BAC Information

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BAC

Clone NameB6Ng01-079O06
Chromosome3 (Build37)
Map Location 82,103,694 - 82,250,085
singlet/doubletdoublet
Overlap geneMtap9
Upstream geneLOC229443, LOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3
Downstream geneNpy2r, LOC100041940, EG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094, Dchs2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079O06.bB6Ng01-079O06.g
ACCDH895175DH895176
length1,154511
definitionDH895175|Mus musculus domesticus DNA, BAC clone: B6Ng01-079O06, 5' end.DH895176|Mus musculus domesticus DNA, BAC clone: B6Ng01-079O06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,248,924 - 82,250,085)(82,103,694 - 82,104,210)
sequence
gaattccatttggtctcttattctcgcatacaaaccatctatcagagtgg
taggaagaaatccaggcagctaaaggaactgacgctgcatgaaattgtgt
agaatcagttcttagttcaccctaaaagtaaaagaaaaaagtgtatagat
tattttaattatatgttgtactgagttaattataatatcatgtgaagctt
taaaattagatgataaatctgggaatactttgctttccctcaatgatacc
atttaatatataggtactgtatttaaaaaagtagcaataaacaatgaaaa
taagccagcaacctcaaccagagttcatcagttttatacacccatgtgta
taaattgatggtgtgtataattaggcacatgcctaattatagtatatttt
gtcataggtgtgcatttctttagagatcatcatatttaagacatgcaata
gtttctcaccacaaaacccccattgtgtcccattcccccatctgttacct
tctatgttcctcagttcctggcaattattattacggtttcgttctcaaca
actatcttctcaccccaattgacctaaggatttcttctgtctacctgttc
ctttggttttaactgtgaaagacagaactatatgtactgaagggtggtgg
agagacagggtttattgaagggtagagagaggaaagcgcgttctgaaaga
gtgagagcaagtgatggccagagagctccattctaggtaagctttgggct
accttatgaaacctctagggcaagggatgtttccctgagggactttgcac
tgtccaggtattagcacgcttgtttttgactccacagaaagagcagtgat
gtgtctgtattctctgaaagcctcctcctgcacactaatctgataaggtt
tggcctcatgcagacagtttatgatagttatccattgctgacctttagag
tagtttagaatgtcatatctcatccagggctacacattttgtcagttctt
ttgctgagggcctaatccaagttcttttgtttttagtcagtgcttttata
aactgtgaccacaggagagtccatttccctatgctctacaagtctactag
catctaattcctacattaaaaaaaaaaccgaaaagatatactgattatta
ctgg
caggggtctagtggggcaactggtctttcatgcagagggcttcaatcatg
cataggaataccaagagagaaggagagtgacagagaaaggcagagagaga
gagagagagagagagagagagagagagagagagagagagagagagaagat
gcattagacaaggggcatggggggatgggggcaggagagagaaggggtgt
cacttagaaagttcaagtgctgtgaagcttctagcttgaggggaaaaaag
acaataaaaccaagcaaccgctggctgtccaccacacaaagaagtcaata
ctttgacaccaaggttttttttaagaaagtaaaagcttttgttgcaggct
aaatgtacaccccaaatttgtcaggcttctccttacagggagaaggggtg
gcaatagtgggaagtttggggtgtctttgcacaggcacaatccagatact
tctaatatagcatctagtgtctctccttccctcccccacacccccggagg
ggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_82248924_82250085
seq2: B6Ng01-079O06.b_46_1199 (reverse)

seq1  CCAGTAATAATTCCACTTATTAATCTTTTCTGTTTTTTTTTTTATGTATA  50
      |||||||||||  ||  |||  |||||||| ||||||||||| |||||  
seq2  CCAGTAATAAT--CA-GTAT--ATCTTTTCGGTTTTTTTTTTAATGTA--  43

seq1  GTGAATTAGATGCTAGTAGACTTGTAGGGCATAGGG-AATGGACCTCTTC  99
        ||||||||||||||||||||||||| |||||||| |||||| ||||  
seq2  -GGAATTAGATGCTAGTAGACTTGTAGAGCATAGGGAAATGGA-CTCT--  89

seq1  CCTGTGGTCAACAGTTTATAAAAGCACTGACT-AGAACAAAGGAACTTGG  148
      ||||||||| |||||||||||||||||||||| | |||||| ||||||||
seq2  CCTGTGGTC-ACAGTTTATAAAAGCACTGACTAAAAACAAAAGAACTTGG  138

seq1  ATTA-GCCCTCAGCACAGAACCTGAC-AGATGTGTAGCCCTGGATGAGAT  196
      |||| |||||||||| |  | ||||| | |||||||||||||||||||||
seq2  ATTAGGCCCTCAGCAAAAGAACTGACAAAATGTGTAGCCCTGGATGAGAT  188

seq1  ATGACATTCTAAACTACTCTAAAGGTCAGCAATGGATAACTATCATAAAC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACATTCTAAACTACTCTAAAGGTCAGCAATGGATAACTATCATAAAC  238

seq1  TGTCTGCATGAGGCCAAACCTTATCAGATTAGTGTGCAGGAGGAGGCTTT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCATGAGGCCAAACCTTATCAGATTAGTGTGCAGGAGGAGGCTTT  288

seq1  CAGAGAATACAGACACATCACTGCTCCTTCTGTGGAGTCAAAAACAAGCC  346
      |||||||||||||||||||||||||| |||||||||||||||||||||| 
seq2  CAGAGAATACAGACACATCACTGCTCTTTCTGTGGAGTCAAAAACAAGCG  338

seq1  TGCTAATACCTGGACAGTGCAAAGTCCCTCAGGGAAACATCCCTTGCCCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAATACCTGGACAGTGCAAAGTCCCTCAGGGAAACATCCCTTGCCCT  388

seq1  AGAGGTTTCATAAGGTAGCCCAAAGCTTACCTAGAATGGAGCTCTCTGGC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTTTCATAAGGTAGCCCAAAGCTTACCTAGAATGGAGCTCTCTGGC  438

seq1  CATCACTTGCTCTCACTCTTTCAGAACGCGCTTTCCTCTCTCTACCCTTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACTTGCTCTCACTCTTTCAGAACGCGCTTTCCTCTCTCTACCCTTC  488

seq1  AATAAACCCTGTCTCTCCACCACCCTTCAGTACATATAGTTCTGTCTTTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACCCTGTCTCTCCACCACCCTTCAGTACATATAGTTCTGTCTTTC  538

seq1  ACAGTTAAAACCAAAGGAACAGGTAGACAGAAGAAATCCTTAGGTCAATT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTAAAACCAAAGGAACAGGTAGACAGAAGAAATCCTTAGGTCAATT  588

seq1  GGGGTGAGAAGATAGTTGTTGAGAACGAAACCGTAATAATAATTGCCAGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGAGAAGATAGTTGTTGAGAACGAAACCGTAATAATAATTGCCAGG  638

seq1  AACTGAGGAACATAGAAGGTAACAGATGGGGGAATGGGACACAATGGGGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGGAACATAGAAGGTAACAGATGGGGGAATGGGACACAATGGGGG  688

seq1  TTTTGTGGTGAGAAACTATTGCATGTCTTAAATATGATGATCTCTAAAGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGGTGAGAAACTATTGCATGTCTTAAATATGATGATCTCTAAAGA  738

seq1  AATGCACACCTATGACAAAATATACTATAATTAGGCATGTGCCTAATTAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCACACCTATGACAAAATATACTATAATTAGGCATGTGCCTAATTAT  788

seq1  ACACACCATCAATTTATACACATGGGTGTATAAAACTGATGAACTCTGGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCATCAATTTATACACATGGGTGTATAAAACTGATGAACTCTGGT  838

seq1  TGAGGTTGCTGGCTTATTTTCATTGTTTATTGCTACTTTTTTAAATACAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTTGCTGGCTTATTTTCATTGTTTATTGCTACTTTTTTAAATACAG  888

seq1  TACCTATATATTAAATGGTATCATTGAGGGAAAGCAAAGTATTCCCAGAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTATATATTAAATGGTATCATTGAGGGAAAGCAAAGTATTCCCAGAT  938

seq1  TTATCATCTAATTTTAAAGCTTCACATGATATTATAATTAACTCAGTACA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCATCTAATTTTAAAGCTTCACATGATATTATAATTAACTCAGTACA  988

seq1  ACATATAATTAAAATAATCTATACACTTTTTTCTTTTACTTTTAGGGTGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATAATTAAAATAATCTATACACTTTTTTCTTTTACTTTTAGGGTGA  1038

seq1  ACTAAGAACTGATTCTACACAATTTCATGCAGCGTCAGTTCCTTTAGCTG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGAACTGATTCTACACAATTTCATGCAGCGTCAGTTCCTTTAGCTG  1088

seq1  CCTGGATTTCTTCCTACCACTCTGATAGATGGTTTGTATGCGAGAATAAG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGATTTCTTCCTACCACTCTGATAGATGGTTTGTATGCGAGAATAAG  1138

seq1  AGACCAAATGGAATTC  1162
      ||||||||||||||||
seq2  AGACCAAATGGAATTC  1154

seq1: chr3_82103694_82104210
seq2: B6Ng01-079O06.g_70_586

seq1  GAATTCCAGGGGTCTAGTGGGGCAACTGGTCTTTCATGCAGAGGGCTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGGTCTAGTGGGGCAACTGGTCTTTCATGCAGAGGGCTTCA  50

seq1  ATCATGCATAGGAATACCAAGAGAGAAGGAGAGTGACAGAGAAAGGCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGCATAGGAATACCAAGAGAGAAGGAGAGTGACAGAGAAAGGCAGA  100

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  150

seq1  GAAGATGCATTAGACAAGGGGCATGGGGGGATGGGGGCAGGAGAGAGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGCATTAGACAAGGGGCATGGGGGGATGGGGGCAGGAGAGAGAAG  200

seq1  GGGTGTCACTTAGAAAGTTCAAGTGCTGTGAAGCTTCTAGCTTGAGGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTCACTTAGAAAGTTCAAGTGCTGTGAAGCTTCTAGCTTGAGGGGA  250

seq1  AAAAAGACAATAAAACCAAGCAACCGCTGGCTGTCCACCACACAAAGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGACAATAAAACCAAGCAACCGCTGGCTGTCCACCACACAAAGAAG  300

seq1  TCAATACTTTGACACCAAGGTTTTTTTTAAGAAAGTAAAAGCTTTTGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATACTTTGACACCAAGGTTTTTTTTAAGAAAGTAAAAGCTTTTGTTG  350

seq1  CAGGCTAAATGTACACCCCAAATTTGTCAGGCTTCTCCTTACAGGGAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTAAATGTACACCCCAAATTTGTCAGGCTTCTCCTTACAGGGAGAA  400

seq1  GGGGTGGCAATAGTGGGAAGTTTGGGGTGTCTTTGCACAGGCACAATCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGGCAATAGTGGGAAGTTTGGGGTGTCTTTGCACAGGCACAATCCA  450

seq1  GATACTTCTAATATAGCATCTAGTGTCTCTCCTTCCCTCCCCCACACCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTTCTAATATAGCATCTAGTGTCTCTCCTTCCCTCCCCCACACCCC  500

seq1  CGGAGGGGGGGGGGGGG  517
      |||||||||||||||||
seq2  CGGAGGGGGGGGGGGGG  517