BAC Information

Click to search

BAC

Clone NameB6Ng01-080B23
Chromosome3 (Build37)
Map Location 157,182,361 - 157,183,027
singlet/doubletsinglet
Overlap genenone
Upstream gene4930570G19Rik, Negr1, LOC100041152, LOC668853, LOC546818
Downstream geneZranb2, Ptger3, LOC433686, LOC624684, Cth, Ankrd13c, Sfrs11, Lrrc40, Lrrc7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080B23.b
ACCDH895347
length668
definitionDH895347|Mus musculus domesticus DNA, BAC clone: B6Ng01-080B23, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctatccgtttcgattgaacaaaactgaatctttgatagtagttga
accttgaaagagggtgacaagaatgctggttctaaacctttgtcagcgtg
aatagcatatgagtgcccagaactacacatctgttagggggatcttgtgc
ttctgtcagcagaaaattgcaaaaaacttcatgaacccatgcacttaaaa
tgtttggacgtattttttaaatggacttccacaaaacccttctgttttat
taacccattataatcacctgctctctgtttgatggatatcaaaataaaaa
ctctttacatgtaaaaaatggataactttagaagaatgaattggatgaga
aatatgtcaagccctggtgccctgataaaatagggcacagtgaagatttg
ttgctgaagggtgtaacaatatgctcagttaaacagacagtgtgtaacag
tctggtgctgtctcagagggcattggcagtgttctgttctgggatcaggg
caatcctaacacctgtaaatccacataacaagatgctccatcctcgagct
tgtatttttaagagtactttttgtcttggttttttgtttttctttcatat
atatatatatatatatatatatacatatatatatatatatatacatacat
atatatatatgtgtgtgt
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_157182361_157183027
seq2: B6Ng01-080B23.b_44_711

seq1  GAATTCTATCCTTTTCAATTGAACAAAACTGAATCTTTTTTAGTAGTTGA  50
      ||||||||||| |||| |||||||||||||||||||||  ||||||||||
seq2  GAATTCTATCCGTTTCGATTGAACAAAACTGAATCTTTGATAGTAGTTGA  50

seq1  CCCTTGAAAGATGGTGAGAAGAATGCTGGTTCTAAACCTTTGTCAGCGTG  100
       |||||||||| ||||| ||||||||||||||||||||||||||||||||
seq2  ACCTTGAAAGAGGGTGACAAGAATGCTGGTTCTAAACCTTTGTCAGCGTG  100

seq1  AATAGCATATGAGTGCCCAGAACTACACATCTGTTAGGGGGATCTTGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCATATGAGTGCCCAGAACTACACATCTGTTAGGGGGATCTTGTGC  150

seq1  ATCTGTCACCAGGAAATTGGAACAAACTTCATGAACCTATGCACTTAAAA  200
       ||||||| ||| |||||| || |||||||||||||| ||||||||||||
seq2  TTCTGTCAGCAGAAAATTGCAAAAAACTTCATGAACCCATGCACTTAAAA  200

seq1  TGTTATGATGTATTTTTAAAATGGACTTCCACAGAAGCCTTTAATTTTAT  250
      ||||  || |||||||| ||||||||||||||| || ||||   ||||||
seq2  TGTTTGGACGTATTTTTTAAATGGACTTCCACAAAACCCTTCTGTTTTAT  250

seq1  TAAGTAATTATAAGCACATAAGCTCTGTTTGATGGCTCTCAAAATATAAA  300
      |||   ||||||| ||| |   ||||||||||||| | |||||||| |||
seq2  TAACCCATTATAATCACCTGCTCTCTGTTTGATGGATATCAAAATAAAAA  300

seq1  CACATTTCATGTCAAAATTGTATCACTTTTGATGGTTTAATTGTGTGAGA  350
      | | || ||||| |||| || || ||||| || |  | |||||  |||||
seq2  CTCTTTACATGTAAAAAATGGATAACTTTAGAAGAATGAATTGGATGAGA  350

seq1  AATCTGTCAGGCCCTGGTGCCCTGATAAAATAGGGCACAGTGAAGATTTG  400
      ||| ||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTCAAGCCCTGGTGCCCTGATAAAATAGGGCACAGTGAAGATTTG  400

seq1  TTGCTGAAGGGTGTAACAATATGCTCAGTTAAACAGACAGTGTGTAACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGAAGGGTGTAACAATATGCTCAGTTAAACAGACAGTGTGTAACAG  450

seq1  TCTGGTGCTGTCTCAGAGGGCATTGGCAGTGTTCTGTTCTGGGATCAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTGCTGTCTCAGAGGGCATTGGCAGTGTTCTGTTCTGGGATCAGGG  500

seq1  CAATCCTAACACCTGTAAATCCACATAACAAGATGCTCCATCCTCGAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCTAACACCTGTAAATCCACATAACAAGATGCTCCATCCTCGAGCT  550

seq1  TGTA-TTTTAAGAGTACTTTTTGTCTTGGTTTTTTGTTTTTCTTTCATAT  599
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTTTAAGAGTACTTTTTGTCTTGGTTTTTTGTTTTTCTTTCATAT  600

seq1  ATATATATATATATATATATATACATATATATATATATATATACATACAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATACATATATATATATATATATACATACAT  650

seq1  ATATATATATGTGTGTGT  667
      ||||||||||||||||||
seq2  ATATATATATGTGTGTGT  668