGCTCCCA  199
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ACCCTAGGCCGCCAGGCATTCTGT-AAGTTGATGGCTTCTGTGGCTCCCA  187

seq1  GAACTGCCAGCCCAGACTCCTGGGTTGGAGAGGGTGAGGCCTCTAGAGCT  249
      |||||||||||||||||||||||||| |||||||||||| ||||||||||
seq2  GAACTGCCAGCCCAGACTCCTGGGTT-GAGAGGGTGAGG-CTCTAGAGCT  235

seq1  ATACTAAGGCTTGTGACAAGCACCAGGGCCTTTTAGCTATTGTCAGTGCC  299
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATACTAAGGCTTGTGACAAGCACCAGGGCCTTTTAGCTA-TGTCAGTGCC  284

seq1  TTCCACGCCGCGTGGTGTAGACTGCATGGACCTGGGACAGCAAGAGTCCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACGCCGCGTGGTGTAGACTGCATGGACCTGGGACAGCAAGAGTCCA  334

seq1  TGTGCATGCTTGCAAGGTCCAGTGTGGCCCAGGTTGGGTTCTGGTACTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATGCTTGCAAGGTCCAGTGTGGCCCAGGTTGGGTTCTGGTACTTT  384

seq1  GTTTTGAGACGATTTTTACGAGTTTTAAACTCATTGTCCCTGTGCCCTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGAGACGATTTTTACGAGTTTTAAACTCATTGTCCCTGTGCCCTCT  434

seq1  GTCTCATCCCTATCTGCACTACCCCAGGTTTGGTTCAAGAATCGCCGGGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCATCCCTATCTGCACTACCCCAGGTTTGGTTCAAGAATCGCCGGGC  484

seq1  CAAATGGAGAAAGCGGGAACGCAACCAGCAGGCCGAGCTGTGCAAGAATG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGAGAAAGCGGGAACGCAACCAGCAGGCCGAGCTGTGCAAGAATG  534

seq1  GCTTTGGGCCGCAGTTCAACGGGCTCATGCAGCCCTACGATGACATGTAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGGCCGCAGTTCAACGGGCTCATGCAGCCCTACGATGACATGTAC  584

seq1  CCCGGCTATTCGTACAACAATTGGGCTGCCAAGGGCCTCACGTCAGCGTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGCTATTCGTACAACAATTGGGCTGCCAAGGGCCTCACGTCAGCGTC  634

seq1  TCTGTCCACCAAGAGCTTCCCCTTCTTCAACTCCATGAACGTCAATCCCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCACCAAGAGCTTCCCCTTCTTCAACTCCATGAACGTCAATCCCC  684

seq1  TGTCCTCTCAGAGTATGTTTTCCCCGCCCAACTCCATCTCATCTATGAGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTCTCAGAGTATGTTTTCCCCGCCCAACTCCATCTCATCTATGAGT  734

seq1  ATGTCGTCCAGCATGGTGCCCTCCGCGGTGACCGGCGTCCCGGGCTCCAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCGTCCAGCATGGTGCCCTCCGCGGTGACCGGCGTCCCGGGCTCCAG  784

seq1  CCTCAATAGCCTGAATAACTTGAACAACCTGAGCAGCCCGTCGCTGAATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAATAGCCTGAATAACTTGAACAACCTGAGCAGCCCGTCGCTGAATT  834

seq1  CCGCGGTGCCCACGCCCGCCTGTCCTTACGCGCCGCCGACTCCTCCGTAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCGGTGCCCACGCCCGCCTGTCCTTACGCGCCGCCGACTCCTCCGTAC  884

seq1  GTTTATAGGGACACATGTAACTCGAGCCTGGCCAGCCTGAGACTGAAAGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATAGGGACACATGTAACTCGAGCCTGGCCAGCCTGAGACTGAAAGC  934

seq1  AAAGCAGCACTCCAGCTTCGGCTACGCCAGCGTGCAGAACCCGGCCTCCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGCACTCCAGCTTCGGCTACGCCAGCGTGCAGAACCCGGCCTCCA  984

seq1  ACCTGAGTGCTTGCCAGTATGCAGTCGACCGGCCGGTGTGAACCGCGCCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAGTGCTTGCCAGTATGCAGTCGACCGGCCGGTGTGAACCGCGCCC  1034

seq1  AGGGCGCGGGGATCCGAGGACTGTCGGAGTGGGCAACTCTGCCCCAGAAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCGCGGGGATCCGAGGACTGTCGGAGTGGGCAACTCTGCCCCAGAAA  1084

seq1  GACTGAGAATTGTGCTAGAAGGTCGTGCGCACTATGGGAAGGAAGAGGGG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAGAATTGTGCTAGAAGGTCGTGCGCACTATGGGAAGGAAGAGGGG  1134

seq1  GGAAAAAAGATCAGAGGAAAAGAAACCACTGAATTC  1185
      ||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAAGATCAGAGGAAAAGAAACCACTGAATTC  1170