BAC Information

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BAC

Clone NameB6Ng01-080C08
Chromosome3 (Build37)6 (Build37)
Map Location 21,070,431 - 21,071,65785,609,872 - 85,610,436
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCpa3, EG664965, LOC100040283, Cpb1, Agtr1b, EG665094
Downstream geneLOC100040325, 7530428D23Rik, LOC100039465, LOC100040353, Tbl1xr1, LOC545506
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080C08.bB6Ng01-080C08.g
ACCDH895364DH895365
length1,194822
definitionDH895364|Mus musculus domesticus DNA, BAC clone: B6Ng01-080C08, 5' end.DH895365|Mus musculus domesticus DNA, BAC clone: B6Ng01-080C08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(21,070,431 - 21,071,657)(85,609,872 - 85,610,436)
sequence
gaattcaagaaagtctgtttctcggggccaacctctgcattactaggcag
ccaagtcaaaaacaagggagcagtcagatctctcccagttaacagtgtct
tcagctacagacaactgaacagtgactccgcatgttacttccgtatagca
agtccataactggatgcatcaaggaagtcattacagaataaagaggccta
taacttctcatccactctcattagactgaactcttggtgctttgattata
aggtacaattctcttcagtggtcatcaagtcatcccactaacaagaagtg
atgaaggataaagggcaaaggtgagataatagtgggctgtggcagacatt
aatatgcagtgttttatgcttcagtgacaggctagaaatacatggataca
aaagaccctggattccatccttaactctgcataaatagggtgtggtagtg
gtgtattcctgttatcccagcacagaggaagtaaaggcaggaagagtaag
gatggggactttaaaattatctgttactagatagtaaatctgaagcaagc
ctgagctgataaagatccagccttaaaattaggcacataaaagtttatct
ggccagctttagcaagaacataacagctgctctagtactgtcactcaatg
aattccaattattcattaggactagaatcctacaagtggtgcctgaagga
ttaatgtagactttagatttaatgccttcacacatcagacaaaatttggg
ttctgttaaagaagaaaaatttggggttggtagagagcagatactgcata
gagtaaaagactgcaacatgagaacagaagtcaattaaatcaagagatac
ataatgaggcctgaaaataagtgattccttatgtccaatagaaaaaaatt
atttggcaaccaaataaaaggatcatgagggaaagatcactcacagctta
gaacactttatattaaccatcctattatctaaatatttggacatgagaac
atatcctactggcagctattctatctatgagattctgtgaggaccccact
tgagatgctgcatacaacatggagatcacttagactaaagaacttgcttc
ggtgatgataaacatatctacatagtcagaacagtcttgatcagagtagc
ttgctctggctagacatgcagcagctcatccagagatagaaata
gaattcctgatctttctaagacttttatcatgaatgggtgttggattttg
tcgaatgctttctcagcatctaacaagatgatcatgtggtttttgtcttt
gagtttgtttatatactggattacgtcgatggatttccatatattggacc
atccctgcatccctaggatgaaacctacttggttaggatggatgattgtt
ttgatgtgttcttggattcggttagcaagaactttattgaggatttttgc
atcgatattcataagggaaattggtctgaagttctctatctttgttgggt
ctttttgtggtttaggtatcacagtaattgtggcttcatagattgagttt
ggtagagtaccttctgcttctattttgtggaatagtttgtgaagaactgg
gattagacctttgaaggtctgatagaactctgcactaaacccatctggtc
ctgggctttttttttggttgggagactattaatgactgcttctatttctt
taggggatataggactgtttagatcattaacctgatcttgatttaacttt
ggtacctggtatctgtctagaaacttgtctatttgatccaggttctccat
tttgttgagtatagccttttatagaaggatctgatggtgttttggatttt
cttcaggatctgttgttatgtctcccctttgatttctgattttgttaatt
aggatgctgtccctgtgccctctagtgagtctggctcagggtttatctat
cttgttgattttctcaagagccagctcctcgattggttgattcttttgaa
tagttctttttgtttccacttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_21070431_21071657
seq2: B6Ng01-080C08.b_46_1239

seq1  GAATTCAAGAAAGTCTGTTTCTCGGGGCCAACCTCTGCATTACTAGGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAAAGTCTGTTTCTCGGGGCCAACCTCTGCATTACTAGGCAG  50

seq1  CCAAGTCAAAAACAAGGGAGCAGTCAGATCTCTCCCAGTTAACAGTGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTCAAAAACAAGGGAGCAGTCAGATCTCTCCCAGTTAACAGTGTCT  100

seq1  TCAGCTACAGACAACTGAACAGTGACTCCGCATGTTACTTCCGTATAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTACAGACAACTGAACAGTGACTCCGCATGTTACTTCCGTATAGCA  150

seq1  AGTCCATAACTGGATGCATCAAGGAAGTCATTACAGAATAAAGAGGCCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCATAACTGGATGCATCAAGGAAGTCATTACAGAATAAAGAGGCCTA  200

seq1  TAACTTCTCATCCACTCTCATTAGACTGAACTCTTGGTGCTTTGATTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTCTCATCCACTCTCATTAGACTGAACTCTTGGTGCTTTGATTATA  250

seq1  AGGTACAATTCTCTTCAGTGGTCATCAAGTCATCCCACTAACAAGAAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACAATTCTCTTCAGTGGTCATCAAGTCATCCCACTAACAAGAAGTG  300

seq1  ATGAAGGATAAAGGGCAAAGGTGAGATAATAGTGGGCTGTGGCAGACATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGATAAAGGGCAAAGGTGAGATAATAGTGGGCTGTGGCAGACATT  350

seq1  AATATGCAGTGTTTTATGCTTCAGTGACAGGCTAGAAATACATGGATACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGCAGTGTTTTATGCTTCAGTGACAGGCTAGAAATACATGGATACA  400

seq1  AAAGACCCTGGATTCCATCCTTAACTCTGCATAAATAGGGTGTGGTAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACCCTGGATTCCATCCTTAACTCTGCATAAATAGGGTGTGGTAGTG  450

seq1  GTGTATTCCTGTTATCCCAGCACAGAGGAAGTAAAGGCAGGAAGAGTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTCCTGTTATCCCAGCACAGAGGAAGTAAAGGCAGGAAGAGTAAG  500

seq1  GATGGGGACTTTAAAATTATCTGTTACTAGATAGTAAATCTGAAGCAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGGACTTTAAAATTATCTGTTACTAGATAGTAAATCTGAAGCAAGC  550

seq1  CTGAGCTGATAAAGATCCAGCCTTAAAATTAGGCACATAAAAGTTTATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTGATAAAGATCCAGCCTTAAAATTAGGCACATAAAAGTTTATCT  600

seq1  GGCCAGCTTTAGCAAGAACATAACAGCTGCTCTAGTACTGTCACTCAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCTTTAGCAAGAACATAACAGCTGCTCTAGTACTGTCACTCAATG  650

seq1  AATTCCAATTATTCATTAGGACTAGAATCCTACAAGTGGTGCCTGAAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCAATTATTCATTAGGACTAGAATCCTACAAGTGGTGCCTGAAGGA  700

seq1  TTAATGTAGACTTTAGATTTAATGCCTTCACACATCAGACAAAATTTGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTAGACTTTAGATTTAATGCCTTCACACATCAGACAAAATTTGGG  750

seq1  TTCTGTTAAAGAAGAAAAATTTGGGGTTGGTAGAGAGCAGATACTGCATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTAAAGAAGAAAAATTTGGGGTTGGTAGAGAGCAGATACTGCATA  800

seq1  GAGTAAAAGACTGCAACATGAGAACAGAAGTCAATTAAATCAAGAGATAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAAAGACTGCAACATGAGAACAGAAGTCAATTAAATCAAGAGATAC  850

seq1  ATAATGAGGCCTGAAAATAAGTGATTCCTTATGTCCAATAGAAAAAAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGAGGCCTGAAAATAAGTGATTCCTTATGTCCAATAGAAAAAAATT  900

seq1  ATTTGGCAACCAAATAAAAGGATCATGAGGGAAAAGATCACTCAACAGCT  950
      ||||||||||||||||||||||||||||||| ||||||||||| ||||||
seq2  ATTTGGCAACCAAATAAAAGGATCATGAGGG-AAAGATCACTC-ACAGCT  948

seq1  TAGGAACACTTTATATTAACCATCCTATTATTCTAAATATTTGGACAATG  1000
      || ||||||||||||||||||||||||||| ||||||||||||||| |||
seq2  TA-GAACACTTTATATTAACCATCCTATTA-TCTAAATATTTGGAC-ATG  995

seq1  AGAAACAATATCCTACTGGCAGCTATTCTAATCTATGAGATTCTGTGAAG  1050
      ||||   |||||||||||||||||||||| ||||||||||||||||| ||
seq2  AGAA--CATATCCTACTGGCAGCTATTCT-ATCTATGAGATTCTGTG-AG  1041

seq1  GAACCCCCACTTGAGATGCTGCAATACAACATGGAGATCCACTTAGACCT  1100
      ||  |||||||||||||||||| ||||||||||||||| |||||||||  
seq2  GA--CCCCACTTGAGATGCTGC-ATACAACATGGAGAT-CACTTAGAC--  1085

seq1  AAAAGAACCTTGGCCTTCGGGTGATGATAAACATATCTACATAGTCAGAA  1150
       |||||| ||||  |||| |||||||||||||||||||||||||||||||
seq2  TAAAGAA-CTTG--CTTC-GGTGATGATAAACATATCTACATAGTCAGAA  1131

seq1  CAGTCCTAGATCAAGAGTAGCTTTGCTCTGCCTAGACAATGCACAGCAAG  1200
      |||| || |||| |||||||| |||||||| |||||| |||  |||| ||
seq2  CAGT-CTTGATC-AGAGTAGC-TTGCTCTGGCTAGAC-ATG--CAGC-AG  1174

seq1  CTCATCCAGAGGAATTTTAGAGAAATA  1227
      |||||||||||       | |||||||
seq2  CTCATCCAGAG-------ATAGAAATA  1194

seq1: chr6_85609872_85610436
seq2: B6Ng01-080C08.g_327_891 (reverse)

seq1  CAAGTGGAAAC---AAGAACTATTC-AAAGAATCAACCAATCGAGGAGCT  46
      |||||||||||   ||||||||||| ||||||||||||||||||||||||
seq2  CAAGTGGAAACAAAAAGAACTATTCAAAAGAATCAACCAATCGAGGAGCT  50

seq1  GGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACT  96
      || || |||||||||||||||||||||||||||||| ||| |||||||||
seq2  GGCTC-TTGAGAAAATCAACAAGATAGATAAACCCTGAGCCAGACTCACT  99

seq1  AGAGGGCACAGGGAAAGCATCCTAATTAACAAAATCAGAAATGAAAAGGG  146
      |||||||||||||| ||||||||||||||||||||||||||| ||| |||
seq2  AGAGGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATCAAAGGGG  149

seq1  AGATATAACAACAGATCCTGAAG-AAATCCAAAACACCATCAGATCCTTC  195
      ||| ||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGACATAACAACAGATCCTGAAGAAAATCCAAAACACCATCAGATCCTTC  199

seq1  TACAAAAGGCTATACTCATCAAAACTGGAGAACCTGGATGAAATGGACAC  245
      || ||||||||||||||| ||||| |||||||||||||| |||| |||| 
seq2  TATAAAAGGCTATACTCAACAAAA-TGGAGAACCTGGATCAAATAGACAA  248

seq1  GTTTCTAGACAGATACCAGGTACCAAAGTTAAATCAAGATCAGGTTAATG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTAGACAGATACCAGGTACCAAAGTTAAATCAAGATCAGGTTAATG  298

seq1  ATCTAAACAGTCCTATATCCCCTAAAGAAATAGAAGCAGTCATTAATAGT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAACAGTCCTATATCCCCTAAAGAAATAGAAGCAGTCATTAATAGT  348

seq1  CTCCCAACCAAAAAAAAAGCCCAGGACCAAATGGGTTTAGTGCAGAGTTC  395
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CTCCCAACCAAAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTC  398

seq1  TATCAGACCTTCAAAGAAGATCTAATCCCAGTTCTTCACAAACTATTCCA  445
      |||||||||||||   ||| ||||||||||||||||||||||||||||||
seq2  TATCAGACCTTCA---AAGGTCTAATCCCAGTTCTTCACAAACTATTCCA  445

seq1  CAAAATAGAAACAGAAGGTACTCTACCCAACTCATTCTATGAAGCCACAA  495
      |||||||||| |||||||||||||||| |||||| |||||||||||||||
seq2  CAAAATAGAAGCAGAAGGTACTCTACCAAACTCAATCTATGAAGCCACAA  495

seq1  TTACTCTGATACCTAAACCACAAAAAGACCCAACAAAGATAGAGAACTTC  545
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTGATACCTAAACCACAAAAAGACCCAACAAAGATAGAGAACTTC  545

seq1  AGACCAATTTCCCTTATGAA  565
      ||||||||||||||||||||
seq2  AGACCAATTTCCCTTATGAA  565