BAC Information

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BAC

Clone NameB6Ng01-079M17
Chromosome3 (Build37)
Map Location 155,295,123 - 155,400,054
singlet/doubletdoublet
Overlap genenone
Upstream geneBC007180, Tnni3k, Fpgt, Lrrc44, EG383956, Scp2-ps1
Downstream geneEG668902, LOC624519, LOC100040901, 4930570G19Rik, Negr1, LOC100041152
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079M17.bB6Ng01-079M17.g
ACCDH895103DH895104
length1,2171,001
definitionDH895103|Mus musculus domesticus DNA, BAC clone: B6Ng01-079M17, 5' end.DH895104|Mus musculus domesticus DNA, BAC clone: B6Ng01-079M17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,295,123 - 155,296,358)(155,399,043 - 155,400,054)
sequence
gaattcagtgaaagcagcaaaggatctgaaaatgggttatgaatggatat
gagtgcttacattagaaaataagatttctgaaataataacggatctgtgc
ttactgctgtggtagaaataaaaatataagttatagcaacaagataaatg
taaaactagataaaaaagaggcagaagacacagaaatggtcattttaaaa
tttacaaaactgacaaatacaaccaagacaagcaaaagcattagaggtta
atattataattaaaatagaatagaattagagatatttcaggattgatcaa
aattaattcagaaatgttaataacaatatgaatgcattctgaaatttaga
atgaattgacacaaatctatcaaattataatctactataagaaggcatta
ctaaataatattatttttaatagtgtcaaatgtaagagtggtgacaacta
acgcatgagggcagtcagcacaaattcggattctataaggtatttcagga
tatgaagttaacatttctcataatacttccagatgcccaggttaatgaca
cattaaatttcactaatgatttccggacatgctggtcctcacagcaaaca
caagtctgtgagagaaggaaaggagagttcggtttcagtcaccaatcctt
gtgcaaccttacaaaacaaaaaattgaaaaaattatctataagtgtcaac
agttcctaatatttattaaaatactacaaggctaatttaagattaagact
ggcttcacattactgtctgaagccacatatgtcaaatggataccatctga
ccactctgtatgggaaatgaaaaaatcagtaaaattgcagaacccatttt
gatgaagcaaaattgtagagaatgagaagctaaaatgaataataacaaaa
tctccacagctgattcatttatggggaaatgctgagtccattactctttt
ttgatagtgacaaatcacatagcgattatgatatagctgtgatgtatttt
ccagtgtaacttttattgggtgtattgattgcacatggtactgttacata
agacattttaatacaagactttgacatagaagaagcatacatcagaaaca
caactacccctctcatattctttttattaattaataacagtaatatgtgg
gagtgatacctcaaaaagatggatgctttttgtgaagtatctggtaaatc
agaaatactttcgtaaa
gaattccttaggagagatatttcgtttttaaaaaggcaaaacaaaacaaa
acaaacaaataaaaaacctttgatgtgtcctatatcctgcttccttttaa
gctagtttttagttttatttggatattgtttctatagttagaacaaaaat
taaatctcataatcaaaactctgtctttgagaaagtttacagcaacactg
gatgtgacctctcaaaaataaatctttgctgtggtttagaaactggttta
tataaaagcaatccatataccaaaataagtatccatgtaagaactaatta
ctgcaaaagtttcagagaactgaggactagaaaaccaactgtattaagcc
ccagagaaaaaggtcttgtctctcaaaatatctatatctatataatctat
ataattatcatctatatgtatatacatctacatctagatctatctatata
ttgattggtagttttatttctctctttttctgtgcgtgtgtgtgtgtgtg
tttgtgtgtgtgtacatgaatatgtagaatgcacacagaggccaggaaaa
gatactgggtcacctttagccatagttacagagttttaacccacacctga
tataagtggtggtaatggaacccatatactctgtaagaaaagtgtgttct
tttaactggtaagccattgcttcagatccaaactagattttaacatttta
acttttggacactcttttgttctatttatttatttaaacctcctattaca
ggtgttctcaattcagtaggaaatacaacctagacttcagatttacactt
ctcaagtgtcagcaggtatcagaggttcatcactggttgttctcagatca
ccctgccttatttggagtgagtggacacatggctaatgatgagaatgagt
ctgaaccaggacatattcaaacacatcataaaagccactgtgtacacgca
actttttcatttcaacatttatgacttatcattagaaatagttcaactta
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_155295123_155296358
seq2: B6Ng01-079M17.b_47_1263

seq1  GAATTCAGTGAAAGCAGCAAAGGATCTGAAAATGGGTTATGAATGGATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGAAAGCAGCAAAGGATCTGAAAATGGGTTATGAATGGATAT  50

seq1  GAGTGCTTACATTAGAAAATAAGATTTCTGAAATAATAACGGATCTGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCTTACATTAGAAAATAAGATTTCTGAAATAATAACGGATCTGTGC  100

seq1  TTACTGCTGTGGTAGAAATAAAAATATAAGTTATAGCAACAAGATAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGCTGTGGTAGAAATAAAAATATAAGTTATAGCAACAAGATAAATG  150

seq1  TAAAACTAGATAAAAAAGAGGCAGAAGACACAGAAATGGTCATTTTAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTAGATAAAAAAGAGGCAGAAGACACAGAAATGGTCATTTTAAAA  200

seq1  TTTACAAAACTGACAAATACAACCAAGACAAGCAAAAGCATTAGAGGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAAAACTGACAAATACAACCAAGACAAGCAAAAGCATTAGAGGTTA  250

seq1  ATATTATAATTAAAATAGAATAGAATTAGAGATATTTCAGGATTGATCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATAATTAAAATAGAATAGAATTAGAGATATTTCAGGATTGATCAA  300

seq1  AATTAATTCAGAAATGTTAATAACAATATGAATGCATTCTGAAATTTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATTCAGAAATGTTAATAACAATATGAATGCATTCTGAAATTTAGA  350

seq1  ATGAATTGACACAAATCTATCAAATTATAATCTACTATAAGAAGGCATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTGACACAAATCTATCAAATTATAATCTACTATAAGAAGGCATTA  400

seq1  CTAAATAATATTATTTTTAATAGTGTCAAATGTAAGAGTGGTGACAACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATAATATTATTTTTAATAGTGTCAAATGTAAGAGTGGTGACAACTA  450

seq1  ACGCATGAGGGCAGTCAGCACAAATTCGGATTCTATAAGGTATTTCAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCATGAGGGCAGTCAGCACAAATTCGGATTCTATAAGGTATTTCAGGA  500

seq1  TATGAAGTTAACATTTCTCATAATACTTCCAGATGCCCAGGTTAATGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGTTAACATTTCTCATAATACTTCCAGATGCCCAGGTTAATGACA  550

seq1  CATTAAATTTCACTAATGATTTCCGGACATGCTGGTCCTCACAGCAAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAATTTCACTAATGATTTCCGGACATGCTGGTCCTCACAGCAAACA  600

seq1  CAAGTCTGTGAGAGAAGGAAAGGAGAGTTCGGTTTCAGTCACCAATCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCTGTGAGAGAAGGAAAGGAGAGTTCGGTTTCAGTCACCAATCCTT  650

seq1  GTGCAACCTTACAAAACAAAAAATTGAAAAAATTATCTATAAGTGTCAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAACCTTACAAAACAAAAAATTGAAAAAATTATCTATAAGTGTCAAC  700

seq1  AGTTCCTAATATTTATTAAAATACTACAAGGCTAATTTAAGATTAAGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTAATATTTATTAAAATACTACAAGGCTAATTTAAGATTAAGACT  750

seq1  GGCTTCACATTACTGTCTGAAGCCACATATGTCAAATGGATACCATCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCACATTACTGTCTGAAGCCACATATGTCAAATGGATACCATCTGA  800

seq1  CCACTCTGTATGGGAAATGAAAAAATCAGTAAAATTGCAGAACCCATTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCTGTATGGGAAATGAAAAAATCAGTAAAATTGCAGAACCCATTTT  850

seq1  GATGAAGCAAAATTGTAGAGAATGAGAAGCTAAAATGAATAATAACAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGCAAAATTGTAGAGAATGAGAAGCTAAAATGAATAATAACAAAA  900

seq1  TCTCCACAGCTGATTCATTTATGGGGAAATGCTGAGTCCATTACTCTTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCACAGCTGATTCATTTATGGGGAAATGCTGAGTCCATTACTCTTTT  950

seq1  TTGATAGTGACAAATCACATAGCGATTATGAATAATAGCTGTGATGTATT  1000
      |||||||||||||||||||||||||||||||   ||||||||||||||||
seq2  TTGATAGTGACAAATCACATAGCGATTATGA--TATAGCTGTGATGTATT  998

seq1  TTCCAGGTGTTAACTTTTATTGTGTGTATTGATTGCACATGGTACTGTTA  1050
      ||||| ||| |||||||||||| |||||||||||||||||||||||||||
seq2  TTCCA-GTG-TAACTTTTATTGGGTGTATTGATTGCACATGGTACTGTTA  1046

seq1  CATAAGGACATTTTAATACAAGGACTTTGGACATAG-AGAAGCCATTACA  1099
      ||||| ||||||||||||||| |||||| ||||||| ||||||   ||||
seq2  CATAA-GACATTTTAATACAA-GACTTT-GACATAGAAGAAGC--ATACA  1091

seq1  TCAAGAACACAAAACTA-CCCTCTCATTATTTCTTTTTTTATTAATTTAT  1148
      |||  |||||  ||||| |||||||| |||   | |||||||||||| ||
seq2  TCAGAAACAC--AACTACCCCTCTCA-TAT---TCTTTTTATTAATTAAT  1135

seq1  AACAGTAATATGTGG--ATGATAACTCAAAAAAGATGGATGCTTTTTGTG  1196
      |||||||||||||||   ||||| ||| ||||||||||||||||||||||
seq2  AACAGTAATATGTGGGAGTGATACCTC-AAAAAGATGGATGCTTTTTGTG  1184

seq1  AAGTAACTGGTAAAATCAGGGAAAAATAACATTTCGTAAA  1236
      ||||| ||||| |||||||    |||||   |||||||||
seq2  AAGTATCTGGT-AAATCAG----AAATA--CTTTCGTAAA  1217

seq1: chr3_155399043_155400054
seq2: B6Ng01-079M17.g_69_1069 (reverse)

seq1  TTAAGTTTGAACTATTTCTACTGAATGAGTCATAAATGTTGGAAATGAAA  50
      ||||| |||||||||||||| || || ||||||||||||| |||||||||
seq2  TTAAG-TTGAACTATTTCTAATG-ATAAGTCATAAATGTT-GAAATGAAA  47

seq1  AATGTTGCGTGTACACAGTTGCTTTTATGATGTGTTTGAAATATTGTCCT  100
      || |||||||||||||||| |||||||||||||||||| |||| ||||||
seq2  AA-GTTGCGTGTACACAGTGGCTTTTATGATGTGTTTG-AATA-TGTCCT  94

seq1  GGTTCAGGACTCATTCTCATCATAAGCCATGTGTCCACTCACTCAAAATA  150
      |||||| |||||||||||||||| |||||||||||||||||||| |||||
seq2  GGTTCA-GACTCATTCTCATCATTAGCCATGTGTCCACTCACTCCAAATA  143

seq1  AGCCAGGGTGATCTGAGAACAACCAGTTGATGAACCTCTGATACCTGGCT  200
      || ||||||||||||||||||||||| ||||||||||||||||||| |||
seq2  AGGCAGGGTGATCTGAGAACAACCAG-TGATGAACCTCTGATACCT-GCT  191

seq1  GACACTTGAG-AGTGTAAATCTGAAAGTCTAGGTTGTAATTTCCTACTGA  249
      |||||||||| |||||||||||| ||||||||||||| ||||||||||||
seq2  GACACTTGAGAAGTGTAAATCTG-AAGTCTAGGTTGT-ATTTCCTACTGA  239

seq1  ATTGAGAATCACCTGTAATAGGAGGTTTAAATAAATAAATAGAACAAAAG  299
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGAA-CACCTGTAATAGGAGGTTTAAATAAATAAATAGAACAAAAG  288

seq1  AGTGTCCAAAAGTTAAAATGTTAAAATCTAGTTTGGATCTGAAGCAATGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCCAAAAGTTAAAATGTTAAAATCTAGTTTGGATCTGAAGCAATGG  338

seq1  CTTACCAGTTAAAAGAACACACTTTTCTTACAGAGTATATGGGTTCCATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCAGTTAAAAGAACACACTTTTCTTACAGAGTATATGGGTTCCATT  388

seq1  ACCACCACTTATATCAGGTGTGGGTTAAAACTCTGTAACTATGGCTAAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCACTTATATCAGGTGTGGGTTAAAACTCTGTAACTATGGCTAAAG  438

seq1  GTGACCCAGTATCTTTTCCTGGCCTCTGTGTGCATTCTACATATTCATGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCCAGTATCTTTTCCTGGCCTCTGTGTGCATTCTACATATTCATGT  488

seq1  ACACACACACAAACACACACACACACACGCACAGAAAAAGAGAGAAATAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACAAACACACACACACACACGCACAGAAAAAGAGAGAAATAA  538

seq1  AACTACCAATCAATATATAGATAGATCTAGATGTAGATGTATATACATAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACCAATCAATATATAGATAGATCTAGATGTAGATGTATATACATAT  588

seq1  AGATGATAATTATATAGATTATATAGATATAGATATTTTGAGAGACAAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATAATTATATAGATTATATAGATATAGATATTTTGAGAGACAAGA  638

seq1  CCTTTTTCTCTGGGGCTTAATACAGTTGGTTTTCTAGTCCTCAGTTCTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTCTCTGGGGCTTAATACAGTTGGTTTTCTAGTCCTCAGTTCTCT  688

seq1  GAAACTTTTGCAGTAATTAGTTCTTACATGGATACTTATTTTGGTATATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTTTGCAGTAATTAGTTCTTACATGGATACTTATTTTGGTATATG  738

seq1  GATTGCTTTTATATAAACCAGTTTCTAAACCACAGCAAAGATTTATTTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCTTTTATATAAACCAGTTTCTAAACCACAGCAAAGATTTATTTTT  788

seq1  GAGAGGTCACATCCAGTGTTGCTGTAAACTTTCTCAAAGACAGAGTTTTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGTCACATCCAGTGTTGCTGTAAACTTTCTCAAAGACAGAGTTTTG  838

seq1  ATTATGAGATTTAATTTTTGTTCTAACTATAGAAACAATATCCAAATAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGAGATTTAATTTTTGTTCTAACTATAGAAACAATATCCAAATAAA  888

seq1  ACTAAAAACTAGCTTAAAAGGAAGCAGGATATAGGACACATCAAAGGTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAAACTAGCTTAAAAGGAAGCAGGATATAGGACACATCAAAGGTTT  938

seq1  TTTATTTGTTTGTTTTGTTTTGTTTTGCCTTTTTAAAAACGAAATATCTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTGTTTGTTTTGTTTTGTTTTGCCTTTTTAAAAACGAAATATCTC  988

seq1  TCCTAAGGAATTC  1012
      |||||||||||||
seq2  TCCTAAGGAATTC  1001