BAC Information

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BAC

Clone NameB6Ng01-080J19
Chromosome3 (Build37)
Map Location 41,059,222 - 41,059,737
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080J19.bB6Ng01-080J19.g
ACCDH895701DH895702
length1,0161,235
definitionDH895701|Mus musculus domesticus DNA, BAC clone: B6Ng01-080J19, 5' end.DH895702|Mus musculus domesticus DNA, BAC clone: B6Ng01-080J19, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgtttagctctgagtcccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatataggatattagtccc
ttatctgatttaggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgatggtgtcttttgccttacagaagctttgctgtttta
tgaggtcccatttgtcaattcttgatcttacagcacaagccattgctgtt
ctattcaggaatttttcccctgtgcccatatcttcgaggctattccccac
tttctcctctataggtttcagtgtctctggttttatgtggagttccttga
tccacttagatttgaccttactacaaggagataggaatggatcaatttgc
attcttctacatgataaccaccagttgtgccagcaccatttgttgaaaat
gctgtcttttttccactggatggttttagctcccttgtcaaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtcgctataccagtaccatgcagtttttatcacaattgc
tctgtagtacagctttaggtcaggcacggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcagattgctttttctacttcgttgaagaattgagttggattttg
atggggattgcattgaatctgtagattgcttttggcaagatagccatttt
tacaatgttgatcctgccaatccatgagcattggagatctttccatcttc
tgagatcttctttaatttctttctttagagacttgaatttcttatcatac
agatcttttgcttccttagttagagtcacgccaaggtattttatattatt
gtactattgagaaggtgttgtttccctcatttctttcttcagcctgttat
tctttgtgtagagaaa
gaattctcctctgaagaaacagactgggaggaagaagcagctcattatga
gaaaaaagggtaccagccaggtaaagtgctagctaatcagttaaggaagc
caaaagcggctggcgaaggccagtttgctgattggcctcagggcagtcgg
cttcaaggtccgccctatgcggagtccccgccctgcgtagtggtcagccc
tgcgcagagagacaatgcgcagagaggcaatgtgcagactcattcattcc
cagagaggaacaaaggaaaatacaacaggcatttccagtctttgaaggag
ccgagggtgggcgtgtccacgctccggtagaatacgtacagattaaagaa
attgccgagtcggtccgtaaatacggaaccaatgctaattttaccttggt
gcagttagacaggctcgccggcatggcactaactcctgctgactggcaaa
cgattgtaaaagccgctctccctagtatgggcaaatatatggaatggaga
gcgctttggcatgaagctgcacaagcgcaggcccgagcaaacgcagctgc
tttgactccagagcagagagattggacttttgacttgttaacgggtcagg
gagcttattctgctgatcagacaaactaccattggggagcttatgcccag
atttcttccacggctattagggcctggaaggcgctctcccgagcaggtga
aaccactgggcagttaacaaagataatccagggacctcaggaatccttct
cagattttgtggccagaatgacagaggcagcagagcgtatttttggagag
tcagagcaagctgcgcctctgatagaacagctcatctatgagcaagccac
aaaggagtgccgagcggccatagctccaagaaagaacaaaggcttacaag
actggctcaggtctgtcgagagcttgggggactctcaccatgcagcttag
cggccgccatcctccaatctcagaaccgctcatgagcagaaatgatcaga
ggacatgttttatttgcgaaagcctgggcattttaagaaagaatgcagag
ctccagaataacaggagggactcttcacctcttggctctaggtgtgcagg
taatcaataagagcttgacccagtgtcgcctctgtgaggattatagggca
gaatctttcccacctgatagtcactcgacttatgggccaaatcacggtta
ctcgggccccctccgttgcactagtgccccttaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059222_41059737
seq2: B6Ng01-080J19.b_53_569 (reverse)

seq1  ATCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATC  50
      | |||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ACCCACACACCTATGGTCACTTGATCTTTGACAAGGGAGCTAAAACCATC  50

seq1  CAGTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CAGTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTG  100

seq1  GTTATCATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACTA  150
      |||||||||||||||||||| |||||||||| ||||||||||||||| ||
seq2  GTTATCATGTAGAAGAATGCAAATTGATCCATTCCTATCTCCTTGTAGTA  150

seq1  AGGTCAAATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACACTG  200
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGGTCAAATCTAAGTGGATCAAGGAACTCCACATAAAACCAGAGACACTG  200

seq1  AAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGG  250
      |||| ||||||||||||||||||||| ||||| |||||||||| ||||||
seq2  AAACCTATAGAGGAGAAAGTGGGGAATAGCCTCGAAGATATGGGCACAGG  250

seq1  GGAAAAATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAA  300
      ||||||||||||| ||||||||||||||||||||||||||||||  ||||
seq2  GGAAAAATTCCTGAATAGAACAGCAATGGCTTGTGCTGTAAGATCAAGAA  300

seq1  TAGACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGAC  350
      | ||||||||||||||||| |||| |||||||||||| ||||||||||||
seq2  TTGACAAATGGGACCTCATAAAACAGCAAAGCTTCTGTAAGGCAAAAGAC  350

seq1  ACCGTCAATAAGACAAAAAGG-CACCAACAGATTGGGAAAGGATCTTTAC  399
      ||| ||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACCATCAATAAGACAAAAAGGCCACCAACAGATTGGGAAAGGATCTTTAC  400

seq1  CTATCCTAAATCAGATAGGGGACTAATATCCAATATATATCAAGAACTCA  449
      ||||||||||||||||| ||||||||||||| |||||||| |||||||||
seq2  CTATCCTAAATCAGATAAGGGACTAATATCCTATATATATAAAGAACTCA  450

seq1  AGAAGGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCA  499
      |||||||||| |||||||||||||||||||||||||||||||||| ||||
seq2  AGAAGGTGGACTCCAGAAAATCAAATAACCCCATTAAAAAATGGGACTCA  500

seq1  GAGCTAAACAAAGAATT  516
      |||||||||||||||||
seq2  GAGCTAAACAAAGAATT  517