BAC Information

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BAC

Clone NameB6Ng01-079H10
Chromosome3 (Build37)
Map Location 149,041,004 - 149,193,842
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040354, Lphn2, LOC100040368, LOC668893, EG381483
Downstream geneLOC100040620, LOC100040633, LOC100040455, LOC100040463, LOC623554
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079H10.bB6Ng01-079H10.g
ACCDH894866DH894867
length1,1581,091
definitionDH894866|Mus musculus domesticus DNA, BAC clone: B6Ng01-079H10, 5' end.DH894867|Mus musculus domesticus DNA, BAC clone: B6Ng01-079H10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(149,192,680 - 149,193,842)(149,041,004 - 149,042,120)
sequence
gaattcacccgccactctgaccacttcatcatgaactaaaacaacaacag
tgtccatgtcaaactgctaatcaaatagtaactgttatgattagtgtgcc
acatgcctcataatggcaacaatgccactgggtctctaaagacttccact
ggaagtatgagaagtcatattctaagtattaaagggaatgcagggcatta
aaaaaacttgcaatggacagacaaaacttcctctctcccatctcaaagaa
gaaagatgctcctggatttgaaaggcacaggtaagatgcgcttcacctcg
cactcatggctctttagggtagtggggcctgtcagacctccttccgtgtg
cagcagggagtgaggagtcagacgggagctgctgcctgctgcctttcttc
gaaactggtgaagtgcgtgtttcaatgatgtgcctgctgagcatggtgtg
cacatgccaggggcttaccagttactttctcttgttgttgtgtgtttgta
gagtcatcacactaatgagattagtgatgcccaaactgacccagctttcg
ttccatgggacactttgcatacatgtgacaaatataaagtgaacagctag
aaaatgtcactcggtgagagaacacaacttgtgggtgtccctgctaggca
cacacagtcggcagcatggggatgcttttgtagggtagatgaatcctgct
gggctctcaaccctaatactctgggataaaaaggcaagcctgttctctgt
gaaatgtgcttctgacatcagagcttatcccacgcttgttagactaggac
accatgtaaacactctcgccaaggcgtgtgtcccggacttctaaatgaac
aaaacgaaagctttcgcagcagatatgtagcctggtgtcaggatccgcgt
gagcagtgactggacagtatccagaaggttacgtgggtttgcagcgcacc
ttgtctccctgggatatttggaagaccagttcccttgtgatccaacacta
ttcctgtggtatgtaaatggccacacatctggctatcctttccccacctt
ctattactcctgtggtcatgatacttgagttacatttactgggaggtatg
tattgtacttaggacgttctgaacaatggccaggtcttactgacgagagc
tattagga
gaattcaccacaaccagaaggagcttatccgctggaaagaaagcatgttg
tctattcacagagaagagcaagctggagtactggaaggaaataataagtt
catatctaaaggggctagaagagatattaaagctttctatagtcgtcatt
catgacctaaagtgaacagaggaacaatccctgactgtgtctttaagcca
acaatcaggagtgtgcatgcatgtgtacacaggtgtgcatacatgtgagt
gtgggcatacagttgtggcacagtgcacacgcggagcatgaagacaattg
ttggctttcactcatcaccgtctaccttatttgagagttggtttccttgt
tggctgctgcatatgctgggctagctgccctgtgtgaatccagagttccg
gagactctcctcactctgacttacaacttttcatggagcattggagttag
atatgtggggcgtccaaactcaggtctttcacacttctatggtgagaaga
tggctctcatagccctccttctagtcccccccacagtgagcttgttctgg
ttggtgaaaacctgtaatgaaatacagatccccactacggtcgttaattt
taacttattggaaggtttcagatggaccagtgatgtgaaaccaaacatga
taaatacatattaggcagagtgttacgtgaaataaaaaattattgatgtg
tcctaaaatataattacatttaattttaagctaaaaatagaattaaaaga
ataagtcccattcatgatatcaataaaatattagtaactcagggataaat
ttagaaacaaacttctgaaggagatataaagaaaattacaaatgctgatg
cagtctttatgtaacacataaagaattaaaaagaaaactttccagagatc
tataacttacagcaaagtatttgtacgagacagtggaattattttatatt
tcatgcattccccacatgcatttcacgtgttaaataaataggagtttgag
gaaatttaaactctttttcctctacatttactagagatagcagcagactt
taggtaatttgagcaacttgtcatcattacaagaaaccact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_149192680_149193842
seq2: B6Ng01-079H10.b_45_1202 (reverse)

seq1  TCCTAATAGCTCT-GTCAGT-AGACCTGTGCCATTGCTCAGAACTGCTCT  48
      ||||||||||||| |||||| ||||||| ||||||| |||||||   || 
seq2  TCCTAATAGCTCTCGTCAGTAAGACCTG-GCCATTGTTCAGAAC--GTCC  47

seq1  TAGTTCCACTACATACTTTCCCAGTCATTGTTAACTTCAAGTATCATTGA  98
      ||  | || |||||||  ||||||| | || |||| |||||||||||   
seq2  TAAGTACAATACATAC-CTCCCAGTAAATG-TAAC-TCAAGTATCATGAC  94

seq1  CACAGGAAGTATTAGAAGGTGGGGAAAGGATAGCCAGATGTGTGGCCATT  148
      |||||| |||| ||||||||||||||||||||||||||||||||||||||
seq2  CACAGG-AGTAATAGAAGGTGGGGAAAGGATAGCCAGATGTGTGGCCATT  143

seq1  TACATACCACAGG-ATAGTGTTGGATCACAAGGGAACTGGTCTTCCAAAT  197
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TACATACCACAGGAATAGTGTTGGATCACAAGGGAACTGGTCTTCCAAAT  193

seq1  ATCCCAGGGAGACAAGGTGCGCTGCAAACCCACGTTACCCTTCTGGATAC  247
      |||||||||||||||||||||||||||||||||| || ||||||||||| 
seq2  ATCCCAGGGAGACAAGGTGCGCTGCAAACCCACG-TAACCTTCTGGATA-  241

seq1  CTGTCCAGTCACTGCTCACGCGGATCCTGACACCAGGCTACATATCTGCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCAGTCACTGCTCACGCGGATCCTGACACCAGGCTACATATCTGCT  291

seq1  GCGAAAGCCTTCGTTTTGTTCATTTAGAAGTCC-GGACACACGCCTTGGC  346
      |||||||| |||||||||||||||||||||||| ||||||||||||||||
seq2  GCGAAAGCTTTCGTTTTGTTCATTTAGAAGTCCGGGACACACGCCTTGGC  341

seq1  GAGAGTGTTTACATGGTGTCCTAGTCTAACAAGCGTGGGATAAGCTCTGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTGTTTACATGGTGTCCTAGTCTAACAAGCGTGGGATAAGCTCTGA  391

seq1  TGTCAGAAGCACATTTCACAGAGAACAGGCTTGCCTTTTTATCCCAGAGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGAAGCACATTTCACAGAGAACAGGCTTGCCTTTTTATCCCAGAGT  441

seq1  ATTAGGGTTGAGAGCCCAGCAGGATTCATCTACCCTACAAAAGCATCCCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGGTTGAGAGCCCAGCAGGATTCATCTACCCTACAAAAGCATCCCC  491

seq1  ATGCTGCCGACTGTGTGTGCCTAGCAGGGACACCCACAAGTTGTGTTCTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGCCGACTGTGTGTGCCTAGCAGGGACACCCACAAGTTGTGTTCTC  541

seq1  TCACCGAGTGACATTTTCTAGCTGTTCACTTTATATTTGTCACATGTATG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCGAGTGACATTTTCTAGCTGTTCACTTTATATTTGTCACATGTATG  591

seq1  CAAAGTGTCCCATGGAACGAAAGCTGGGTCAGTTTGGGCATCACTAATCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGTCCCATGGAACGAAAGCTGGGTCAGTTTGGGCATCACTAATCT  641

seq1  CATTAGTGTGATGACTCTACAAACACACAACAACAAGAGAAAGTAACTGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGTGTGATGACTCTACAAACACACAACAACAAGAGAAAGTAACTGG  691

seq1  TAAGCCCCTGGCATGTGCACACCATGCTCAGCAGGCACATCATTGAAACA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCCCTGGCATGTGCACACCATGCTCAGCAGGCACATCATTGAAACA  741

seq1  CGCACTTCACCAGTTTCGAAGAAAGGCAGCAGGCAGCAGCTCCCGTCTGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACTTCACCAGTTTCGAAGAAAGGCAGCAGGCAGCAGCTCCCGTCTGA  791

seq1  CTCCTCACTCCCTGCTGCACACGGAAGGAGGTCTGACAGGCCCCACTACC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCACTCCCTGCTGCACACGGAAGGAGGTCTGACAGGCCCCACTACC  841

seq1  CTAAAGAGCCATGAGTGCGAGGTGAAGCGCATCTTACCTGTGCCTTTCAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGAGCCATGAGTGCGAGGTGAAGCGCATCTTACCTGTGCCTTTCAA  891

seq1  ATCCAGGAGCATCTTTCTTCTTTGAGATGGGAGAGAGGAAGTTTTGTCTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGGAGCATCTTTCTTCTTTGAGATGGGAGAGAGGAAGTTTTGTCTG  941

seq1  TCCATTGCAAGTTTTTTTAATGCCCTGCATTCCCTTTAATACTTAGAATA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGCAAGTTTTTTTAATGCCCTGCATTCCCTTTAATACTTAGAATA  991

seq1  TGACTTCTCATACTTCCAGTGGAAGTCTTTAGAGACCCAGTGGCATTGTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTCTCATACTTCCAGTGGAAGTCTTTAGAGACCCAGTGGCATTGTT  1041

seq1  GCCATTATGAGGCATGTGGCACACTAATCATAACAGTTACTATTTGATTA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTATGAGGCATGTGGCACACTAATCATAACAGTTACTATTTGATTA  1091

seq1  GCAGTTTGACATGGACACTGTTGTTGTTTTAGTTCATGATGAAGTGGTCA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTTGACATGGACACTGTTGTTGTTTTAGTTCATGATGAAGTGGTCA  1141

seq1  GAGTGGCGGGTGAATTC  1163
      |||||||||||||||||
seq2  GAGTGGCGGGTGAATTC  1158

seq1: chr3_149041004_149042120
seq2: B6Ng01-079H10.g_69_1159

seq1  GAATTCACCACAACCAGAAGGAGCTTATCCGCTGGAAAGAAAGCATGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCACAACCAGAAGGAGCTTATCCGCTGGAAAGAAAGCATGTTG  50

seq1  TCTATTCACAGAGAAGAGCAAGCTGGAGTACTGGAAGGAAATAATAAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTCACAGAGAAGAGCAAGCTGGAGTACTGGAAGGAAATAATAAGTT  100

seq1  CATATCTAAAGGGGCTAGAAGAGATATTAAAGCTTTCTATAGTCGTCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCTAAAGGGGCTAGAAGAGATATTAAAGCTTTCTATAGTCGTCATT  150

seq1  CATGACCTAAAGTGAACAGAGGAACAATCCCTGACTGTGTCTTTAAGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACCTAAAGTGAACAGAGGAACAATCCCTGACTGTGTCTTTAAGCCA  200

seq1  ACAATCAGGAGTGTGCATGCATGTGTACACAGGTGTGCATACATGTGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCAGGAGTGTGCATGCATGTGTACACAGGTGTGCATACATGTGAGT  250

seq1  GTGGGCATACAGTTGTGGCACAGTGCACACGCGGAGCATGAAGACAATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCATACAGTTGTGGCACAGTGCACACGCGGAGCATGAAGACAATTG  300

seq1  TTGGCTTTCACTCATCACCGTCTACCTTATTTGAGAGTTGGTTTCCTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTTCACTCATCACCGTCTACCTTATTTGAGAGTTGGTTTCCTTGT  350

seq1  TGGCTGCTGCATATGCTGGGCTAGCTGCCCTGTGTGAATCCAGAGTTCCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGCTGCATATGCTGGGCTAGCTGCCCTGTGTGAATCCAGAGTTCCG  400

seq1  GAGACTCTCCTCACTCTGACTTACAACTTTTCATGGAGCATTGGAGTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTCTCCTCACTCTGACTTACAACTTTTCATGGAGCATTGGAGTTAG  450

seq1  ATATGTGGGGCGTCCAAACTCAGGTCTTTCACACTTCTATGGTGAGAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGGGGCGTCCAAACTCAGGTCTTTCACACTTCTATGGTGAGAAGA  500

seq1  TGGCTCTCATAGCCCTCCTTCTAGTCCCCCCCACAGTGAGCTTGTTCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTCATAGCCCTCCTTCTAGTCCCCCCCACAGTGAGCTTGTTCTGG  550

seq1  TTGGTGAAAACCTGTAATGAAATACAGATCCCCACTACGGTCGTTAATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGAAAACCTGTAATGAAATACAGATCCCCACTACGGTCGTTAATTT  600

seq1  TAACTTATTGGAAGGTTTCAGATGGACCAGTGATGTGAAACCAAACATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTATTGGAAGGTTTCAGATGGACCAGTGATGTGAAACCAAACATGA  650

seq1  TAAATACATATTAGGCAGAGTGTTACGTGAAATAAAAAATTATTGATGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACATATTAGGCAGAGTGTTACGTGAAATAAAAAATTATTGATGTG  700

seq1  TCCTAAAATATAATTACATTTAATTTTAAGCTAAAAATAGAATTAAAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAAATATAATTACATTTAATTTTAAGCTAAAAATAGAATTAAAAGA  750

seq1  ATAAGTCCCATTCATGATATCAATAAAATATTAGTAACTCAGGGATAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTCCCATTCATGATATCAATAAAATATTAGTAACTCAGGGATAAAT  800

seq1  TTAGAAACAAACTTCTGAAGGAGATATAAAGAAAATTACAAATGCTGATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAACAAACTTCTGAAGGAGATATAAAGAAAATTACAAATGCTGATG  850

seq1  CAGTCTTTATGTAACACATAAAGAATTAAAAAAGAAAACTTTCCAGAGAT  900
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CAGTCTTTATGTAACACATAAAGAATT-AAAAAGAAAACTTTCCAGAGAT  899

seq1  CTATAACTTACAGCAAAGTATTTGTACGAGACAAGTGGAATTAATTTATA  950
      |||||||||||||||||||||||||||||||| |||||||||| ||||||
seq2  CTATAACTTACAGCAAAGTATTTGTACGAGAC-AGTGGAATTATTTTATA  948

seq1  TTTCATGCATTCCCCACATGCATTTCCACGTTGTTAAAATAAAATAGGAG  1000
      ||||||||||||||||||||||||| |||| |||||||   |||||||||
seq2  TTTCATGCATTCCCCACATGCATTT-CACG-TGTTAAA--TAAATAGGAG  994

seq1  TTTTGAGGGAAATTTAAAACTCTTTTTCCTCTTAACATTTACTTAGGAAG  1050
       ||||| |||||||| ||||||||||||||||  |||||||||     ||
seq2  -TTTGA-GGAAATTT-AAACTCTTTTTCCTCT--ACATTTACT-----AG  1034

seq1  AATAAGCAAGCAAGACTTTAAGGGTAAATTTGAAGCAAACATTGTCATCA  1100
      |   ||| ||| ||||||||  ||| |||||| |||||   |||||||||
seq2  AGATAGC-AGC-AGACTTTA--GGT-AATTTG-AGCAA--CTTGTCATCA  1076

seq1  TTACCAAGAAACACACT  1117
      ||| |||||||| ||||
seq2  TTA-CAAGAAAC-CACT  1091