BAC Information

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BAC

Clone NameB6Ng01-080D01
Chromosome3 (Build37)
Map Location 46,459,176 - 46,580,196
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC433580, LOC671801, EG241989
Downstream geneLOC545517, LOC383849, LOC383850, LOC100039426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080D01.bB6Ng01-080D01.g
ACCDH895396DH895397
length1,1891,129
definitionDH895396|Mus musculus domesticus DNA, BAC clone: B6Ng01-080D01, 5' end.DH895397|Mus musculus domesticus DNA, BAC clone: B6Ng01-080D01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,578,979 - 46,580,196)(46,459,176 - 46,460,254)
sequence
gaattctttcattattattgaatgtctgtgcatttgataagttaatagaa
accccatgcaacaatacaggtttcatagctaagaggaggtgatattaaca
tggacagctcacttcaattcttttactatgccctctacaaagcaaagatg
agtcacaatttactccatatactgattcttagtttagttctacaaactag
ttgcatccaaaaataatggtcatacaaattttccatctgtgaatacaagg
ctgtctgcaacctcctatacattttgactttactactaagacttaagata
aacatcaaataaccttggagcaggctttgctaagtttagggatgtcacca
tgattacatctttgaaaacatggcaaaaataaaacatgtttaaaaagatg
ggtaaatctcttcagtccaaaatattaaggaaaaagaaagcaaccaaaat
cccagaattatcgagattattccaagtctagtttctaggttttttattct
ccattcatgacaaatgcttcccttgattcaattttacatggacactaatt
aataattaattaataaagcttcgaatcactgaggtacagtgcacgtgcat
ggttcctgatttatataaggacaagataggaaaagggcaatgagaaaaaa
ttcagctagtcaaagaaaaatagacttttataaaacacggatttgtctta
tctgcaatgcaaataaattattattttggatccatgttgatttgcatcaa
agcagaaagtgcactcgttttgctcagagaaattataggaaaagcatctg
ctatcagatggatagacaacggtaagaatatcaaggacaagagagtgtat
ctcttactccttctcaggaaactgtagaacgtcactgaaactgtttcatg
ataataaggaatataaaactttcagtgttccacacagaggctgcatctct
gcagtcattatacttctgagctccaccaaactatctcccgaacagttgca
gtgagataatggagactcactttgagaaaagaagttcttagagtagcctg
gagccataacttagaggcagatagtagcattttgtctccatagttatact
ttataggtgatttcacctggatttgctcctgctagctaattctagatcct
tcaactgtaccggaattgttactaggaatcatgccattt
gaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaacactgagat
tccacttcactccagtcagaatggctaagatcaaaaactcaggtgacagc
agatgctggcgaggatgtggagaaaggggaacactcctccattgttggtg
ggattgcaaacttgtacaaccactctggaaatcagtctgtcggttcctca
gaaaattggacatagtactaccggacgaccccgcaatacctctcctgggc
atatatccagaagatgtcccaaccggtaagaagaacacatgctccactat
gttcatagcagccttgtttataatagccaggagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gaatactactcagctattaaaaaaatgaatttatgaaattcctaggcaaa
tggatggacctggagggtatcatcctgagtgaagtaacccaatcacaaag
gaacttgtactaaaaatttttcttatgttaagagctgtatcattttagat
cagggattcatgattctactagaatgttatttttgatgtgttaatcagga
aaataaaatgcaagtaaacaaaataaataaataaataaataaaatcttgc
tatattgtagagataaacacactagaaatttcgtactatcttctaatctg
agtttgagttgtgtgttccgtctgattagccttccattttgagtagtaca
taaaaatttaaactagctaaacacagaccacaaaaaccctaaaaagagat
gtaccgtttatagtatcacgtgatatattttctcttttctagtcctagta
gttaattattcaattgtaatattaaaatccagccatataaatggtggttt
ttagagtatgaactctttttatcgttctgcactctgtctctttgtcttgc
agctagtttactctctcactttaaaaaaaaaaaagagacaccatcgttag
ccatgttgatgaaacaagacaaaatgggaatagaaacggatactcaaaat
aagtagtttccagtgctaattaatttaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_46578979_46580196
seq2: B6Ng01-080D01.b_49_1237 (reverse)

seq1  AAATGGCAATGATCCCCTAGTAACAAATCTCGGGTGCACAGGTGTTTGAA  50
      ||||||| |||||  ||||||||||| || ||   | ||||    |||||
seq2  AAATGGC-ATGAT-TCCTAGTAACAATTC-CG---GTACAG----TTGAA  40

seq1  GGAATCCTAGATATAGCTAAGCAGGAGCCAAATTCCAGGTGAAATCACCT  100
      |||   |||||  ||||| |||||||||  || |||||||||||||||||
seq2  GGA--TCTAGAATTAGCT-AGCAGGAGC--AAATCCAGGTGAAATCACCT  85

seq1  ATAAAGGTTATAACTAT-GAGACCAAAAATTGCCTACTAATCTTGCTTCT  149
      ||||||  ||||||||| |||||  |||||   ||||| ||| ||| |||
seq2  ATAAAG--TATAACTATGGAGAC--AAAAT--GCTACT-ATC-TGCCTCT  127

seq1  AAAGGTTTATGGCTCAAGGCTACTCTTAAGAACCTTCTTTCTCAAAGTGA  199
      ||    ||||||||| ||||||||| ||||||| |  |||||||||||||
seq2  AA---GTTATGGCTCCAGGCTACTC-TAAGAACTTCTTTTCTCAAAGTGA  173

seq1  GTCTCCATTATCCTCCACTGCAACTGTTCGGGAGATAGTTTGGTGGAGCT  249
      ||||||||||||   |||||||||||||||||||||||||||||||||||
seq2  GTCTCCATTATC--TCACTGCAACTGTTCGGGAGATAGTTTGGTGGAGCT  221

seq1  CAGAAGTATAATGACTGCAGAGATGCAGCCTCTGTGTGGAACACCTGAAA  299
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CAGAAGTATAATGACTGCAGAGATGCAGCCTCTGTGTGGAACA-CTGAAA  270

seq1  GTTTTATATTCCTTATTATCATGAAACAGTTTCAGTGACGTTCTACAGTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATATTCCTTATTATCATGAAACAGTTTCAGTGACGTTCTACAGTT  320

seq1  TCCTGAGAAGGAGTAAGAGATACACTCTCTTGTCCTTGATATTCTTACCG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGAAGGAGTAAGAGATACACTCTCTTGTCCTTGATATTCTTACCG  370

seq1  TTGTCTATCCATCTGATAGCAGATGCTTTTCCTATAATTTCTCTGAGCAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTATCCATCTGATAGCAGATGCTTTTCCTATAATTTCTCTGAGCAA  420

seq1  AACGAGTGCACTTTCTGCTTTGATGCAAATCAACATGGATCCAAAATAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAGTGCACTTTCTGCTTTGATGCAAATCAACATGGATCCAAAATAAT  470

seq1  AATTTATTTGCATTGCAGATAAGACAAATCCGTGTTTTATAAAAGTCTAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATTTGCATTGCAGATAAGACAAATCCGTGTTTTATAAAAGTCTAT  520

seq1  TTTTCTTTGACTAGCTGAATTTTTTCTCATTGCCCTTTTCCTATCTTGTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTGACTAGCTGAATTTTTTCTCATTGCCCTTTTCCTATCTTGTC  570

seq1  CTTATATAAATCAGGAACCATGCACGTGCACTGTACCTCAGTGATTCGAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATATAAATCAGGAACCATGCACGTGCACTGTACCTCAGTGATTCGAA  620

seq1  GCTTTATTAATTAATTATTAATTAGTGTCCATGTAAAATTGAATCAAGGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTATTAATTAATTATTAATTAGTGTCCATGTAAAATTGAATCAAGGG  670

seq1  AAGCATTTGTCATGAATGGAGAATAAAAAACCTAGAAACTAGACTTGGAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTTGTCATGAATGGAGAATAAAAAACCTAGAAACTAGACTTGGAA  720

seq1  TAATCTCGATAATTCTGGGATTTTGGTTGCTTTCTTTTTCCTTAATATTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTCGATAATTCTGGGATTTTGGTTGCTTTCTTTTTCCTTAATATTT  770

seq1  TGGACTGAAGAGATTTACCCATCTTTTTAAACATGTTTTATTTTTGCCAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTGAAGAGATTTACCCATCTTTTTAAACATGTTTTATTTTTGCCAT  820

seq1  GTTTTCAAAGATGTAATCATGGTGACATCCCTAAACTTAGCAAAGCCTGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCAAAGATGTAATCATGGTGACATCCCTAAACTTAGCAAAGCCTGC  870

seq1  TCCAAGGTTATTTGATGTTTATCTTAAGTCTTAGTAGTAAAGTCAAAATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGGTTATTTGATGTTTATCTTAAGTCTTAGTAGTAAAGTCAAAATG  920

seq1  TATAGGAGGTTGCAGACAGCCTTGTATTCACAGATGGAAAATTTGTATGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGAGGTTGCAGACAGCCTTGTATTCACAGATGGAAAATTTGTATGA  970

seq1  CCATTATTTTTGGATGCAACTAGTTTGTAGAACTAAACTAAGAATCAGTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTATTTTTGGATGCAACTAGTTTGTAGAACTAAACTAAGAATCAGTA  1020

seq1  TATGGAGTAAATTGTGACTCATCTTTGCTTTGTAGAGGGCATAGTAAAAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAGTAAATTGTGACTCATCTTTGCTTTGTAGAGGGCATAGTAAAAG  1070

seq1  AATTGAAGTGAGCTGTCCATGTTAATATCACCTCCTCTTAGCTATGAAAC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAAGTGAGCTGTCCATGTTAATATCACCTCCTCTTAGCTATGAAAC  1120

seq1  CTGTATTGTTGCATGGGGTTTCTATTAACTTATCAAATGCACAGACATTC  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTGTTGCATGGGGTTTCTATTAACTTATCAAATGCACAGACATTC  1170

seq1  AATAATAATGAAAGAATTC  1218
      |||||||||||||||||||
seq2  AATAATAATGAAAGAATTC  1189

seq1: chr3_46459176_46460254
seq2: B6Ng01-080D01.g_126_1194

seq1  TTAATCATCAGGGAAATGCAAATCAAAACAACACTGAGATTCCACTTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCATCAGGGAAATGCAAATCAAAACAACACTGAGATTCCACTTCAC  50

seq1  TCCAGTCAGAATGGCTAAGATCAAAAACTCAGGTGACAGCAGATGCTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTCAGAATGGCTAAGATCAAAAACTCAGGTGACAGCAGATGCTGGC  100

seq1  GAGGATGTGGAGAAAGGGGAACACTCCTCCATTGTTGGTGGGATTGCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATGTGGAGAAAGGGGAACACTCCTCCATTGTTGGTGGGATTGCAAA  150

seq1  CTTGTACAACCACTCTGGAAATCAGTCTGTCGGTTCCTCAGAAAATTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTACAACCACTCTGGAAATCAGTCTGTCGGTTCCTCAGAAAATTGGA  200

seq1  CATAGTACTACCGGACGACCCCGCAATACCTCTCCTGGGCATATATCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTACTACCGGACGACCCCGCAATACCTCTCCTGGGCATATATCCAG  250

seq1  AAGATGTCCCAACCGGTAAGAAGAACACATGCTCCACTATGTTCATAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTCCCAACCGGTAAGAAGAACACATGCTCCACTATGTTCATAGCA  300

seq1  GCCTTGTTTATAATAGCCAGGAGCTGGAAAGAACCCAGATGCCCCTCAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGTTTATAATAGCCAGGAGCTGGAAAGAACCCAGATGCCCCTCAAC  350

seq1  AGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAATACTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAATACTACT  400

seq1  CAGCTATTAAAAAAATGAATTTATGAAATTCCTAGGCAAATGGATGGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTATTAAAAAAATGAATTTATGAAATTCCTAGGCAAATGGATGGACC  450

seq1  TGGAGGGTATCATCCTGAGTGAAGTAACCCAATCACAAAGGAACTTGTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGGTATCATCCTGAGTGAAGTAACCCAATCACAAAGGAACTTGTAC  500

seq1  TAAAAATTTTTCTTATGTTAAGAGCTGTATCATTTTAGATCAGGGATTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATTTTTCTTATGTTAAGAGCTGTATCATTTTAGATCAGGGATTCA  550

seq1  TGATTCTACTAGAATGTTATTTTTGATGTGTTAATCAGGAAAATAAAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTACTAGAATGTTATTTTTGATGTGTTAATCAGGAAAATAAAATG  600

seq1  CAAGTAAACAAAATAAATAAATAAATAAATAAAATCTTGCTATATTGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAAACAAAATAAATAAATAAATAAATAAAATCTTGCTATATTGTAG  650

seq1  AGATAAACACACTAGAAATTTCGTACTATCTTCTAATCTGAGTTTGAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAACACACTAGAAATTTCGTACTATCTTCTAATCTGAGTTTGAGTT  700

seq1  GTGTGTTCCGTCTGATTAGCCTTCCATTTTGAGTAGTACATAAAAATTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTCCGTCTGATTAGCCTTCCATTTTGAGTAGTACATAAAAATTTA  750

seq1  AACTAGCTAAACACAGACCACAAAAACCCTAAAAAGAGATGTACCGTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGCTAAACACAGACCACAAAAACCCTAAAAAGAGATGTACCGTTTA  800

seq1  TAGTATCACGTGATATATTTTCTCTTTTCTAGTCCTAGTAGTTAATTATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATCACGTGATATATTTTCTCTTTTCTAGTCCTAGTAGTTAATTATT  850

seq1  CAATTGTAATATTAAAATCCAGCCATATAAATGGTGGTTTTTAGAGTATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGTAATATTAAAATCCAGCCATATAAATGGTGGTTTTTAGAGTATG  900

seq1  AACTCTTTTTTATCGTTCTGCAACCTCTGTTCCTCTTTGTCTTGGCAGCT  950
      ||||| ||||||||||||||||  ||||||  ||||||||||| ||||||
seq2  AACTC-TTTTTATCGTTCTGCA--CTCTGT--CTCTTTGTCTT-GCAGCT  944

seq1  AGTTTACTCTCTCACTTTAAAAAAAAAAAAGAGACA-CATCG-TAGCAAT  998
      |||||||||||||||||||||||||||||||||||| ||||| |||| ||
seq2  AGTTTACTCTCTCACTTTAAAAAAAAAAAAGAGACACCATCGTTAGCCAT  994

seq1  GTTTGATGAAACAAGACAAAAAGGGAAATAGAGACAGGATACTCAAAAAT  1048
      | ||||||||||||||||||| ||| |||||| || ||||||||||||  
seq2  G-TTGATGAAACAAGACAAAATGGG-AATAGAAAC-GGATACTCAAAA--  1039

seq1  TAAAGTAGTTT-CAGTGCTAATTAATTATAAT  1079
        ||||||||| ||||||||||||||| ||||
seq2  -TAAGTAGTTTCCAGTGCTAATTAATT-TAAT  1069