BAC Information

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BAC

Clone NameB6Ng01-080D12
Chromosome3 (Build37)
Map Location 149,565,368 - 149,566,524
singlet/doubletsinglet
Overlap genenone
Upstream geneLphn2, LOC100040368, LOC668893, EG381483, LOC100040620
Downstream geneLOC100040633, LOC100040455, LOC100040463, LOC623554
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080D12.bB6Ng01-080D12.g
ACCDH895418DH895419
length1,1461,175
definitionDH895418|Mus musculus domesticus DNA, BAC clone: B6Ng01-080D12, 5' end.DH895419|Mus musculus domesticus DNA, BAC clone: B6Ng01-080D12, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccctcttaacctctttccctcccttccccttctctcatttatata
cagttcttagtttccttatttttttttatcatggcagaagccttatccag
tttgggaaaggactattatccataacaaactggtgctcacgaaaatatcc
aaatggtttcagctcctaccaccaatttggaagtgtccaagcaaattgat
tagagattttgaatgcttaatatttattgtaaatcatacaagacaataca
ggtttcacacactatgggactagccctggggctctatggtatccagtttc
ttccttcacagtttagaaataatttttcatttttattaaaaatattcatt
gttagctgggcggtggtgacacatgcctttaatcccagcacttgggaggc
agaggcaggtggatttctgagtttgaggccagcttggtctacaaagtgag
ttctgggacagccaggattatacagagaaaacctacctcaaaaaacaaaa
aacaaaacaaacaaaacaaaaaaatgttcattgttaaatgcactactatc
ttcttcagaatatgcacttaacatagaagggcactgcatcaaatgttcat
atctgaataaaaataaataaacctagaaaccagaaaaaggtggggaagag
ttggaaagaggagcctggtggcctgcatgtgagacctcaagatttgcatg
tctttaagtaagtctgattccctgttgatctgacacttctgatcccacta
tccttgtcaggcaaaggtaaattttaccatcagaagtttaccttggcttt
aaatttcctacagtatatttttcatatagagcgaaattttgttctaatgg
ctggtgaccattgataataaggccatgcaggctgggcttgtcttctaaag
tggggggaacaatgaaatccaactgaacttctatctcatctaaaggagca
ccttgagctttccatttcttctaaggggacaagtaaatttacaattgcaa
cctgaacaatttgactgctactgttctgtgagctcctttaacagccctgg
gggagttagtctaccttgcaacctgaggcaatatctcagagattttatga
attcttttgtcattgtgtaccacttttgtctttagaaagcagttaa
gaattcccaactgaggaataccaaacagctgagaagcacctaaagaaggt
tcaacaaccttagtcatcagggaaattcaaatcaaaaaactctaagattc
cacctcacaccagttagaatggctaagatcaaaaactcaggtgacagcag
atgctggtgaagatgtgcagaaagaggaacattcctccattgctggtggg
atggcaagctggaacaaccactctagaaatcagtctggcggttcctcaga
aaattggacatagtactatctgaggacccagatataccactcctgggtat
atacccaaaaggtgctccaacttataacaaggaaacatgctccactatat
tcatagcagccttatttataatagccagaagctggaaagaacccagatgt
cctttcaacagaggaatggatatagaaaatgtggtacatttccacaatgg
agtattaataaggtattaaaaacaatgaactcatgaaattcttaggcaaa
tggatggaactagaaaatatcatcctgagtgaggtaacccagtcagaaaa
gaacacacactcattgataagtggatattagccccaaagctcagaatacc
caagatataattcacagaccacatgaagctcaagaagaaggaagactaac
atgtggatgcttcagtcctttttagaagggagaacaaaatactcaaggga
ggaaatatggaaacaaagggaggagcagggattgcaagaaatgccactca
gggactgcctcacctggggatccatcccatatacagacacctaacacaga
cactattgtggataacgagaagtgcttgctgacaggagtttgatttagct
gtctccttcgaagctctgccagagcctgaaaatgcagaggcagatgctta
cagccaatcacttggattgagcacaggttccccaatgaaaggagttaaga
gaaattactgaaggagcttgaaagggttgtaacccatagaaaggaaaaca
ttatgtaccaaccagtacacccaaagctctaggactaacagcaacaaaaa
ttatatatgctgggacccatgctcagctgctatgtagcgagatgcccttg
tgacatcaatgtgaggaggagcctggtccgagaaagctgtaggcaggttg
ggagagcagggtgtgggaagggtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_149565368_149566524
seq2: B6Ng01-080D12.b_37_1182 (reverse)

seq1  TTAACTGCCTTTCTAAAGACAATAGTGGTTACA-AATGAACAAATGAATT  49
      ||||||| |||||||||||||| ||||| |||| |||| ||||| |||||
seq2  TTAACTG-CTTTCTAAAGACAAAAGTGG-TACACAATG-ACAAAAGAATT  47

seq1  CATAAAATCTTCCTTGAGATTATGCCTTCAGGTTGCAAGGTAGACTGACT  99
      ||||||||||    ||||||  |||| ||||||||||||||||||| |||
seq2  CATAAAATCT---CTGAGATATTGCC-TCAGGTTGCAAGGTAGACTAACT  93

seq1  CCCCAAGGGCTGTCAAAGGAGCATCACAGAACAGTAGCAGTCAAATTTGT  149
      |||| |||||||| |||||||| |||||||||||||||||||||| ||||
seq2  CCCCCAGGGCTGTTAAAGGAGC-TCACAGAACAGTAGCAGTCAAA-TTGT  141

seq1  TCA-GTTGCATTTTGTAAATTTTACCTTGGTCCCCTTAGAAGGAATTGTA  198
      ||| ||||||  ||||||| |||||  | |||||||||||| ||| || |
seq2  TCAGGTTGCA-ATTGTAAA-TTTAC--TTGTCCCCTTAGAA-GAAATGGA  186

seq1  AAGCTC-AGGTGCTCCCTTAGATGAGGATAGAAGTTCAGTTTGGATTTCA  247
      |||||| ||||||||| |||||||| ||||||||||||| ||||||||||
seq2  AAGCTCAAGGTGCTCCTTTAGATGA-GATAGAAGTTCAG-TTGGATTTCA  234

seq1  TTGTTCCCCCCACTTTTAGAAGACAAGGCCAGCCTGCATGGCCTTA-TAT  296
      ||||||||||||| ||||||||||||| |||||||||||||||||| |||
seq2  TTGTTCCCCCCAC-TTTAGAAGACAAGCCCAGCCTGCATGGCCTTATTAT  283

seq1  C-ATGGTCACCAGCCATTAGAACAAATTTTCGCTCTATATG-AAAATATA  344
      | |||||||||||||||||||||||| |||||||||||||| ||||||||
seq2  CAATGGTCACCAGCCATTAGAACAAAATTTCGCTCTATATGAAAAATATA  333

seq1  CTGTAGGAAATTTAAAGCCAAGGTAAACTTCTGATGGTAAAATTTACCTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGGAAATTTAAAGCCAAGGTAAACTTCTGATGGTAAAATTTACCTT  383

seq1  TGCCTGACAAGGATAGTGGGATCAGAAGTGTCAGATCAACAGGGAATCAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGACAAGGATAGTGGGATCAGAAGTGTCAGATCAACAGGGAATCAG  433

seq1  ACTTACTTAAAGACATGCAAATCTTGAGGTCTCACATGCAGGCCACCAGG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACTTAAAGACATGCAAATCTTGAGGTCTCACATGCAGGCCACCAGG  483

seq1  CTCCTCTTTCCAACTCTTCCCCACCTTTTTCTGGTTTCTAGGTTTATTTA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTTTCCAACTCTTCCCCACCTTTTTCTGGTTTCTAGGTTTATTTA  533

seq1  TTTTTATTCAGATATGAACATTTGATGCAGTGCCCTTCTATGTTAAGTGC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTCAGATATGAACATTTGATGCAGTGCCCTTCTATGTTAAGTGC  583

seq1  ATATTCTGAAGAAGATAGTAGTGCATTTAACAATGAACATTTTTTTGTTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTGAAGAAGATAGTAGTGCATTTAACAATGAACATTTTTTTGTTT  633

seq1  TGTTTGTTTTGTTTTTTGTTTTTTGAGGTAGGTTTTCTCTGTATAATCCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTTGTTTTTTGTTTTTTGAGGTAGGTTTTCTCTGTATAATCCT  683

seq1  GGCTGTCCCAGAACTCACTTTGTAGACCAAGCTGGCCTCAAACTCAGAAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTCCCAGAACTCACTTTGTAGACCAAGCTGGCCTCAAACTCAGAAA  733

seq1  TCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGTGTCACCA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGTGTCACCA  783

seq1  CCGCCCAGCTAACAATGAATATTTTTAATAAAAATGAAAAATTATTTCTA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCCAGCTAACAATGAATATTTTTAATAAAAATGAAAAATTATTTCTA  833

seq1  AACTGTGAAGGAAGAAACTGGATACCATAGAGCCCCAGGGCTAGTCCCAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGAAGGAAGAAACTGGATACCATAGAGCCCCAGGGCTAGTCCCAT  883

seq1  AGTGTGTGAAACCTGTATTGTCTTGTATGATTTACAATAAATATTAAGCA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTGAAACCTGTATTGTCTTGTATGATTTACAATAAATATTAAGCA  933

seq1  TTCAAAATCTCTAATCAATTTGCTTGGACACTTCCAAATTGGTGGTAGGA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAATCTCTAATCAATTTGCTTGGACACTTCCAAATTGGTGGTAGGA  983

seq1  GCTGAAACCATTTGGATATTTTCGTGAGCACCAGTTTGTTATGGATAATA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAACCATTTGGATATTTTCGTGAGCACCAGTTTGTTATGGATAATA  1033

seq1  GTCCTTTCCCAAACTGGATAAGGCTTCTGCCATGATAAAAAAAAATAAGG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTCCCAAACTGGATAAGGCTTCTGCCATGATAAAAAAAAATAAGG  1083

seq1  AAACTAAGAACTGTATATAAATGAGAGAAGGGGAAGGGAGGGAAAGAGGT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAAGAACTGTATATAAATGAGAGAAGGGGAAGGGAGGGAAAGAGGT  1133

seq1  TAAGAGGGAATTC  1157
      |||||||||||||
seq2  TAAGAGGGAATTC  1146