BAC Information

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BAC

Clone NameB6Ng01-079H15
Chromosome3 (Build37)
Map Location 135,262,907 - 135,449,175
singlet/doubletdoublet
Overlap geneNfkb1, ENSMUSG00000045520
Upstream geneLOC100039234, Tacr3, LOC229837, LOC100039290, EG620439, Cenpe, Bdh2, C80638, 4933425K02Rik, Zcd2, Ube2d3, Manba, LOC668745
Downstream geneSlc39a8, LOC100039350, LOC383923, Bank1, LOC100039477, LOC668868, Ppp3ca
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079H15.bB6Ng01-079H15.g
ACCDH894876DH894877
length1,0901,172
definitionDH894876|Mus musculus domesticus DNA, BAC clone: B6Ng01-079H15, 5' end.DH894877|Mus musculus domesticus DNA, BAC clone: B6Ng01-079H15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,262,907 - 135,264,006)(135,447,993 - 135,449,175)
sequence
gaattccactagttctcatctcatctcttctaaataacaaattattcacg
gttgctggccacagtttttcaatgaaagcaatatgacctggaagcagagg
tctcagcatgggcctggctgtggggatcagaatgacactctgggcaagag
agtgcagaggaacttagaagccaacaagaggataagaccaacaggcccag
agagaggggtaggggcacaaaagggttggagagaaatagaggtgagagag
gaaggagccgtagagcaggccaccatcctgggccaggccacagctcccag
actgtgtctgccagtggagtttctggtttgctttgccctaccatctgcct
ctgtcctcagctcactgtgccatctccaggtagtttcctctggagttttc
ggggctcccttaccttctcacacctgagctggatgggactctgaggtgcc
tcttcctgttcttacagcctttcacctctccaggagctgacctcagagcc
tttctttgacatacacttgatccagttgctgtgcgaatacccttccttcc
gcagacctcaaaattcttttttttttttaatttgaaaatattcttttttt
ccaattttttattaggtattttcttcatttgcatttcaaatgctatcccg
aaagtcccctataccctcctcccgccctgctcccctacctacccactcct
gcttcttggccctggcgttcccctgtactggggcatataaagtttgtaag
accaaggggcctctctttccagtgatggtcgactatgccattttctgcta
catatgcagctagagacatgagctctgggggtattggttagttcatattg
ttgttccacctatagggttgcagaccccttcagctccttgggtgttttct
ctagctcctccatttggagccctgtgatccatccatagctgactgtgagc
atccacttgtgtgtttgctaggcccagcatagcctcacaagaaaacagct
atatcaggtctttccgcaaatcttgcagcatatgcaatagtgtctgcatt
gtggctgatatgggatggatcccgctgggacagtctctgg
gaattctttgattctttgaagtttatgattgtccttttttaaaatttatg
tccgaagggtgtttcctagacaattcacttcagcaagcatttctacaaga
ctgttgagatttggagatgaaatactgacctgatcatttataaagtttgt
atttttgcaaagatatctagatacatggatctcttttgttaattctacat
ttaatatagatagaataggctgaagcagaacagatgaagtatggatgggt
taaacctagagggtagaaatatcttgtgtgaaatgaagtcaggtggatac
agggtattaggctggtgtgcaagatgtgtgtcctggaccaagccaggagt
ttagaggtcaatttgggactggggagaggagatagagggcagggagggtc
aggcagattcaccaggttaaaccctggagaaagatgcgcaggatctagct
gtgcagaaaggttggatatcaatgttagtttttaagaaaaggactaagat
tagttttatttccttgacacataatattctagacaatagaagacgggagg
agtgacgagggacactttcatctgtgtgttattacattttgtattataaa
gaagacatgcttgtactccacatcataaggggatgagcaccaatatacca
ttgctagctgcacatggacaccgtgctaatgatcagctgcacacaccgtg
ctcatggttgatcgttctgtgttgaccccactccctgcctcaatgttcct
gatgagtacaggttgacaccagcagaaaccaacttgactcagtgtttcgg
agagttcctgggcccaaacacccgataataagggaagagtgcaagggatg
ataccaagaggctgcaggcatgtcagatactgaaaaagtggcagaccacg
tgactgatggtggtcagggcaggattgagcttcagcgtgattgacagcct
tccctctcccatatcatgtgctcgttctaaaagacacaagatggcgtcta
ggatactcatctactgtcttctcagtagctctagcgtcagttggagtgac
aaggtaacatggcttgaattcagtttcaagaaacacccctcaaagactgt
tcccggatctgtggtattcgagacagaaatgttctcaaatctatcagaga
aattatccactttcctctgtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_135262907_135264006
seq2: B6Ng01-079H15.b_42_1131

seq1  GAATTCCACTAGTTCTCATCTCATCTCTTCTAAATAACAAATTATTCACG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTAGTTCTCATCTCATCTCTTCTAAATAACAAATTATTCACG  50

seq1  GTTGCTGGCCACAGTTTTTCAATGAAAGCAATATGACCTGGAAGCAGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGGCCACAGTTTTTCAATGAAAGCAATATGACCTGGAAGCAGAGG  100

seq1  TCTCAGCATGGGCCTGGCTGTGGGGATCAGAATGACACTCTGGGCAAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCATGGGCCTGGCTGTGGGGATCAGAATGACACTCTGGGCAAGAG  150

seq1  AGTGCAGAGGAACTTAGAAGCCAACAAGAGGATAAGACCAACAGGCCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAGAGGAACTTAGAAGCCAACAAGAGGATAAGACCAACAGGCCCAG  200

seq1  AGAGAGGGGTAGGGGCACAAAAGGGTTGGAGAGAAATAGAGGTGAGAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGGGTAGGGGCACAAAAGGGTTGGAGAGAAATAGAGGTGAGAGAG  250

seq1  GAAGGAGCCGTAGAGCAGGCCACCATCCTGGGCCAGGCCACAGCTCCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGCCGTAGAGCAGGCCACCATCCTGGGCCAGGCCACAGCTCCCAG  300

seq1  ACTGTGTCTGCCAGTGGAGTTTCTGGTTTGCTTTGCCCTACCATCTGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTCTGCCAGTGGAGTTTCTGGTTTGCTTTGCCCTACCATCTGCCT  350

seq1  CTGTCCTCAGCTCACTGTGCCATCTCCAGGTAGTTTCCTCTGGAGTTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTCAGCTCACTGTGCCATCTCCAGGTAGTTTCCTCTGGAGTTTTC  400

seq1  GGGGCTCCCTTACCTTCTCACACCTGAGCTGGATGGGACTCTGAGGTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTCCCTTACCTTCTCACACCTGAGCTGGATGGGACTCTGAGGTGCC  450

seq1  TCTTCCTGTTCTTACAGCCTTTCACCTCTCCAGGAGCTGACCTCAGAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTGTTCTTACAGCCTTTCACCTCTCCAGGAGCTGACCTCAGAGCC  500

seq1  TTTCTTTGACATACACTTGATCCAGTTGCTGTGCGAATACCCTTCCTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGACATACACTTGATCCAGTTGCTGTGCGAATACCCTTCCTTCC  550

seq1  GCAGACCTCAAAATTCTTTTTTTTTTTTAATTTGAAAATATTCTTTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACCTCAAAATTCTTTTTTTTTTTTAATTTGAAAATATTCTTTTTTT  600

seq1  CCAATTTTTTATTAGGTATTTTCTTCATTTGCATTTCAAATGCTATCCCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTTTTTATTAGGTATTTTCTTCATTTGCATTTCAAATGCTATCCCG  650

seq1  AAAGTCCCCTATACCCTCCTCCCGCCCTGCTCCCCTACCTACCCACTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCCCCTATACCCTCCTCCCGCCCTGCTCCCCTACCTACCCACTCCT  700

seq1  GCTTCTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGTAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGTAAG  750

seq1  ACCAAGGGGCCTCTCTTTCCAGTGATGGTCGACTATGCCATTTTCTGCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGGGGCCTCTCTTTCCAGTGATGGTCGACTATGCCATTTTCTGCTA  800

seq1  CATATGCAGCTAGAGACATGAGCTCTGGGGGTATTGGTTAGTTCATATTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGCAGCTAGAGACATGAGCTCTGGGGGTATTGGTTAGTTCATATTG  850

seq1  TTGTTCCACCTATAGGGTTGCAGACCCCTTCAGCTCCTTGGGTGTTTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCCACCTATAGGGTTGCAGACCCCTTCAGCTCCTTGGGTGTTTTCT  900

seq1  CTAGCTCCTCCATTTGGAGCCCTGTGATCCATCCAATAGCTGACTGTGAG  950
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTAGCTCCTCCATTTGGAGCCCTGTGATCCATCC-ATAGCTGACTGTGAG  949

seq1  CATCCACTTGTGTGTTTGCTAGGCCCCAGCATAGCCTCACAAG-AAACAG  999
      ||||||||||||||||||||||| ||||||||||||||||||| ||||||
seq2  CATCCACTTGTGTGTTTGCTAGG-CCCAGCATAGCCTCACAAGAAAACAG  998

seq1  CTATATCAGGGTCCTTTCCGCAAAATCTTGCAGGCATATGCAATAGTGTC  1049
      ||||||||||   |||||||| |||||||||| |||||||||||||||||
seq2  CTATATCAGG--TCTTTCCGC-AAATCTTGCA-GCATATGCAATAGTGTC  1044

seq1  TGCGTTTTGTGGCTGATTATGGGATGGATCCCCGGCTGGGACAGTCTCTG  1099
      |||   |||||||||| |||||||||||||||  ||||||||||||||||
seq2  TGC--ATTGTGGCTGA-TATGGGATGGATCCC--GCTGGGACAGTCTCTG  1089

seq1  G  1100
      |
seq2  G  1090

seq1: chr3_135447993_135449175
seq2: B6Ng01-079H15.g_69_1240 (reverse)

seq1  TGACAGAGAGAAAGTGGATAATATTCTCTTGAATGATTTTGAGAAACATT  50
      |||||||| ||||||||||||| ||||| |||  || |||||| ||||||
seq2  TGACAGAG-GAAAGTGGATAAT-TTCTC-TGATAGA-TTTGAG-AACATT  45

seq1  TCTGTCTCTGAAATCACAAGATCTGGGAAACAGTCTTTTGATGGTGTTTC  100
      ||||||||  | | ||| ||||| ||| ||||||||||    ||||||||
seq2  TCTGTCTCGAATACCAC-AGATCCGGG-AACAGTCTTTGAGGGGTGTTTC  93

seq1  -TGAAACTGGAATTCAAGGCCATGTTACC-TGTCACT-CAACTGACGGCT  147
       ||||||| |||||||| ||||||||||| ||||||| |||||||| |||
seq2  TTGAAACT-GAATTCAA-GCCATGTTACCTTGTCACTCCAACTGAC-GCT  140

seq1  AGAGCTACTGAGAAGACAGTAGATGAGTATCCTAGAACGCCATCTTGTGT  197
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGAGCTACTGAGAAGACAGTAGATGAGTATCCTAG-ACGCCATCTTGTGT  189

seq1  CTTTTAGAACGAGCACATGATATGGGAGGAGGGAAGGCTGTCAATCACGC  247
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTTTTAGAACGAGCACATGATATGGGA-GAGGGAAGGCTGTCAATCACGC  238

seq1  TGGAGCTCAATCCTGCCCTTGACCACCATCAGTCACGTGGTCTGCCACTT  297
      || ||||||||||||||| ||||||||||||||||||||||||||||| |
seq2  TGAAGCTCAATCCTGCCC-TGACCACCATCAGTCACGTGGTCTGCCAC-T  286

seq1  TTTTCAGTATCTGACATGCCTGCAGCCTCTTGGTATCATCCCTTGCACTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGTATCTGACATGCCTGCAGCCTCTTGGTATCATCCCTTGCACTC  336

seq1  TTCCCTTATTATCGGGTGTTTGGGCCCAGGAACTCTCCGAAACACTGAGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTATTATCGGGTGTTTGGGCCCAGGAACTCTCCGAAACACTGAGT  386

seq1  CAAGTTGGTTTCTGCTGGTGTCAACCTGTACTCATCAGGAACATTGAGGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTGGTTTCTGCTGGTGTCAACCTGTACTCATCAGGAACATTGAGGC  436

seq1  AGGGAGTGGGGTCAACACAGAACGATCAACCATGAGCACGGTGTGTGCAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGTGGGGTCAACACAGAACGATCAACCATGAGCACGGTGTGTGCAG  486

seq1  CTGATCATTAGCACGGTGTCCATGTGCAGCTAGCAATGGTATATTGGTGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCATTAGCACGGTGTCCATGTGCAGCTAGCAATGGTATATTGGTGC  536

seq1  TCATCCCCTTATGATGTGGAGTACAAGCATGTCTTCTTTATAATACAAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCCCTTATGATGTGGAGTACAAGCATGTCTTCTTTATAATACAAAA  586

seq1  TGTAATAACACACAGATGAAAGTGTCCCTCGTCACTCCTCCCGTCTTCTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATAACACACAGATGAAAGTGTCCCTCGTCACTCCTCCCGTCTTCTA  636

seq1  TTGTCTAGAATATTATGTGTCAAGGAAATAAAACTAATCTTAGTCCTTTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTAGAATATTATGTGTCAAGGAAATAAAACTAATCTTAGTCCTTTT  686

seq1  CTTAAAAACTAACATTGATATCCAACCTTTCTGCACAGCTAGATCCTGCG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAACTAACATTGATATCCAACCTTTCTGCACAGCTAGATCCTGCG  736

seq1  CATCTTTCTCCAGGGTTTAACCTGGTGAATCTGCCTGACCCTCCCTGCCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTCTCCAGGGTTTAACCTGGTGAATCTGCCTGACCCTCCCTGCCC  786

seq1  TCTATCTCCTCTCCCCAGTCCCAAATTGACCTCTAAACTCCTGGCTTGGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTCCTCTCCCCAGTCCCAAATTGACCTCTAAACTCCTGGCTTGGT  836

seq1  CCAGGACACACATCTTGCACACCAGCCTAATACCCTGTATCCACCTGACT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACACACATCTTGCACACCAGCCTAATACCCTGTATCCACCTGACT  886

seq1  TCATTTCACACAAGATATTTCTACCCTCTAGGTTTAACCCATCCATACTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCACACAAGATATTTCTACCCTCTAGGTTTAACCCATCCATACTT  936

seq1  CATCTGTTCTGCTTCAGCCTATTCTATCTATATTAAATGTAGAATTAACA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTTCTGCTTCAGCCTATTCTATCTATATTAAATGTAGAATTAACA  986

seq1  AAAGAGATCCATGTATCTAGATATCTTTGCAAAAATACAAACTTTATAAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGATCCATGTATCTAGATATCTTTGCAAAAATACAAACTTTATAAA  1036

seq1  TGATCAGGTCAGTATTTCATCTCCAAATCTCAACAGTCTTGTAGAAATGC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAGGTCAGTATTTCATCTCCAAATCTCAACAGTCTTGTAGAAATGC  1086

seq1  TTGCTGAAGTGAATTGTCTAGGAAACACCCTTCGGACATAAATTTTAAAA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGAAGTGAATTGTCTAGGAAACACCCTTCGGACATAAATTTTAAAA  1136

seq1  AAGGACAATCATAAACTTCAAAGAATCAAAGAATTC  1183
      ||||||||||||||||||||||||||||||||||||
seq2  AAGGACAATCATAAACTTCAAAGAATCAAAGAATTC  1172