BAC Information

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BAC

Clone NameB6Ng01-080B12
Chromosome3 (Build37)
Map Location 82,975,334 - 83,109,326
singlet/doubletdoublet
Overlap geneDchs2
Upstream geneMtap9, Npy2r, LOC100041940, EG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094
Downstream gene1700028M03Rik, LOC100042007, LOC100042091, Sfrp2, LOC633522, Tlr2, D930015E06Rik, Mnd1, Trim2, EG624713
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080B12.bB6Ng01-080B12.g
ACCDH895327DH895328
length5951,094
definitionDH895327|Mus musculus domesticus DNA, BAC clone: B6Ng01-080B12, 5' end.DH895328|Mus musculus domesticus DNA, BAC clone: B6Ng01-080B12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,108,711 - 83,109,326)(82,975,334 - 82,976,439)
sequence
gaattctctagactcctaggcttacaactgaatctgcaatggcaatcttc
tgtagtcttttgcattgtgccctaatttgtataatacccaagaaacttaa
ggatacactcacctggctcacagttttcagtcacgagtcctgtgtagaga
tagcggctgaaggacagcttcataccttctccttccttgtggacaaccaa
gagacccatggttgtccttgccggggtcccttgatctgtggccaataact
gcaaccagataggaaagtgttctgaagacagattctgctgcagtttaact
tctcctgtatatccatcgatggaaaacacggactggcggtctgcaaaact
aaacgtaacagttccattgggccctgcatctgggtcactggctctcagat
gaacaacggtctggtttagggccagcattgggaggtgaaagcatcaactg
ggttctcttcccaaacaggatcgttgtcgttagcatccgtgacgatagat
atggagagccgctcttttggcaccttaatgctgcagtctcggtacgcctg
atgtgtgctagactgatccgatcagggcatggcagttccagatcc
gaattcaagaagttaatcaccaaaaacaccaaacaatccaatcaaaaaat
gggatatagaactaaaccgagaattcacaactgaagaatcttgaatggtt
gagaagcacctaaagaaatgttcaaagtccttagtgatcagagaaatgca
aatcaaaacgcccctgagattccaccttacaccaatcagaatggctaaga
tcaaaaccttaggtgataacacctgttggaaaggatgtagagacagagga
acactcctccattgctggtgggattgcaaactggtacaaccactctggaa
atcaatctggaggttcctcagaaaattggaaatacatctacctgaagacc
cagctataccatccttgggaatatatactgtgtttcttcttatgaaacaa
agctggtgacgtctgaagaacttagaaggcaggagttttgtcatgtgcat
atatgcttttctttacggattttagacaaggtttcactctcaggggagga
gctgctttctaaattgccacatacctcatttcctcttgttaggataacta
aattgcttcagagaaagaacaatccccacaaatcagaattggcttttatt
cttttatatggttgacaatgatttcttttaacctgtgatgagactcaaac
actgtatgttaagtactcaacaaacccatcagtttgaatattcagtattg
ttttgtggtcaaatcactgaactgtgaaatttttcctccagctccttccg
gttctttcccatctcccttcctatccagagccacatcttttctctttctc
cttagaaacaaacaggcatctaaggaagaataagatgaaataagataatg
taaatccagacaggtcagaagaggacaaacaaagacacagaaaaaaaaaa
aaaaccctatagatgcagaagcacaggaattcactaataacacataattg
aagccataataaattttcaaaaaacttgtgaagtttcaaaagatgtccta
cacaacatatgagaccagacttcaaaacgctgtgagttgttcgtgtggtc
attactgctgggcatgggcctacttactgttaaggagtggtttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_83108711_83109326
seq2: B6Ng01-080B12.b_45_639 (reverse)

seq1  GGATCTTGAGAACTAGCCATGCCCTTGATCGAGAATCCAGGTCTCAGCAC  50
      ||||||   ||||| ||||||||| |||||  | |||   |||| |||||
seq2  GGATCT--GGAACT-GCCATGCCC-TGATC--GGATC--AGTCT-AGCAC  41

seq1  ACATTCCAGGCTGTAGCCAGAGACTGCAGCACTCAAGGTGCCAAAAGCAG  100
      ||||  ||||| |||  | |||||||||||| | ||||||||||||| ||
seq2  ACAT--CAGGC-GTA--CCGAGACTGCAGCA-TTAAGGTGCCAAAAG-AG  84

seq1  CGTGCTCTCCATACTCATATCCGTCACGGATGCTAACGACAACGATCCTG  150
      || |||||||||| || ||| |||||||||||||||||||||||||||||
seq2  CG-GCTCTCCATA-TC-TAT-CGTCACGGATGCTAACGACAACGATCCTG  130

seq1  TTTGGGAAGAGAACCCAGTTGATGCTTTCATCTCCCCAATGCTGGCCCTA  200
      |||||||||||||||||||||||||||||| || ||||||||||||||||
seq2  TTTGGGAAGAGAACCCAGTTGATGCTTTCACCT-CCCAATGCTGGCCCTA  179

seq1  AACCAGACCGTTGTTCATCTGAGAGCCAGTGACCCAGATGCAGGGCCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGACCGTTGTTCATCTGAGAGCCAGTGACCCAGATGCAGGGCCCAA  229

seq1  TGGAACTGTTACGTTTAGTTTTGCAGACCGCCAGTCCGTGTTTTCCATCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTGTTACGTTTAGTTTTGCAGACCGCCAGTCCGTGTTTTCCATCG  279

seq1  ATGGATATACAGGAGAAGTTAAACTGCAGCAGAATCTGTCTTCAGAACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATATACAGGAGAAGTTAAACTGCAGCAGAATCTGTCTTCAGAACAC  329

seq1  TTTCCTATCTGGTTGCAGTTATTGGCCACAGATCAAGGGACCCCGGCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTATCTGGTTGCAGTTATTGGCCACAGATCAAGGGACCCCGGCAAG  379

seq1  GACAACCATGGGTCTCTTGGTTGTCCACAAGGAAGGAGAAGGTATGAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACCATGGGTCTCTTGGTTGTCCACAAGGAAGGAGAAGGTATGAAGC  429

seq1  TGTCCTTCAGCCGCTATCTCTACACAGGACTCGTGACTGAAAACTGTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTCAGCCGCTATCTCTACACAGGACTCGTGACTGAAAACTGTGAG  479

seq1  CCAGGTGAGTGTATCCTTAAGTTTCTTGGGTATTATACAAATTAGGGCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTGAGTGTATCCTTAAGTTTCTTGGGTATTATACAAATTAGGGCAC  529

seq1  AATGCAAAAGACTACAGAAGATTGCCATTGCAGATTCAGTTGTAAGCCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAAAAGACTACAGAAGATTGCCATTGCAGATTCAGTTGTAAGCCTA  579

seq1  GGAGTCTAGAGAATTC  616
      ||||||||||||||||
seq2  GGAGTCTAGAGAATTC  595

seq1: chr3_82975334_82976439
seq2: B6Ng01-080B12.g_69_1162

seq1  GAATTCAAGAAGTTAATCACCAAAAACACCAAACAATCCAATCAAAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAAGTTAATCACCAAAAACACCAAACAATCCAATCAAAAAAT  50

seq1  GGGATATAGAACTAAACCGAGAATTCACAACTGAAGAATCTTGAATGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATATAGAACTAAACCGAGAATTCACAACTGAAGAATCTTGAATGGTT  100

seq1  GAGAAGCACCTAAAGAAATGTTCAAAGTCCTTAGTGATCAGAGAAATGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCACCTAAAGAAATGTTCAAAGTCCTTAGTGATCAGAGAAATGCA  150

seq1  AATCAAAACGCCCCTGAGATTCCACCTTACACCAATCAGAATGGCTAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAAACGCCCCTGAGATTCCACCTTACACCAATCAGAATGGCTAAGA  200

seq1  TCAAAACCTTAGGTGATAACACCTGTTGGAAAGGATGTAGAGACAGAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACCTTAGGTGATAACACCTGTTGGAAAGGATGTAGAGACAGAGGA  250

seq1  ACACTCCTCCATTGCTGGTGGGATTGCAAACTGGTACAACCACTCTGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCCTCCATTGCTGGTGGGATTGCAAACTGGTACAACCACTCTGGAA  300

seq1  ATCAATCTGGAGGTTCCTCAGAAAATTGGAAATACATCTACCTGAAGACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATCTGGAGGTTCCTCAGAAAATTGGAAATACATCTACCTGAAGACC  350

seq1  CAGCTATACCATCCTTGGGAATATATACTGTGTTTCTTCTTATGAAACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTATACCATCCTTGGGAATATATACTGTGTTTCTTCTTATGAAACAA  400

seq1  AGCTGGTGACGTCTGAAGAACTTAGAAGGCAGGAGTTTTGTCATGTGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGTGACGTCTGAAGAACTTAGAAGGCAGGAGTTTTGTCATGTGCAT  450

seq1  ATATGCTTTTCTTTACGGATTTTAGACAAGGTTTCACTCTCAGGGGAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCTTTTCTTTACGGATTTTAGACAAGGTTTCACTCTCAGGGGAGGA  500

seq1  GCTGCTTTCTAAATTGCCACATACCTCATTTCCTCTTGTTAGGATAACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTTTCTAAATTGCCACATACCTCATTTCCTCTTGTTAGGATAACTA  550

seq1  AATTGCTTCAGAGAAAGAACAATCCCCACAAATCAGAATTGGCTTTTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCTTCAGAGAAAGAACAATCCCCACAAATCAGAATTGGCTTTTATT  600

seq1  CTTTTATATGGTTGACAATGATTTCTTTTAACCTGTGATGAGACTCAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATATGGTTGACAATGATTTCTTTTAACCTGTGATGAGACTCAAAC  650

seq1  ACTGTATGTTAAGTACTCAACAAACCCATCAGTTTGAATATTCAGTATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATGTTAAGTACTCAACAAACCCATCAGTTTGAATATTCAGTATTG  700

seq1  TTTTGTGGTCAAATCACTGAACTGTGAAATTTTTCCTCCAGCTCCTTCCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGGTCAAATCACTGAACTGTGAAATTTTTCCTCCAGCTCCTTCCG  750

seq1  GTTCTTTCCCATCTCCCTTCCTATCCAGAGCCACATCTTTTCTCTTTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTCCCATCTCCCTTCCTATCCAGAGCCACATCTTTTCTCTTTCTC  800

seq1  CTTAGAAACAAACAGGCATCTAAGGAAGAATAAGATGAAATAAGATAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAAACAAACAGGCATCTAAGGAAGAATAAGATGAAATAAGATAATG  850

seq1  TAAATCCAGACAGGTCAGAAGAGGACAAAACAAAGACACAGAAAAAAAAA  900
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TAAATCCAGACAGGTCAGAAGAGGAC-AAACAAAGACACAGAAAAAAAAA  899

seq1  AAAAACCCTTATAGATGCAGAAGCACAGGAATTCACTAATAACACATAAT  950
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCC-TATAGATGCAGAAGCACAGGAATTCACTAATAACACATAAT  948

seq1  TGAAGCCATAATAAATTTTCAAAAAACTTGTGAAGTTTCAAAAGATGTCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCCATAATAAATTTTCAAAAAACTTGTGAAGTTTCAAAAGATGTCC  998

seq1  TAACACAACATTATGAGACCAAGAACTTCCAAAAACGCTGTTGAGTTTGT  1050
      | |||||||| ||||||||||   |||||  ||||||||| |||| ||||
seq2  T-ACACAACA-TATGAGACCA--GACTTC--AAAACGCTG-TGAG-TTGT  1040

seq1  TCTGTGTTGGTCATTTACTGCTGGGCATGGGCCTACTTACTGTTAA-GAG  1099
      || ||| |||||| |||||||||||||||||||||||||||||||| |||
seq2  TC-GTG-TGGTCA-TTACTGCTGGGCATGGGCCTACTTACTGTTAAGGAG  1087

seq1  TGGTTTG  1106
      |||||||
seq2  TGGTTTG  1094