BAC Information

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BAC

Clone NameB6Ng01-080C02
Chromosome3 (Build37)10 (Build37)
Map Location 41,059,165 - 41,059,73722,352,866 - 22,353,359
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080C02.bB6Ng01-080C02.g
ACCDH895352DH895353
length1,011659
definitionDH895352|Mus musculus domesticus DNA, BAC clone: B6Ng01-080C02, 5' end.DH895353|Mus musculus domesticus DNA, BAC clone: B6Ng01-080C02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,165 - 41,059,737)(22,352,866 - 22,353,359)
sequence
gaattcttagtttagctctgagccccatttttaatggggttatttgactt
tctagagtccaccttcttttggtctttatatatattggatattagtcccc
tatctgatttaggataggtaaagatcctttcccaatttgttggtggcctt
cttttcttattcatggtgtcttttgccttgcagaagctttgcaattttat
gaggtcccatttgttgattctcgatcttacagcacaagccattgctgttc
tattcaggaattattcccctgtgcctatatcttcgagacttttccccatc
ttctcctctataagtttcagtgtctctggttttatgtgtaattccttaat
ccacttagatttgaccttagtacaaggagataggaatggatcaatttgca
ttcttctacatgataactgccacttgtgccagcaccatttgttgaaaatg
ctgtcttttttccactggatggatttagctcccttgtcaaagatcaagtg
accataggtgtatgagttcaattctgggtcttcgattctattccattggt
ctacttgtctgtcgctataacagtcagctattggatggttcacagggccc
ccagtggaggatctggaggaagtacccagggagctgggcggatctacaac
tctataggtggaacaacaatatgaactaaccagtattccccgagagcttg
tatctctagctgcatatgtatcagtggaaagagaggcccattggtcgtgc
agactttatatgcttcagtacaggggaacgccagggccaagagatgggag
tgggtgggtgaggagtggcctgtttccctgtgtcagacctcagggttgaa
gacgctgctgctcaactggatgaattaaatgcagtgggttaattggggtc
ttggggtagcagggccaggtggcagagacgttgatcctagtattataatg
gggtggcgtagacatgcagtgtgcttactgacctatgtggtgagcacaga
acagaggaatt
gaattcaataggataggcttgtgggacatcaatgggaggagaggcctttg
gtcctgtgaagactccatgcctcagtgtaggggatttccaggatagggaa
gtgggaggaagccaggaggaaacaccctcatagaagcagggggaagggga
gggaatgggggattcatttttaaaaagtcacaagaataaacctcaagtcc
tgtccttaactggattgggtacatacacagtctgttatatttgaatatgt
tgcttttgttccaaacacattgtctacacagctgtctctgcttaaacaaa
acaaaacaaaaacaaaaacaaaaatacaaaaacaaataaaataaccccca
tttcaccctggctttcctagaataaaaaaaataaaaccagccttcctgtg
tcttggggttccctattctcttccttttccctttcttcccctcccccatc
ccttcctcctttctctttctttcccctttgggacagggtctcactatgtg
acttaggctaacctggagcttgggattcttcctctcctagtcctgactgc
tgggatttcccatgtgcagctctgtgtgtaacttgagggttatgtgttta
taaaaagataaagagaggaggggctatgttttggtgggcgtgtggtgagg
tgtgggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059165_41059737
seq2: B6Ng01-080C02.b_46_618 (reverse)

seq1  ACTGGTATAGTGACAGACAAGCAGACCAATGGAATAGAATTGAAGACTCA  50
      |||| ||||| |||||||||| |||||||||||||||||| |||||| ||
seq2  ACTGTTATAGCGACAGACAAGTAGACCAATGGAATAGAATCGAAGACCCA  50

seq1  GAAACGAATCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAA  100
      |||  |||  || |||||||||||||||||||||| ||||||||||||||
seq2  GAATTGAACTCATACACCTATGGTCACTTGATCTTTGACAAGGGAGCTAA  100

seq1  AACCATCCAGTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACA  150
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCCAGTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACA  150

seq1  ACTGGTTGTTATCATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCT  200
      | |||  |||||||||||||||||||| |||||||||| |||||||||||
seq2  AGTGGCAGTTATCATGTAGAAGAATGCAAATTGATCCATTCCTATCTCCT  200

seq1  TGTACTAAGGTCAAATCTAAGTGGATCAAGGAACGCCACATAAAACCAGA  250
      |||||||||||||||||||||||||| ||||||   ||||||||||||||
seq2  TGTACTAAGGTCAAATCTAAGTGGATTAAGGAATTACACATAAAACCAGA  250

seq1  GACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGG  300
      ||||||||||||||||||||||||  |||||||||| || |||||||| |
seq2  GACACTGAAACTTATAGAGGAGAAGATGGGGAAAAGTCTCGAAGATATAG  300

seq1  TCACAGGGGAAAAATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGA  350
       |||||||||| |||||||| |||||||||||||||||||||||||||||
seq2  GCACAGGGGAATAATTCCTGAATAGAACAGCAATGGCTTGTGCTGTAAGA  350

seq1  TTGAGAATAGACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGC  400
      | ||||||  |||||||||||||||| ||| |||||||||||||||||||
seq2  TCGAGAATCAACAAATGGGACCTCATAAAATTGCAAAGCTTCTGCAAGGC  400

seq1  AAAAGACACCGTCAATAAGACAAAAAGG-CACCAACAGATTGGGAAAGGA  449
      |||||||||| | ||||||| || |||| |||||||| ||||||||||||
seq2  AAAAGACACCATGAATAAGAAAAGAAGGCCACCAACAAATTGGGAAAGGA  450

seq1  TCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAATATATATCAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAATATATATAAA  500

seq1  GAACTCAAGAAGGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATG  549
      || |  ||||||||||| || ||||| ||||||||||||||| |||||||
seq2  GACCAAAAGAAGGTGGACTCTAGAAAGTCAAATAACCCCATT-AAAAATG  549

seq1  GGGCTCAGAGCTAAACAAAGAATT  573
      |||||||||||||||| |||||||
seq2  GGGCTCAGAGCTAAACTAAGAATT  573

seq1: chr10_22352866_22353359
seq2: B6Ng01-080C02.g_233_726

seq1  CATTTTTAAAAAGTCACAAGAATAAACCTCAAGTCCTGTCCTTAACTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTAAAAAGTCACAAGAATAAACCTCAAGTCCTGTCCTTAACTGGA  50

seq1  TTGGGTACATACACAGTCTGTTATATTTGAATATGTTGCTTTTGTTCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTACATACACAGTCTGTTATATTTGAATATGTTGCTTTTGTTCCAA  100

seq1  ACACATTGTCTACACAGCTGTCTCTGCTTAAACAAAACAAAACAAAAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTGTCTACACAGCTGTCTCTGCTTAAACAAAACAAAACAAAAACA  150

seq1  AAAACAAAAATACAAAAACAAATAAAATAACCCCCATTTCACCCTGGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAATACAAAAACAAATAAAATAACCCCCATTTCACCCTGGCTT  200

seq1  TCCTAGAATAAAAAAAATAAAACCAGCCTTCCTGTGTCTTGGGGTTCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGAATAAAAAAAATAAAACCAGCCTTCCTGTGTCTTGGGGTTCCCT  250

seq1  ATTCTCTTCCTTTTCCCTTTCTTCCCCTCCCCCATCCCTTCCTCCTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTTCCTTTTCCCTTTCTTCCCCTCCCCCATCCCTTCCTCCTTTCT  300

seq1  CTTTCTTTCCCCTTTGGGACAGGGTCTCACTATGTGACTTAGGCTAACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCCCCTTTGGGACAGGGTCTCACTATGTGACTTAGGCTAACCT  350

seq1  GGAGCTTGGGATTCTTCCTCTCCTAGTCCTGACTGCTGGGATTTCCCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTTGGGATTCTTCCTCTCCTAGTCCTGACTGCTGGGATTTCCCATG  400

seq1  TGCAGCTCTGTGTGTAACTTGAGGGTTATGTGTTTATAAAAAGATAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCTCTGTGTGTAACTTGAGGGTTATGTGTTTATAAAAAGATAAAGA  450

seq1  GAGGAGGGGCTATGTTTTGGTGGGCGTGTGGTGAGGTGTGGGGG  494
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGGGCTATGTTTTGGTGGGCGTGTGGTGAGGTGTGGGGG  494