BAC Information

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BAC

Clone NameB6Ng01-079J08
Chromosome3 (Build37)
Map Location 143,326,467 - 143,479,862
singlet/doubletdoublet
Overlap geneEG621809
Upstream geneEG621605, Ccbl2, Gtf2b, Pkn2, LOC100040053, LOC100039883, 1700001N15Rik, EG668889
Downstream geneLOC100039938, LOC100039952, Lmo4, LOC545572, Hs2st1, Sep15, LOC435761, Sh3glb1, LOC668890, Clca1, Clca2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079J08.bB6Ng01-079J08.g
ACCDH894950DH894951
length1,1861,160
definitionDH894950|Mus musculus domesticus DNA, BAC clone: B6Ng01-079J08, 5' end.DH894951|Mus musculus domesticus DNA, BAC clone: B6Ng01-079J08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,478,660 - 143,479,862)(143,326,467 - 143,327,638)
sequence
gaattcctacgtgtgagaaccagtcgttctttgatgcttgggccttcttt
tgggctcttttccatcagtcgattgacgtaatccaacttcgatgcaatat
ttttttgttttgttttagcttgttgtgttttgttattattcattagaagt
ccatttgtttttttctttaataagggacagaaggggagtggatctgcatg
tgagaggagatagacagcaactggaaggagtagaggggagaatctggata
tattgtatgagaaactaatttattttcaataaaaggagagagagaaggag
tgggggagggcagaactcagaggcaagaaaagtgtttcacctaacataag
ggatgtcttcaaggacaattggtatttagttttgatttctggtggaagga
tgaggttttactagacagaatcagtggaggtaaaaacacagtattaatgg
gggtgttttctcataatttttcacagtccatgccagttttaactgtgaag
tcgtgggggacagatgaagcctaaaaagaccgattaagtccagattgtag
aggaacaaaatcaaacaagcaagcaaacaaacaaacaaaactccttctag
gtacctagagcacacacagtaggttatgcagagcttgccacatgacatgc
atggtagaaaccagatgcttgaatgaagatggacttggtaccaaataaaa
agtataagtgggctggtatgtagcttactggtagagaacttgtctggttt
acacagttctcaaggtttaatttctagaaacgcaaactcatgaatgtata
catccttgagtcagaaacatgatcgtgatgattggaacctgtgatgctag
tgaggcgtgacacctgggggctggtctatgtgggcctgaggatagaaaga
ttgttcgctggctgagctggactccagaataatctgagattctggacttc
caactaccactctatcgcacctccatgggtgactttccaatcagttcaat
ggacccacgtattgagttaccacccatcttggctgactgatacccccaca
cccatggtccccagttttctttgctgactacccttttctaggcaccctga
tttctggacaggatagtacatccacaacagccctgcgcttcccacattct
tccctccgatttgtgatcgtgcgagggttaaaaaaa
gaattctctgatgggaactctaataaatgtaatagcatgctgtaataaag
agcactagaaaatggatgaggtctaacaaaattattcataaagagaaatg
gaaagggatgccatgctgagcggtcccatgcagttatatagacactaaca
aggttatccctggaagctgagtgctagtacattcacatatgttttctaac
tagcacaaagagagactgtttttatctcgaagaacaggagagcctggagt
tagaggtgtgctaaatcttgctcctgatttttaataattcagagccaaat
agcaataatggctcacgtagggtcggtttaatgaacaaagcaacctcact
tcaggttgttcgatgctaaggctctctgccgagttgctaactggtgtact
ttacagctatctccagggttctttttgatatgatattatcctcctcacac
actgtgttttctatacaccaaaatataatgtgaaaccatgagcgaggatg
gaaaaccctgaaagaatgttcaaatgagcctgtgagttcctgctttggag
gtacagcgatgtcagaaaaacaggcagacgccctgcttacgcactcctca
gagtccttaggactcactctcattcacggagcttggtacggagctgggag
catctttggagctaacgagagaaattcacccataacatttctattatctc
ccgctgatcatcaacccttggcctgcgaaacacacatagcctgacttgca
accaattcaatgactgcattggtgagttgttatgtctctgacataccagg
tcctctatttctgtaaatttactttcttatgataaatttaaaggatgctt
ttatgacaccaatgagtttaaacctcagcccatggaaaggaactttatgg
tggaggatttgaactttttctgttgtgttatactcaattttaagtaagac
atggctatgagacgagtgaccaaatctaagccatcaaagtcattcaaagt
cattgacaagaaggattttgctctagactcattgttaatattcaactcat
aagtcaggttcttcatgacagaggctagcatgtcacaggcagggggatct
tttgtcgaagtctcagcttgaccgggcaagcttctgcctgactgagctca
tggtactgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_143478660_143479862
seq2: B6Ng01-079J08.b_45_1230 (reverse)

seq1  TTTTTTTAACCCTC-CACAAATCAAAATTCCTGGAGGAAAAAAATTGGGA  49
      |||||||||||||| |||  |||| || ||  ||||| || ||  |||||
seq2  TTTTTTTAACCCTCGCAC-GATCACAAATC--GGAGGGAAGAATGTGGGA  47

seq1  A-CTCAAGGCTCTTTGTGGTTGTCCTTCTCTTTTCCGAACATCAAGCTGC  98
      | | || ||||  |||||| ||| | | || | |||  | |||| | |||
seq2  AGCGCAGGGCT-GTTGTGGATGTAC-TATCCTGTCCAGAAATCAGGGTGC  95

seq1  ATAGTAAAGGTAAGT-AACGAAAATAACTTGGTGACATTGTTTCTGTGTT  147
       ||| |||||  ||| | | || | |||| ||   ||| | |   | | |
seq2  CTAGAAAAGGGTAGTCAGCAAAGAAAACTGGGGACCATGGGTGTGGGGGT  145

seq1  ATCAGTCAGCTAAAGAGTGGTAGAAACTCAAAATGTGTGTCCATTTTAGT  197
      ||||||||||  ||||  ||| | ||||||| | ||| ||||| || |  
seq2  ATCAGTCAGC-CAAGATGGGTGGTAACTCAATACGTGGGTCCA-TTGAAC  193

seq1  TGATTGAAAAGTCACCCATAGAAGCTACGATTAGATGTGGGTAGTTGGTA  247
      |||||| |||||||||||| | || | ||| |||| || ||||||||| |
seq2  TGATTGGAAAGTCACCCAT-GGAGGTGCGA-TAGA-GT-GGTAGTTGGAA  239

seq1  GTCCAGAATTTTCAGATGACTTTGGAGTCCAGCATCAGCCATGCCAACAT  297
      |||||||| | |||||| | | ||||||||||| ||||||| || |||| 
seq2  GTCCAGAA-TCTCAGATTATTCTGGAGTCCAGC-TCAGCCA-GCGAACAA  286

seq1  CTTTTCTATTCCTCAGGCCCACATAGAACCAGCCCCCAAGTGGTCACCCC  347
        |||||| ||||||||||||||||| ||||||||||| || ||||| ||
seq2  TCTTTCTA-TCCTCAGGCCCACATAG-ACCAGCCCCCAGGT-GTCACGCC  333

seq1  TCACTTGGCATCACAGGTTTCCAATCTATCACGATCATGTTTCTGACTCC  397
      |||| | |||||||||| |||||||| |||||||||||||||||||||| 
seq2  TCAC-TAGCATCACAGG-TTCCAATC-ATCACGATCATGTTTCTGACTCA  380

seq1  AGGATGTATACATTCATGGGTTTGCGTTTCTAGAAATTAAACCTTGAGAA  447
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGGATGTATACATTCATGAGTTTGCGTTTCTAGAAATTAAACCTTGAGAA  430

seq1  CTGTGTAAACCAGACAAGTTCTCTACCAGTAAGCTACATACCAGCCCAAT  497
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTGTGTAAACCAGACAAGTTCTCTACCAGTAAGCTACATACCAGCCCACT  480

seq1  TATACTTTTTATTTGGTACCAAGTCCATCTTCATTCAAGCATCTGGTTTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTTTTTATTTGGTACCAAGTCCATCTTCATTCAAGCATCTGGTTTC  530

seq1  TACCATCCATGTCATGTGGCAAGCTCTGCATAACCTACTGTGTCTGCTCT  597
      |||||| |||||||||||||||||||||||||||||||||||| ||||||
seq2  TACCATGCATGTCATGTGGCAAGCTCTGCATAACCTACTGTGTGTGCTCT  580

seq1  AGGTACCTAGAAGGAGTTTTGTTTGTTTGTTTGCTTGCTTGTTTGATTTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACCTAGAAGGAGTTTTGTTTGTTTGTTTGCTTGCTTGTTTGATTTT  630

seq1  GTTCCTCTACAATCTGGACTTAATCGGTCTTTTTAGGCTTCATCTGTCCC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTCTACAATCTGGACTTAATCGGTCTTTTTAGGCTTCATCTGTCCC  680

seq1  CCACGACTTCACAGTTAAAACTGGCATGGACTCTGAAAAATTATGAGAAA  747
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CCACGACTTCACAGTTAAAACTGGCATGGACTGTGAAAAATTATGAGAAA  730

seq1  ACACCCCCATTAATACTGTGTTTTTACCTCCACTGATTCTGTCTAGTAAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCCCATTAATACTGTGTTTTTACCTCCACTGATTCTGTCTAGTAAA  780

seq1  ACCTCATCCTTCCACCAGAAATCAAAACTAAATACCAATTGTCCTTGAAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCATCCTTCCACCAGAAATCAAAACTAAATACCAATTGTCCTTGAAG  830

seq1  ACATCCCTTATGTTAGGTGAAACACTTTTCTTGCCTCTGAGTTCTGCCCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCCTTATGTTAGGTGAAACACTTTTCTTGCCTCTGAGTTCTGCCCT  880

seq1  CCCCCACTCCTTCTCTCTCTCCTTTTATTGAAAATAAATTAGTTTCTCAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACTCCTTCTCTCTCTCCTTTTATTGAAAATAAATTAGTTTCTCAT  930

seq1  ACAATATATCCAGATTCTCCCCTCTACTCCTTCCAGTTGCTGTCTATCTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATATCCAGATTCTCCCCTCTACTCCTTCCAGTTGCTGTCTATCTC  980

seq1  CTCTCACATGCAGATCCACTCCCCTTCTGTCCCTTATTAAAGAAAAAAAC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCACATGCAGATCCACTCCCCTTCTGTCCCTTATTAAAGAAAAAAAC  1030

seq1  AAATGGACTTCTAATGAATAATAACAAAACACAACAAGCTAAAACAAAAC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGACTTCTAATGAATAATAACAAAACACAACAAGCTAAAACAAAAC  1080

seq1  AAAAAAATATTGCATCGAAGTTGGATTACGTCAATCGACTGATGGAAAAG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATATTGCATCGAAGTTGGATTACGTCAATCGACTGATGGAAAAG  1130

seq1  AGCCCAAAAGAAGGCCCAAGCATCAAAGAACGACTGGTTCTCACACGTAG  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAAAAGAAGGCCCAAGCATCAAAGAACGACTGGTTCTCACACGTAG  1180

seq1  GAATTC  1203
      ||||||
seq2  GAATTC  1186

seq1: chr3_143326467_143327638
seq2: B6Ng01-079J08.g_67_1226

seq1  GAATTCTCTGATGGGAACTCTAATAAATGTAGTAGCATGCTGTAATAAAG  50
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GAATTCTCTGATGGGAACTCTAATAAATGTAATAGCATGCTGTAATAAAG  50

seq1  AGCACTAGAAAATGGATGAGGTCTAACAAAATTATTCATAAAGAGAAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTAGAAAATGGATGAGGTCTAACAAAATTATTCATAAAGAGAAATG  100

seq1  GAAAGGGATGCCATGCTGAGCGGTCCCATGCAGTTATATAGACACTAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGATGCCATGCTGAGCGGTCCCATGCAGTTATATAGACACTAACA  150

seq1  AGGTTATCCCTGGAAGCTGAGTGCTAGTACATTCACATATGTTTTCTAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTATCCCTGGAAGCTGAGTGCTAGTACATTCACATATGTTTTCTAAC  200

seq1  TAGCACAAAGAGAGACTGTTTTTATCTCGAAGAACAGGAGAGCCTGGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACAAAGAGAGACTGTTTTTATCTCGAAGAACAGGAGAGCCTGGAGT  250

seq1  TAGAGGTGTGCTAAATCTTGCTCCTGATTTTTAATAATTCAGAGCCAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGTGTGCTAAATCTTGCTCCTGATTTTTAATAATTCAGAGCCAAAT  300

seq1  AGCAATAATGGCTCACGTAGGGTCGGTTTAATGAACAAAGCAACCTCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATAATGGCTCACGTAGGGTCGGTTTAATGAACAAAGCAACCTCACT  350

seq1  TCAGGTTGTTCGATGCTAAGGCTCTCTGCCGAGTTGCTAACTGGTGTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTTGTTCGATGCTAAGGCTCTCTGCCGAGTTGCTAACTGGTGTACT  400

seq1  TTACAGCTATCTCCAGGGTTCTTTTTGATATGATATTATCCTCCTCACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGCTATCTCCAGGGTTCTTTTTGATATGATATTATCCTCCTCACAC  450

seq1  ACTGTGTTTTCTATACACCAAAATATAATGTGAAACCATGAGCGAGGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTTTTCTATACACCAAAATATAATGTGAAACCATGAGCGAGGATG  500

seq1  GAAAACCCTGAAAGAATGTTCAAATGAGCCTGTGAGTTCCTGCTTTGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACCCTGAAAGAATGTTCAAATGAGCCTGTGAGTTCCTGCTTTGGAG  550

seq1  GTACAGCGATGTCAGAAAAACAGGCAGACGCCCTGCTTACGCACTCCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGCGATGTCAGAAAAACAGGCAGACGCCCTGCTTACGCACTCCTCA  600

seq1  GAGTCCTTAGGACTCACTCTCATTCACGGAGCTTGGTACGGAGCTGGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCTTAGGACTCACTCTCATTCACGGAGCTTGGTACGGAGCTGGGAG  650

seq1  CATCTTTGGAGCTAACGAGAGAAATTCACCCATAACATTTCTATTATCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTGGAGCTAACGAGAGAAATTCACCCATAACATTTCTATTATCTC  700

seq1  CCGCTGATCATCAACCCTTGGCCTGCGAAACACACATAGCCTGACTTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTGATCATCAACCCTTGGCCTGCGAAACACACATAGCCTGACTTGCA  750

seq1  ACCAATTCAATGACTGCATTGGTGAGTTGTTATGTCTCTGACATACCAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATTCAATGACTGCATTGGTGAGTTGTTATGTCTCTGACATACCAGG  800

seq1  TCCTCTATTTCTGTAAATTTAC-TTCTTATGATAAATTTAAAGGATGCTT  849
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCCTCTATTTCTGTAAATTTACTTTCTTATGATAAATTTAAAGGATGCTT  850

seq1  TTATGACACCAATGAGTTTAAACCTCAGCCCATGGAAAGGAACTTTATGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGACACCAATGAGTTTAAACCTCAGCCCATGGAAAGGAACTTTATGG  900

seq1  TGGAGGATTTGAACTTTTTCTGTTGTTGTTAATACTCAAATTTTAAGTTA  949
      ||||||||||||||||||||||||| |||| |||||| ||||||||| ||
seq2  TGGAGGATTTGAACTTTTTCTGTTG-TGTT-ATACTC-AATTTTAAG-TA  946

seq1  AGACATGGCTATGAGGACGAGTGACCAAATCTTAAGCCAATCAAAGTCAT  999
      |||||||||||||| |||||||||||||||| |||||| |||||||||||
seq2  AGACATGGCTATGA-GACGAGTGACCAAATC-TAAGCC-ATCAAAGTCAT  993

seq1  TCAAAGTCAATTGACAAAGAGGGATTTTGCTTCTAGACTCCATGTTAATA  1049
      |||||||| |||||| |||| ||||||||| |||||||||  ||||||||
seq2  TCAAAGTC-ATTGAC-AAGAAGGATTTTGC-TCTAGACTCATTGTTAATA  1040

seq1  TTCAACTCAT-AGTCA-GTTCTTCATGACAAGAGGCTAGCATGTTCACAG  1097
      |||||||||| ||||| |||||||||||| ||||||||||||| ||||||
seq2  TTCAACTCATAAGTCAGGTTCTTCATGAC-AGAGGCTAGCATG-TCACAG  1088

seq1  GCAGTGTGATCCTTTGTCGAAGTCTACAGCTTTGACCGTGCAAGCTTCTG  1147
      |||| | |||| ||||||||||||| |||| ||||||| |||||||||||
seq2  GCAGGGGGATCTTTTGTCGAAGTCT-CAGC-TTGACCGGGCAAGCTTCTG  1136

seq1  CACTGACTGAGCCTCATGG-ACTGAA  1172
      | ||||||||| ||||||| ||||||
seq2  C-CTGACTGAG-CTCATGGTACTGAA  1160