BAC Information

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BAC

Clone NameB6Ng01-079J03
Chromosome3 (Build37)
Map Location 24,570,474 - 24,698,149
singlet/doubletdoublet
Overlap geneEG635702
Upstream geneEG665189
Downstream geneLOC100039592, Nlgn1, LOC621017
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079J03.bB6Ng01-079J03.g
ACCDH894942DH894943
length5371,019
definitionDH894942|Mus musculus domesticus DNA, BAC clone: B6Ng01-079J03, 5' end.DH894943|Mus musculus domesticus DNA, BAC clone: B6Ng01-079J03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,570,474 - 24,571,016)(24,697,120 - 24,698,149)
sequence
atattccagaacagcattttcttcaagaaaatgttttagttaagaagagt
gttcacaaagaccaaagtgtggacattttgccctttcttagaattgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatctagagactgccacacccagaaatccatctcataatc
agcctccaaatgctgacaccattgcatacagcagcaagattttgctgaaa
ggaccctgatatagctgtctcttgtaaggatatgccagagcctagtaaac
acagaagtggatgctaacagtcagctattggatggatcacagggccccca
atggaggagctagagaaagtacccaaggagctgaaggggtctgcaacctt
ataggtgggacaataatatgaactaaccagtacccccagagctcctgtct
ctagctgcatatgtagcagaacatggcctagtcggccatcattggaaaga
gaggcccatgtgtcttgcaaactttatatgccttagt
gaattccaatcttctgtagagaatgaagttgatggagaaactctgacacg
ggagctctgatttggatgtaagaaacagttaatactatttttatacctac
tagcatagcattagtattgaaatctgtagatcaagaagcttggtttatac
tagtcttattaagaaatatactaggggctcgagggatatggatcagttaa
tagagtgcttgctttatgagtataaatttgttatactcataaatacccat
gtaaatatcagacatggtggctaatatctataaccccagggctataggat
tagaaacaggaagattcctgggccttactattcactagagctgaattcat
gagctcctcattcaaatgagaagcaatatctcaaaaagatagggtggaga
catattgagggagacatctattgtcagtctctattttccatttgaaccgg
tgaacaatttcactcttactgacatggtcatgtaaatgcttttgaacaca
tttagacaaatatcacatgtatgtacacatactcacacgcacacatcatg
gaaaagaattatatcaggtatagtagtgcatgtgtgtaatcttaatgctt
cagagagagagagagagagagagagagagagagagagagggagagagaga
gagagagcagaggatcaggagttcaaagggtcagcctcagctatatcttg
agttcatggaggtagagagataaagagatgaagaatgagagacaagagag
agaatgcacccgtgtatccaacatgtctcaccactgcaccatgacaaatg
aaaaaagaaccaaaaagtgaaataggtaattttctgttaaatagtattgt
gcacattcatgattgtttagaatctatatcactgtttcatgagatttaag
acttcaaggatatgaaagaagagctgagctgagggagaaacaaaagatct
cattagactgggctaaccagtacccggagctctgactctagctgcatatg
tatcaaaggtggctagtcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_24570474_24571016
seq2: B6Ng01-079J03.b_46_588

seq1  GAATTCATATTCCAGAACAGCATTTTCTTCAAGAAAATGTTTTAGTTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATTCCAGAACAGCATTTTCTTCAAGAAAATGTTTTAGTTAAG  50

seq1  AAGAGTGTTCACAAAGACCAAAGTGTGGACATTTTGCCCTTTCTTAGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTGTTCACAAAGACCAAAGTGTGGACATTTTGCCCTTTCTTAGAAT  100

seq1  TGGGAACAAAACACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAACAAAACACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTG  150

seq1  AGATGAAAGGATGGACCATCTAGAGACTGCCACACCCAGAAATCCATCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAAGGATGGACCATCTAGAGACTGCCACACCCAGAAATCCATCTC  200

seq1  ATAATCAGCCTCCAAATGCTGACACCATTGCATACAGCAGCAAGATTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCAGCCTCCAAATGCTGACACCATTGCATACAGCAGCAAGATTTTG  250

seq1  CTGAAAGGACCCTGATATAGCTGTCTCTTGTAAGGATATGCCAGAGCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGGACCCTGATATAGCTGTCTCTTGTAAGGATATGCCAGAGCCTA  300

seq1  GTAAACACAGAAGTGGATGCTAACAGTCAGCTATTGGATGGATCACAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACACAGAAGTGGATGCTAACAGTCAGCTATTGGATGGATCACAGGG  350

seq1  CCCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTGAAGGGGTCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTGAAGGGGTCTGC  400

seq1  AACCTTATAGGTGGGACAATAATATGAACTAACCAGTACCCCCAGAGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTATAGGTGGGACAATAATATGAACTAACCAGTACCCCCAGAGCTC  450

seq1  CTGTCTCTAGCTGCATATGTAGCAGAACATGGCCTAGTCGGCCATCATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTAGCTGCATATGTAGCAGAACATGGCCTAGTCGGCCATCATTG  500

seq1  GAAAGAGAGGCCCATGTGTCTTGCAAACTTTATATGCCTTAGT  543
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGAGGCCCATGTGTCTTGCAAACTTTATATGCCTTAGT  543

seq1: chr3_24697120_24698149
seq2: B6Ng01-079J03.g_68_1086 (reverse)

seq1  CGACTAGGCCACCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCGGG  50
      |||||| |||||| |||||||||||||||||||||||| |||||||| ||
seq2  CGACTA-GCCACC-TTTGATACATATGCAGCTAGAGTC-AGAGCTCC-GG  46

seq1  GTACTGGTTAGCCCAGTTCTAATGAAGATTCTTTTGTTTCTCCCTCAGCC  100
      |||||||||||||||| ||||||| ||| ||||||||||||||||||| |
seq2  GTACTGGTTAGCCCAG-TCTAATG-AGA-TCTTTTGTTTCTCCCTCAG-C  92

seq1  TCAGCTTCTTCTTTCATTATCCTTGAAGTCTTAAATCTCATG-AACAGTG  149
      ||||| |||||||||| ||||||||||||||||||||||||| |||||||
seq2  TCAGC-TCTTCTTTCA-TATCCTTGAAGTCTTAAATCTCATGAAACAGTG  140

seq1  ATATAGATTTCTAAAACAATCATGAATGTGCACAATACTATTTAACAGAA  199
      ||||||| |||| |||||||||||||||||||||||||||||||||||||
seq2  ATATAGA-TTCT-AAACAATCATGAATGTGCACAATACTATTTAACAGAA  188

seq1  AATTACCTATTTCACTTTTTGGTTCTTTTTTCATTTGTCATGGTGCAGTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACCTATTTCACTTTTTGGTTCTTTTTTCATTTGTCATGGTGCAGTG  238

seq1  GTGAGACATGTTGGATACACGGGTGCATTCTCTCTCTTGTCTCTCATTCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGACATGTTGGATACACGGGTGCATTCTCTCTCTTGTCTCTCATTCT  288

seq1  TCATCTCTTTATCTCTCTACCTCCATGAACTCAAGATATAGCTGAGGCTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCTTTATCTCTCTACCTCCATGAACTCAAGATATAGCTGAGGCTG  338

seq1  ACCCTTTGAACTCCTGATCCTCTGCTCTCTCTCTCTCTCTCCCTCTCTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTTGAACTCCTGATCCTCTGCTCTCTCTCTCTCTCTCCCTCTCTCT  388

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGAAGCATTAAGATTACACAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGAAGCATTAAGATTACACAC  438

seq1  ATGCACTACTATACCTGATATAATTCTTTTCCATGATGTGTGCGTGTGAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACTACTATACCTGATATAATTCTTTTCCATGATGTGTGCGTGTGAG  488

seq1  TATGTGTACATACATGTGATATTTGTCTAAATGTGTTCAAAAGCATTTAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTACATACATGTGATATTTGTCTAAATGTGTTCAAAAGCATTTAC  538

seq1  ATGACCATGTCAGTAAGAGTGAAATTGTTCACCGGTTCAAATGGAAAATA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCATGTCAGTAAGAGTGAAATTGTTCACCGGTTCAAATGGAAAATA  588

seq1  GAGACTGACAATAGATGTCTCCCTCAATATGTCTCCACCCTATCTTTTTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTGACAATAGATGTCTCCCTCAATATGTCTCCACCCTATCTTTTTG  638

seq1  AGATATTGCTTCTCATTTGAATGAGGAGCTCATGAATTCAGCTCTAGTGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTGCTTCTCATTTGAATGAGGAGCTCATGAATTCAGCTCTAGTGA  688

seq1  ATAGTAAGGCCCAGGAATCTTCCTGTTTCTAATCCTATAGCCCTGGGGTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAAGGCCCAGGAATCTTCCTGTTTCTAATCCTATAGCCCTGGGGTT  738

seq1  ATAGATATTAGCCACCATGTCTGATATTTACATGGGTATTTATGAGTATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATATTAGCCACCATGTCTGATATTTACATGGGTATTTATGAGTATA  788

seq1  ACAAATTTATACTCATAAAGCAAGCACTCTATTAACTGATCCATATCCCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTTATACTCATAAAGCAAGCACTCTATTAACTGATCCATATCCCT  838

seq1  CGAGCCCCTAGTATATTTCTTAATAAGACTAGTATAAACCAAGCTTCTTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCCCCTAGTATATTTCTTAATAAGACTAGTATAAACCAAGCTTCTTG  888

seq1  ATCTACAGATTTCAATACTAATGCTATGCTAGTAGGTATAAAAATAGTAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACAGATTTCAATACTAATGCTATGCTAGTAGGTATAAAAATAGTAT  938

seq1  TAACTGTTTCTTACATCCAAATCAGAGCTCCCGTGTCAGAGTTTCTCCAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGTTTCTTACATCCAAATCAGAGCTCCCGTGTCAGAGTTTCTCCAT  988

seq1  CAACTTCATTCTCTACAGAAGATTGGAATTC  1030
      |||||||||||||||||||||||||||||||
seq2  CAACTTCATTCTCTACAGAAGATTGGAATTC  1019