BAC Information

Click to search

BAC

Clone NameB6Ng01-079G02
Chromosome3 (Build37)
Map Location 49,208,905 - 49,209,578
singlet/doubletsinglet
Overlap geneLOC676568
Upstream gene1700018B24Rik, LOC100039404, EG666230, 4932443G14, LOC545519
Downstream geneLOC666247, LOC100039579, LOC100039587, LOC638779, Pcdh18, LOC100039628, LOC639469, Slc7a11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079G02.bB6Ng01-079G02.g
ACCDH894804DH894805
length6731,223
definitionDH894804|Mus musculus domesticus DNA, BAC clone: B6Ng01-079G02, 5' end.DH894805|Mus musculus domesticus DNA, BAC clone: B6Ng01-079G02, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccttcctgtggaccttacttctgaaaactaatagttacattagac
ccttgctttcttttcatttttgattttgtctttttggttgtctatctttt
tttccttttcaaaaagtatgttcttcattgattctctgtgaatttctcat
catgcaaacctgtaacattcatattcctgtccttacatatcttcctcttc
cctggtaacttccccccaaaattaaaaaaaaaattaaaaattaaataaag
ttttaaattaaaattaaactagagaggaggggttatgaagatgggactta
gaggagcatagtgcaatcaggatatgaagtaaataattaaagtattaaaa
attattaaggcatactgttttatagtaaaactaagagctacagaaaacag
aagacttaggtacctaagactgaagtacctgaagtaatgcaaacatacac
tactctctctctctctctctctctctctctctctatgtatatgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtagga
atagcactaaaagaacaatttatattatataacatatacttctttttttt
attattcattatgtcacatattttgacatatgtgtgtgtatgtgtgtgtg
tgtgtgtgtgtgtacatataatt
gaattccttgtttttaataactgcatagcactacattgtgtaaatgttcc
acattttctgtatgcattgctcgggtaagggacatctgggttctttccag
cttctggctattataaataaggctgctacgaacatagtagagcatgtgtc
cttattacatgttggagcatcttctgggtatatgcgcgggaatggtattg
ctgaatactccactagtactatgtccaatttctgaggaaccaccaaactg
attttccagagtggttgtaccagattgcaattccactataggtggaggag
tattcctttttctccccatccatgccagcatctgctgtcacctgagtttt
tgatcttagccattctgattggtgtgaggtggaatctcagggttgttttg
atttgcatttccatgataacctaggatttggaacatatttttagatgctt
cttagcatttcagtattgttcagttgagaattctttgtttagccctgtac
cccatttttaatagagttatttgtttgtctgttattagccatctatcaga
cagaggattagaaaagatcttttcccaatatgtggtttggcttttttgtc
ttattgacagtgttctttgactcacagaagctttgcaattttatgaggtc
ccatttgttgattggtgatcttacatcacaagccattgctgttcaggaat
ttttcccttgtgcccatatgttcgaggctcttccccactttctcttctat
aagtttcagtgtatctggttttatgtgaaggtccttgatcatcttgcact
tgagttttgtacaaggagctaagtccagcttctttgagttctttgtatat
attggatattcatcccctatcaggatgaattagggaaacaacacccttca
caatagtcacaaataatataaaataccttggcatgactcttagtaggaac
tgaaagatctgtattttaagaacttcagtctctgagaaagaatcgaagat
ctcagagatgggaaagatcttcctagctcatggattgcaggataatatag
tcaaatgccttccttaggaaagcaacctatcagattcaaggcatccccat
caaaattcacctcatttctttaccggaatagacggaacaattgcgcaaat
tctctggatccaaacctaatacaaacaggatggccaaaccttgtataaga
gacctctccgtgtggtgatactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_49208905_49209578
seq2: B6Ng01-079G02.b_48_720

seq1  GAATTCCTTCCTGTGGACCTTACTTCTGAAAACTAATAGTTACATTAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCCTGTGGACCTTACTTCTGAAAACTAATAGTTACATTAGAC  50

seq1  CCTTGCTTTCTTTTCATTTTTGATTTTGTCTTTTTGGTTGTCTATCTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCTTTCTTTTCATTTTTGATTTTGTCTTTTTGGTTGTCTATCTTTT  100

seq1  TTTCCTTTTCAAAAAGTATGTTCTTCATTGATTCTCTGTGAATTTCTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTTCAAAAAGTATGTTCTTCATTGATTCTCTGTGAATTTCTCAT  150

seq1  CATGCAAACCTGTAACATTCATATTCCTGTCCTTACATATCTTCCTCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAAACCTGTAACATTCATATTCCTGTCCTTACATATCTTCCTCTTC  200

seq1  CCTGGTAACTTCCCCCCAAAATTAAAAAAAAAATTAAAAATTAAATAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTAACTTCCCCCCAAAATTAAAAAAAAAATTAAAAATTAAATAAAG  250

seq1  TTTTAAATTAAAATTAAACTAGAGAGGAGGGGTTATGAAGATGGGACTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATTAAAATTAAACTAGAGAGGAGGGGTTATGAAGATGGGACTTA  300

seq1  GAGGAGCATAGTGCAATCAGGATATGAAGTAAATAATTAAAGTATTAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGCATAGTGCAATCAGGATATGAAGTAAATAATTAAAGTATTAAAA  350

seq1  ATTATTAAGGCATACTGTTTTATAGTAAAACTAAGAGCTACAGAAAACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTAAGGCATACTGTTTTATAGTAAAACTAAGAGCTACAGAAAACAG  400

seq1  AAGACTTAGGTACCTAAGACTGAAGTACCTGAAGTAATGCAAACATACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTTAGGTACCTAAGACTGAAGTACCTGAAGTAATGCAAACATACAC  450

seq1  TACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATGTATATGTGTGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATGTATATGTGTGTGT  500

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTGTGTGTGTAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTGTGTGTGTAGGA  550

seq1  ATAGCACTAAAAGAACAATTTATATTATATAACATATACTACATTTTTAT  600
      |||||||||||||||||||||||||||||||||||||||| | ||||| |
seq2  ATAGCACTAAAAGAACAATTTATATTATATAACATATACTTC-TTTTTTT  599

seq1  TATTATTCATTATGTCACATATTTTGACATATGTGTGTGTATGTGTGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTCATTATGTCACATATTTTGACATATGTGTGTGTATGTGTGTGT  649

seq1  GTGTGTGTGTGTGTACATATAATT  674
      ||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTACATATAATT  673