BAC Information

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BAC

Clone NameB6Ng01-079B13
Chromosome3 (Build37)
Map Location 30,503,056 - 30,653,077
singlet/doubletdoublet
Overlap geneMynn, Lrrc34, 4930558O21Rik, E230002P03Rik, Samd7
Upstream gene6130401L20Rik, LOC100040676, Evi1, Mds1, LOC100040727, LOC100040734, LOC100040749, Arpm1
Downstream geneTloc1, Gpr160, Phc3, LOC100040809, Prkci, Skil, Cldn11, Slc7a14, LOC625125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079B13.bB6Ng01-079B13.g
ACCDH894605DH894606
length1,138905
definitionDH894605|Mus musculus domesticus DNA, BAC clone: B6Ng01-079B13, 5' end.DH894606|Mus musculus domesticus DNA, BAC clone: B6Ng01-079B13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,651,917 - 30,653,077)(30,503,056 - 30,503,965)
sequence
gaattcaaaactgagtctgcagaaccccttatgctggagtggaatgtggg
aaagggcctcatgtcatcgctgctaagaatctcagacagtttggtgagaa
cccggtaaacaccactagatcaacagcagataacatttcatttttttgtt
tttaattgtcagtctcatgactggtgctattttcctgttattctagaaag
gggaaggcaagggcctgttaaaatcatatttctgggggccccagggtagc
tcagcaaatcaaggtgcttcctgtcaagcctaaaacttgagtttgattgg
tctgctctttcttgtcctaattatcttcacttctaaggtacaatgctatg
tgtttgatacgtgcttacgttggaagaatggttaaatcaagataattaac
acatctaacctctcctatctttatggtgtagacatttgaagtccatcaga
aatttgtacgtatgtaacacattattataagttgtgaccattatcctgta
ataaacatctccggagtgaaatcagaataaaagccaaattctcactatgg
catatgagaccacatgttactcgttggtttggcttggtttggggcactga
gaattgaatccaggtcctcatggatgctaatcaggtactctgctgcagag
ctgcgctatgccctcatccccagtcatgaactgccccaagaagttaactc
tcagatcaagtctctttgaagcccctcagctcttgacacattgccagtct
tccctcattcatgattaaattggtgcctgggagactcgcacattggtagc
accagaagctcaatcatgaaaccaagtgtgcaaagtgcataggcttaact
cccacccgcttctccagcccctgtgacacaggcaccgttcacagggctcc
acagcctgggtcaagtgctcattgctcatacctgagtagaagtgactgga
tagcggtttggcatattgcatttggggagaccggagatcaaattgggacg
acacaactggctggtcagttggagctatactggaagacaagacatctcta
ggaggggaaaaaaaaagacgtagaatagtcgaaatgcttactctagggag
tcattgctatggataatcaaggtcactgtaacttcatt
gaattccatctgacagacttattcaccaaaaaaaaaaaaaaaaggctcta
tttcaattttgcaaattctgaatttaaagtaggttttcctttggtcttca
tgtccctcaggccctctctcacacagtctctgtccgttgctgcttctagg
gtatttggagtagagttgttgaagaaccacctcaggcctcatggcctcat
ggccttctagtgctcatatttaaatggcaacgtgcaggactttctgattg
tggttctggaaagtaacttcgtggaaatgcaagtagcattaagtctgttc
ccgttgtcaacctatccaaagcttgaatcaagccagaggcatcactgtgt
ttctcttaagggtcttaaccgttgggctccagaggtgcattggtcaagtg
cctgccgtgcaaggatgaggacctgatttcgggtccttagccaccaaata
aaagcaattttgtgataccagtgctgctggggtggagctcattagcccgc
ccgcccgccctcctgccagccagccagccagccagcctagcagaatctgg
gagcttctagctcagggaaagatcctgtctcatataatatggtgtgaagg
gcaacagaagaagacacccataatcgtctgcggcttccatacacaaatac
acacacatctgcatgcatgtgtgcacaggaacacacacagactatgccaa
aagatgcttattgctgcctctttatagtaagtacgctcttcagagtctta
taatagagatatattgtttcctctgtataaaagctacgccgatactcata
catacctattgtgggagaaaagtagaaagggcagaatcaaaaggatctgg
acatatatgcttgccttctttccttctttctaatagaaacatgctcacac
taggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_30651917_30653077
seq2: B6Ng01-079B13.b_46_1183 (reverse)

seq1  AATGAAGTTAACAGTGAACTTTGATTATCACACTAAGCAATAGAAACTCC  50
      ||||||||| |||||| || |||||||||   |  ||||||    |||||
seq2  AATGAAGTT-ACAGTG-ACCTTGATTATC---CATAGCAAT---GACTCC  42

seq1  CTAAAATTACAGCCATTTTCTACCTATTTTATGTCTTTTTTTTTCCCCCT  100
      ||| | |   |||   |||| | ||||| || |||||||||||| |||||
seq2  CTAGAGT--AAGC--ATTTCGA-CTATTCTACGTCTTTTTTTTT-CCCCT  86

seq1  CCTAGAGATGTCTTGTCTTCCAGTATAGCTCCAACTGACCCAAGCCAGTT  150
      ||||||||||||||||||||||||||||||||||||||||  ||||||||
seq2  CCTAGAGATGTCTTGTCTTCCAGTATAGCTCCAACTGACC--AGCCAGTT  134

seq1  TTGTGTTCCTTCCCAATTTGGATCCTCCGGTCT-CCCAAATGCAAATATG  199
       |||    | ||||||||| ||| ||||||||| ||||||||| ||||||
seq2  GTGT----CGTCCCAATTT-GAT-CTCCGGTCTCCCCAAATGC-AATATG  177

seq1  CCAAACCCGCTATCCAGTCACTTCTACTCAGGTATGAGCAATGAGCACTT  249
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAA-CCGCTATCCAGTCACTTCTACTCAGGTATGAGCAATGAGCACTT  226

seq1  GACCCAGGCTGTGGAGCCCTGTGAACGGTGCCTGTGTCACAGGGGCTGGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAGGCTGTGGAGCCCTGTGAACGGTGCCTGTGTCACAGGGGCTGGA  276

seq1  GAAGCGGGTGGGAGTTAAGCCTATGCACTTTGCACACTTGGTTTCCTGAT  349
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GAAGCGGGTGGGAGTTAAGCCTATGCACTTTGCACACTTGGTTTCATGAT  326

seq1  TGAGCTTCTGGTGCTACCAATGTGCGAGTCTCCCAGGCACCAATTTAATC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTTCTGGTGCTACCAATGTGCGAGTCTCCCAGGCACCAATTTAATC  376

seq1  ATGAATGAGGGAAGACTGGCAATGTGTCAAGAGCTGAGGGGCTTCAAAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGAGGGAAGACTGGCAATGTGTCAAGAGCTGAGGGGCTTCAAAGA  426

seq1  GACTTGATCTGAGAGTTAACTTCTTGGGGCAGTTCATGACTGGGGATGAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGATCTGAGAGTTAACTTCTTGGGGCAGTTCATGACTGGGGATGAG  476

seq1  GGCATAGCGCAGCTCTGCAGCAGAGTACCTGATTAGCATCCATGAGGACC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATAGCGCAGCTCTGCAGCAGAGTACCTGATTAGCATCCATGAGGACC  526

seq1  TGGATTCAATTCTCAGTGCCCCAAACCAAGCCAAACCAACGAGTAACATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTCAATTCTCAGTGCCCCAAACCAAGCCAAACCAACGAGTAACATG  576

seq1  TGGTCTCATATGCCATAGTGAGAATTTGGCTTTTATTCTGATTTCACTCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTCATATGCCATAGTGAGAATTTGGCTTTTATTCTGATTTCACTCC  626

seq1  GGAGATGTTTATTACAGGATAATGGTCACAACTTATAATAATGTGTTACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGTTTATTACAGGATAATGGTCACAACTTATAATAATGTGTTACA  676

seq1  TACGTACAAATTTCTGATGGACTTCAAATGTCTACACCATAAAGATAGGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTACAAATTTCTGATGGACTTCAAATGTCTACACCATAAAGATAGGA  726

seq1  GAGGTTAGATGTGTTAATTATCTTGATTTAACCATTCTTCCAACGTAAGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTAGATGTGTTAATTATCTTGATTTAACCATTCTTCCAACGTAAGC  776

seq1  ACGTATCAAACACATAGCATTGTACCTTAGAAGTGAAGATAATTAGGACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTATCAAACACATAGCATTGTACCTTAGAAGTGAAGATAATTAGGACA  826

seq1  AGAAAGAGCAGACCAATCAAACTCAAGTTTTAGGCTTGACAGGAAGCACC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGCAGACCAATCAAACTCAAGTTTTAGGCTTGACAGGAAGCACC  876

seq1  TTGATTTGCTGAGCTACCCTGGGGCCCCCAGAAATATGATTTTAACAGGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTGCTGAGCTACCCTGGGGCCCCCAGAAATATGATTTTAACAGGC  926

seq1  CCTTGCCTTCCCCTTTCTAGAATAACAGGAAAATAGCACCAGTCATGAGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCCTTCCCCTTTCTAGAATAACAGGAAAATAGCACCAGTCATGAGA  976

seq1  CTGACAATTAAAAACAAAAAAATGAAATGTTATCTGCTGTTGATCTAGTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAATTAAAAACAAAAAAATGAAATGTTATCTGCTGTTGATCTAGTG  1026

seq1  GTGTTTACCGGGTTCTCACCAAACTGTCTGAGATTCTTAGCAGCGATGAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTACCGGGTTCTCACCAAACTGTCTGAGATTCTTAGCAGCGATGAC  1076

seq1  ATGAGGCCCTTTCCCACATTCCACTCCAGCCTAAGGGGTTCTGCAGACTC  1149
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATGAGGCCCTTTCCCACATTCCACTCCAGCATAAGGGGTTCTGCAGACTC  1126

seq1  AGTTTTGAATTC  1161
      ||||||||||||
seq2  AGTTTTGAATTC  1138

seq1: chr3_30503056_30503965
seq2: B6Ng01-079B13.g_69_973

seq1  GAATTCCATCTGACAGACTTATTCACCAAAAAAAAAAAAAAAAGGCTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCTGACAGACTTATTCACCAAAAAAAAAAAAAAAAGGCTCTA  50

seq1  TTTCAATTTTGCAAATTCTGAATTTAAAGTAGGTTTTCCTTTGGTCTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATTTTGCAAATTCTGAATTTAAAGTAGGTTTTCCTTTGGTCTTCA  100

seq1  TGTCCCTCAGGCCCTCTCTCACACAGTCTCTGTCCGTTGCTGCTTCTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTCAGGCCCTCTCTCACACAGTCTCTGTCCGTTGCTGCTTCTAGG  150

seq1  GTATTTGGAGTAGAGTTGTTGAAGAACCACCTCAGGCCTCATGGCCTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGGAGTAGAGTTGTTGAAGAACCACCTCAGGCCTCATGGCCTCAT  200

seq1  GGCCTTCTAGTGCTCATATTTAAATGGCAACGTGCAGGACTTTCTGATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTCTAGTGCTCATATTTAAATGGCAACGTGCAGGACTTTCTGATTG  250

seq1  TGGTTCTGGAAAGTAACTTCGTGGAAATGCAAGTAGCATTAAGTCTGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTGGAAAGTAACTTCGTGGAAATGCAAGTAGCATTAAGTCTGTTC  300

seq1  CCGTTGTCAACCTATCCAAAGCTTGAATCAAGCCAGAGGCATCACTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTGTCAACCTATCCAAAGCTTGAATCAAGCCAGAGGCATCACTGTGT  350

seq1  TTCTCTTAAGGGTCTTAACCGTTGGGCTCCAGAGGTGCATTGGTCAAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTAAGGGTCTTAACCGTTGGGCTCCAGAGGTGCATTGGTCAAGTG  400

seq1  CCTGCCGTGCAAGGATGAGGACCTGATTTCGGGTCCTTAGCCACCAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCGTGCAAGGATGAGGACCTGATTTCGGGTCCTTAGCCACCAAATA  450

seq1  AAAGCAGTTTTGTGATACCAGTGCTGCTGGGGTGGAGCTCATTAGCCCGC  500
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAATTTTGTGATACCAGTGCTGCTGGGGTGGAGCTCATTAGCCCGC  500

seq1  CCGCCCGCCCTCCTGCCAGCCAGCCAGCCAGCCAGCCTAGCAGAATCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCCGCCCTCCTGCCAGCCAGCCAGCCAGCCAGCCTAGCAGAATCTGG  550

seq1  GAGCTTCTAGCTCAGGGAAAGATCCTGTCTCATATAATAGGGTGTGAAGG  600
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GAGCTTCTAGCTCAGGGAAAGATCCTGTCTCATATAATATGGTGTGAAGG  600

seq1  GCAACAGAGGAAGACACGCAGAATCGTCTGCGGCTTCCATACACAAATAC  650
      |||||||| |||||||| || |||||||||||||||||||||||||||||
seq2  GCAACAGAAGAAGACACCCATAATCGTCTGCGGCTTCCATACACAAATAC  650

seq1  ACACACATCTGCATGCATGTGTGCACAGGAACACACACAGACTATGCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATCTGCATGCATGTGTGCACAGGAACACACACAGACTATGCCAA  700

seq1  AAGATGCTTATTGCTGCCCCTTTATAGTAAGTAGGCTCTTCAGAGTCTTA  750
      |||||||||||||||||| |||||||||||||| ||||||||||||||||
seq2  AAGATGCTTATTGCTGCCTCTTTATAGTAAGTACGCTCTTCAGAGTCTTA  750

seq1  TAATAGAGATATATTGTTTCCTCTGTATAAAAGCTAGGCTGATAGTCATA  800
      |||||||||||||||||||||||||||||||||||| || |||| |||||
seq2  TAATAGAGATATATTGTTTCCTCTGTATAAAAGCTACGCCGATACTCATA  800

seq1  CATTCCTAGTTGTGGGAGAAAAGTAGAAAGGGCAGAAGCAAAAAGGATCT  850
      ||| |||| |||||||||||||||||||||||||||| | ||||||||||
seq2  CATACCTA-TTGTGGGAGAAAAGTAGAAAGGGCAGAATC-AAAAGGATCT  848

seq1  GGACAGATTATGCTTGCCTTCTTTCCTTCATTTCTAATAGAAGCATGCGC  900
      ||||| | ||||||||||||||||||||| |||||||||||| ||||| |
seq2  GGACATA-TATGCTTGCCTTCTTTCCTTC-TTTCTAATAGAAACATGCTC  896

seq1  ACAAGTAGGG  910
      || | |||||
seq2  AC-ACTAGGG  905