BAC Information

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BAC

Clone NameB6Ng01-079D22
Chromosome3 (Build37)
Map Location 95,396,785 - 95,532,127
singlet/doubletdoublet
Overlap geneGolph3l, EG668457, Ensa, Mcl1, Adamtsl4
Upstream geneEG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1
Downstream geneEcm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079D22.bB6Ng01-079D22.g
ACCDH894710DH894711
length1,024373
definitionDH894710|Mus musculus domesticus DNA, BAC clone: B6Ng01-079D22, 5' end.DH894711|Mus musculus domesticus DNA, BAC clone: B6Ng01-079D22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,531,086 - 95,532,127)(95,396,785 - 95,397,163)
sequence
gaattcaagaattaagagtatgaattcaagaattcaatcttaagttcaag
tcagctatggctaccaagtaaaaaaataaaataaaaaatgaaaaataaac
ttatctcaaaaaatataaaaatgagtagccttggccagctttgaatttgt
gactttcctggagctgggatgatagcatgtgccactgtgtacaggtcatt
ttctaccctttttcctcattgtgcatcttactgctatgtctacatactgc
taaaaatttgttcttgtttactttgtgtcttcctggaaattgaacccaag
ggccctcgcgtgcacatcagcaaacactatcacggcgctgtatttctatc
attctagttggtccttatttaagagctctgtaatttttagttctcagaat
tcacttttgcgtgagtgtatacatcgtgggcaagcacgctaccactgagc
tacactcatctcccagaattcatgtctgtgttttgatcctatttaaattt
gctatgaagatgagaaggtagctcagtggatcgagtggctagcattcgaa
aggctctatgtttgaacctcagaacagtggggcttatctataatcccaac
actccagatgtggagacaggaggatcagaaatacaaggtcatttttggct
acataccaagttcaaggccagcctgggttacatgctgtcttaaaataagt
aaatcggatgtatcttttttttttcccttaaacatttattttttatctgt
gtgagtgttttgcctgcatttatatatgtataccacatgtgtgtctggtg
cccttgaaggctagggtggtcatggcttatgcctttagttcagcacctgg
aagacagaggcagtcaatctctgccagttcaaggccagcctggtctatag
acagccaggccacatagaaacagcctgtcgaagaaagagagagagagaga
gagagagagatagagagaggggagagataaaaaaatacataaaattctac
cttgttactcaggaaataagccac
tagaccagcctaatgcgtgtacatagtgaattccaggacagccaggacta
cgtagagagaccttgtcaaaacaaggagcagggggaacaataggttttta
gtttttttgtttttcattttcttctgtggatcttgtaacaattttttaag
ttttttttttatttgtatgtacgtatctgtagagatggctcaaccattaa
gaacactggctgctcttccagagatcctgagttcaatttccagcagccag
atggtggctcacaaccatttgtaatgtaatctgttaccctattctggtat
gcagctatacaggcagatagagcactcatatagataaaataaatacatct
tttttggggggggaggattgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_95531086_95532127
seq2: B6Ng01-079D22.b_46_1068 (reverse)

seq1  TGGCTTTATTTCCTGAGTAACCAAAGTTAGAATTCTCTCTCTCTCTCTCT  50
      |||| ||||||||||||||||  ||| ||||||| | | | | | | | |
seq2  TGGC-TTATTTCCTGAGTAAC--AAGGTAGAATTTTATGTATTTTTTTAT  47

seq1  CTCTCTCTCTCTCTCCCCCTCTCTCTCTACACTCTCTCTC-CTCTCTCTC  99
      ||||           ||||||||||| |   ||||||||| |||||||||
seq2  CTCT-----------CCCCTCTCTCTAT---CTCTCTCTCTCTCTCTCTC  83

seq1  TCTCTTTCTTTCGACAGGCTGTTTCTATGTGGCCCTGGCTGTCTATAGAC  149
      |||||||| ||||||||||||||||||||||| |||||||||||||||||
seq2  TCTCTTTC-TTCGACAGGCTGTTTCTATGTGG-CCTGGCTGTCTATAGAC  131

seq1  CAGGCTGGCCTTGAACTGGCAGAGATTGACTGCCTCTGTCTTCCAGGTGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGGCCTTGAACTGGCAGAGATTGACTGCCTCTGTCTTCCAGGTGC  181

seq1  TGGAACTAAAGGCATAAGCCATGACCACCCTAGCCTTCAAGGGCACCAGA  249
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-GAACTAAAGGCATAAGCCATGACCACCCTAGCCTTCAAGGGCACCAGA  230

seq1  CACACATGTGGTATACATATATAAATGCAGGCAAAACACTCACACAGATA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATGTGGTATACATATATAAATGCAGGCAAAACACTCACACAGATA  280

seq1  AAAAATAAATGTTTAAGGGAAAAAAAAAAGATACATCCGATTTACTTATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAATGTTTAAGGGAAAAAAAAAAGATACATCCGATTTACTTATT  330

seq1  TTAAGACAGCATGTAACCCAGGCTGGCCTTGAACTTGGTATGTAGCCAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGACAGCATGTAACCCAGGCTGGCCTTGAACTTGGTATGTAGCCAAA  380

seq1  AATGACCTTGTATTTCTGATCCTCCTGTCTCCACATCTGGAGTGTTGGGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACCTTGTATTTCTGATCCTCCTGTCTCCACATCTGGAGTGTTGGGA  430

seq1  TTATAGATAAGCCCCACTGTTCTGAGGTTCAAACATAGAGCCTTTCGAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGATAAGCCCCACTGTTCTGAGGTTCAAACATAGAGCCTTTCGAAT  480

seq1  GCTAGCCACTCGATCCACTGAGCTACCTTCTCATCTTCATAGCAAATTTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCCACTCGATCCACTGAGCTACCTTCTCATCTTCATAGCAAATTTA  530

seq1  AATAGGATCAAAACACAGACATGAATTCTGGGAGATGAGTGTAGCTCAGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGATCAAAACACAGACATGAATTCTGGGAGATGAGTGTAGCTCAGT  580

seq1  GGTAGCGTGCTTGCCCACGATGTATACACTCACGCAAAAGTGAATTCTGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCGTGCTTGCCCACGATGTATACACTCACGCAAAAGTGAATTCTGA  630

seq1  GAACTAAAAATTACAGAGCTCTTAAATAAGGACCAACTAGAATGATAGAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAAAAATTACAGAGCTCTTAAATAAGGACCAACTAGAATGATAGAA  680

seq1  ATACAGCGCCGTGATAGTGTTTGCTGATGTGCACGCGAGGGCCCTTGGGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGCGCCGTGATAGTGTTTGCTGATGTGCACGCGAGGGCCCTTGGGT  730

seq1  TCAATTTCCAGGAAGACACAAAGTAAACAAGAACAAATTTTTAGCAGTAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTCCAGGAAGACACAAAGTAAACAAGAACAAATTTTTAGCAGTAT  780

seq1  GTAGACATAGCAGTAAGATGCACAATGAGGAAAAAGGGTAGAAAATGACC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACATAGCAGTAAGATGCACAATGAGGAAAAAGGGTAGAAAATGACC  830

seq1  TGTACACAGTGGCACATGCTATCATCCCAGCTCCAGGAAAGTCACAAATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACACAGTGGCACATGCTATCATCCCAGCTCCAGGAAAGTCACAAATT  880

seq1  CAAAGCTGGCCAAGGCTACTCATTTTTATATTTTTTGAGATAAGTTTATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTGGCCAAGGCTACTCATTTTTATATTTTTTGAGATAAGTTTATT  930

seq1  TTTCATTTTTTATTTTATTTTTTTACTTGGTAGCCATAGCTGACTTGAAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTTTTATTTTATTTTTTTACTTGGTAGCCATAGCTGACTTGAAC  980

seq1  TTAAGATTGAATTCTTGAATTCATACTCTTAATTCTTGAATTC  1042
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATTGAATTCTTGAATTCATACTCTTAATTCTTGAATTC  1023

seq1: chr3_95396785_95397163
seq2: B6Ng01-079D22.g_69_447

seq1  GAATTCTAGACCAGCCTAATGCGTGTACATAGTGAATTCCAGGACAGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGACCAGCCTAATGCGTGTACATAGTGAATTCCAGGACAGCCA  50

seq1  GGACTACGTAGAGAGACCTTGTCAAAACAAGGAGCAGGGGGAACAATAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTACGTAGAGAGACCTTGTCAAAACAAGGAGCAGGGGGAACAATAGG  100

seq1  TTTTTAGTTTTTTTGTTTTTCATTTTCTTCTGTGGATCTTGTAACAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGTTTTTTTGTTTTTCATTTTCTTCTGTGGATCTTGTAACAATTT  150

seq1  TTTAAGTTTTTTTTTTATTTGTATGTACGTATCTGTAGAGATGGCTCAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTTTTTTTTTTATTTGTATGTACGTATCTGTAGAGATGGCTCAAC  200

seq1  CATTAAGAACACTGGCTGCTCTTCCAGAGATCCTGAGTTCAATTTCCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAGAACACTGGCTGCTCTTCCAGAGATCCTGAGTTCAATTTCCAGC  250

seq1  AGCCAGATGGTGGCTCACAACCATTTGTAATGTAATCTGTTACCCTATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGATGGTGGCTCACAACCATTTGTAATGTAATCTGTTACCCTATTC  300

seq1  TGGTATGCAGCTATACAGGCAGATAGAGCACTCATATAGATAAAATAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATGCAGCTATACAGGCAGATAGAGCACTCATATAGATAAAATAAAT  350

seq1  ACATCTTTTTTGGGGGGGGAGGATTGGGG  379
      |||||||||||||||||||||||||||||
seq2  ACATCTTTTTTGGGGGGGGAGGATTGGGG  379