BAC Information

Click to search

BAC

Clone NameB6Ng01-080K19
Chromosome3 (Build37)
Map Location 130,573,223 - 130,705,554
singlet/doubletdoublet
Overlap geneLOC545568
Upstream geneCfi, Pla2g12a, Casp6, Ccdc109b, Sec24b, EG668844, EG668845, Col25a1, Agxt2l1, 2310008M10Rik, Rpl34, LOC546811
Downstream geneLef1, 6720418B01Rik, Hadh, Cyp2u1, Sgms2, LOC100043443, Papss1, Olfr375-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080K19.bB6Ng01-080K19.g
ACCDH895745DH895746
length1,1331,043
definitionDH895745|Mus musculus domesticus DNA, BAC clone: B6Ng01-080K19, 5' end.DH895746|Mus musculus domesticus DNA, BAC clone: B6Ng01-080K19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,573,223 - 130,574,362)(130,704,504 - 130,705,554)
sequence
gaattcttccaagtaagcaattatgaaacaggaaaatttacttttttgaa
aagtaaatttcaaggcaatacaacattatataattgtggagacacattta
ttgagcaaaagagtaaatgtctgtgacagaggagatacaaaagatgacat
aaggtgtatcactggttcttaatggggagagaggtctccagacactgcct
tgaatactaccttgtcagtctgtggatggctcagaggtcaggagtgtaca
ctgctcttgatgaggatgtctgttttgttcccagcatctgtgttaggcag
ctcactgctgtctgtagcaccaactcaatactcattcctagactccttgg
gcaccagcactcacatggcacctgcatgtgaacacacacacacacacaca
cacacacacacacacacacaaactttttaagcctcttatagccagttgag
atgtacactcccttaatcatggcacttgggatggagaaataggtagatct
ctgtgaatttgaagttagttgggtctacatagtaagactttttaaatttt
ttaaataaacatctttattttatttttaatatttagattttttccattaa
tctctttaattctcagactgtctcattttacacagagcattcaggcttgc
ttgagtctggcactatgctggagagtagactgtaccattgtgaggccagc
ttccgtgtacgcttctttcattgcacccagcaagctcagcatcaagagcc
aatggaaaagagaaacagaggtgacccttatcatgctaaaatggctaaga
aaagtctaccttttaaactgtagatcagaacattctacttggctggtccc
agggacctccgttagttatacttactgcttgttctagaagcaacaacttc
tgctttcttgtgtgacacagaacaagtcctatccctcctcaacatgacaa
agcctcacaggttggcatacagactttttgtcttctccaaggccccttct
ggagcagcagagcctctttactagaccatgtgtcaccccttctaggtaac
tccattttatcagcattgtctgaacaccccaacttggtcaaggtccttcc
taaatgtggttacccagaagtaaacgcatattc
gaattcactcattcttatgtgatctcagaaactaagcagggctgagcctg
gttagtacttgtataagagaacaaataaaataaagtaaatggaagatagt
tgcatttccaaatgattccttaaaatgcctgaaaaatatctaagtacttg
ttacaaaggggtagtttgagaagctaacaagaggagttgccaaaccttgt
ccttggagaaaataactcccaactaggcaggtgtttcccattctctttaa
taaaaaatatataaacaccttcccttcttccctacaatctatgtttctac
ctctaaactcttctgcgcagggaagtgtccagtgtcataaaaaactcaaa
cataggtttgttcacggtccttgcataagaagggcaattctgcttaagac
agactctaccaatccttgtttaaatttgaacaggcaagagaaggctccaa
gaagttttgataatagggtgtttggactctctgccatcttttaatttgtt
agcagttatagtgggattgatcaggagcattcaaacttcctagtccttct
ggaggaccaaagcatctcagagagttaaatatagtcattttagatcactt
ggttcttggaaaaaaattaagataaaaagatagaaaatgtgtaaaataag
gcagaggactctagggaaagccttcactgggcaaggtgagatggggtgga
tacctgtgtgtcaaggctgacctggcttccctgtgctttgtcctgtgggt
gacctgtgccatcttctgcatctaaggcagaaagaaggctccactaataa
ctctgccagggagctgtaagtgctctccttttgttaaattcgtgttttta
atttcctggtgaggaagtctaagaggataaataattttacagctacgtat
aaaacaggaagggagccattaagcaatattccccagacttatgtacacac
agatctctgaggaatcttgttaaaatgcaatttgatggggccagagtgag
gtggagttctgctttctatcagccctggggtgatgctcatcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_130573223_130574362
seq2: B6Ng01-080K19.b_47_1179

seq1  GAATTCTTCCAAGTAAGCAATTATGAAACAGGAAAATTTACTTTTTTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCAAGTAAGCAATTATGAAACAGGAAAATTTACTTTTTTGAA  50

seq1  AAGTAAATTTCAAGGCAATACAACATTATATAATTGTGGAGACACATTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAATTTCAAGGCAATACAACATTATATAATTGTGGAGACACATTTA  100

seq1  TTGAGCAAAAGAGTAAATGTCTGTGACAGAGGAGATACAAAAGATGACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCAAAAGAGTAAATGTCTGTGACAGAGGAGATACAAAAGATGACAT  150

seq1  AAGGTGTATCACTGGTTCTTAATGGGGAGAGAGGTCTCCAGACACTGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGTATCACTGGTTCTTAATGGGGAGAGAGGTCTCCAGACACTGCCT  200

seq1  TGAATACTACCTTGTCAGTCTGTGGATGGCTCAGAGGTCAGGAGTGTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATACTACCTTGTCAGTCTGTGGATGGCTCAGAGGTCAGGAGTGTACA  250

seq1  CTGCTCTTGATGAGGATGTCTGTTTTGTTCCCAGCATCTGTGTTAGGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTTGATGAGGATGTCTGTTTTGTTCCCAGCATCTGTGTTAGGCAG  300

seq1  CTCACTGCTGTCTGTAGCACCAACTCAATACTCATTCCTAGACTCCTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGCTGTCTGTAGCACCAACTCAATACTCATTCCTAGACTCCTTGG  350

seq1  GCACCAGCACTCACATGGCACCTGCATGTGAACACACACACACACACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAGCACTCACATGGCACCTGCATGTGAACACACACACACACACACA  400

seq1  CACACACACACACACACACAAACTTTTTAAGCCTCTTATAGCCAGTTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACAAACTTTTTAAGCCTCTTATAGCCAGTTGAG  450

seq1  ATGTACACTCCCTTAATCATGGCACTTGGGATGGAGAAATAGGTAGATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACACTCCCTTAATCATGGCACTTGGGATGGAGAAATAGGTAGATCT  500

seq1  CTGTGAATTTGAAGTTAGTTGGGTCTACATAGTAAGACTTTTTAAATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAATTTGAAGTTAGTTGGGTCTACATAGTAAGACTTTTTAAATTTT  550

seq1  TTAAATAAACATCTTTATTTTATTTTTAATATTTAGATTTTTTCCATTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAAACATCTTTATTTTATTTTTAATATTTAGATTTTTTCCATTAA  600

seq1  TCTCTTTAATTCTCAGACTGTCTCATTTTACACAGAGCATTCAGGCTTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTAATTCTCAGACTGTCTCATTTTACACAGAGCATTCAGGCTTGC  650

seq1  TTGAGTCTGGCACTATGCTGGAGAGTAGACTGTACCATTGTGAGGCCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTCTGGCACTATGCTGGAGAGTAGACTGTACCATTGTGAGGCCAGC  700

seq1  TTCCGTGTACGCTTCTTTCATTGCACCCAGCAAGCTCAGCATCAAGAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGTGTACGCTTCTTTCATTGCACCCAGCAAGCTCAGCATCAAGAGCC  750

seq1  AATGGAAAAGAGAAACAGAGGTGACCCTTATCATGCTAAAATGGCTAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAAAGAGAAACAGAGGTGACCCTTATCATGCTAAAATGGCTAAGA  800

seq1  AAAGTCTACCTTTTAAACTGTAGATCAGAACATTCTACTTGGCTGGTCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTACCTTTTAAACTGTAGATCAGAACATTCTACTTGGCTGGTCCC  850

seq1  AGGGACCTCCGTTAGTTATACTTACTGCTTGTTCTAGAAGCAACAACTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACCTCCGTTAGTTATACTTACTGCTTGTTCTAGAAGCAACAACTTC  900

seq1  TGCTTTCTTGTGTGACACAGAACAAGTCCTATCCCTCCTCAACATGACAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCTTGTGTGACACAGAACAAGTCCTATCCCTCCTCAACATGACAA  950

seq1  AGCCTCACAGGTTGGCATACAGACCTTTTGTCTTCTCCAGGCCCCCTTTC  1000
      |||||||||||||||||||||||| |||||||||||||| | |||| |||
seq2  AGCCTCACAGGTTGGCATACAGACTTTTTGTCTTCTCCAAGGCCCC-TTC  999

seq1  TGGAGCAGCCAGAGCCTCTTTAACTAAGACCCATGTGTCACCCCTTCTAG  1050
      |||||||| |||||||||||| ||| ||| ||||||||||||||||||||
seq2  TGGAGCAG-CAGAGCCTCTTT-ACT-AGA-CCATGTGTCACCCCTTCTAG  1045

seq1  GTAAACTCCATTATATTCAGCCATGTCTGACACA-CCCAACTTGGTCAAG  1099
      || ||||||||| || |||||  ||||||| ||| |||||||||||||||
seq2  GT-AACTCCATTTTA-TCAGCATTGTCTGA-ACACCCCAACTTGGTCAAG  1092

seq1  GTCTCTCCTAAATGTGG-TACCCAGAAGTAAACGCAGTATTC  1140
      |||  |||||||||||| |||||||||||||||||| |||||
seq2  GTCCTTCCTAAATGTGGTTACCCAGAAGTAAACGCA-TATTC  1133

seq1: chr3_130704504_130705554
seq2: B6Ng01-080K19.g_69_1111 (reverse)

seq1  AGGATGAGCATCA-CCCAGGGCTTGATAGGAAAGCAGAAACTCCACCTCA  49
      ||||||||||||| |||||||| ||||| |||||||| ||||||||||||
seq2  AGGATGAGCATCACCCCAGGGC-TGATA-GAAAGCAG-AACTCCACCTCA  47

seq1  CTCTGGCCCCATCAAATTTGCATTTTAACAAGATTCCTCAGAGATCTGTG  99
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTCTGGCCCCATCAAA-TTGCATTTTAACAAGATTCCTCAGAGATCTGTG  96

seq1  TGTACATTAAAGTCTGGGGAATATTGCTTAATGGCTCCCTTCCTGTTTTT  149
      |||||||  |||||||||||||||||||||||||||||||||||| ||||
seq2  TGTACAT--AAGTCTGGGGAATATTGCTTAATGGCTCCCTTCCTG-TTTT  143

seq1  ATACGTTAGCTGTAAAATTATTTTATCCTCTTAGACTTCCTCACCAGGAA  199
      ||||| |||||||||||||| |||||||||||||||||||||||||||||
seq2  ATACG-TAGCTGTAAAATTA-TTTATCCTCTTAGACTTCCTCACCAGGAA  191

seq1  ATTAAAAACACGAATTTAACAAAAGGAGAGCACTTACAGCTCCCTGGCAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAACACGAATTTAACAAAAGGAGAGCACTTACAGCTCCCTGGCAG  241

seq1  AGTTATTAGTGGAGCCTTCTTTCTGCCTTAGATGCAGAAGATGGCACAGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTAGTGGAGCCTTCTTTCTGCCTTAGATGCAGAAGATGGCACAGG  291

seq1  TCACCCACAGGACAAAGCACAGGGAAGCCAGGTCAGCCTTGACACACAGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCACAGGACAAAGCACAGGGAAGCCAGGTCAGCCTTGACACACAGG  341

seq1  TATCCACCCCATCTCACCTTGCCCAGTGAAGGCTTTCCCTAGAGTCCTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCACCCCATCTCACCTTGCCCAGTGAAGGCTTTCCCTAGAGTCCTCT  391

seq1  GCCTTATTTTACACATTTTCTATCTTTTTATCTTAATTTTTTTCCAAGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTATTTTACACATTTTCTATCTTTTTATCTTAATTTTTTTCCAAGAA  441

seq1  CCAAGTGATCTAAAATGACTATATTTAACTCTCTGAGATGCTTTGGTCCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTGATCTAAAATGACTATATTTAACTCTCTGAGATGCTTTGGTCCT  491

seq1  CCAGAAGGACTAGGAAGTTTGAATGCTCCTGATCAATCCCACTATAACTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGGACTAGGAAGTTTGAATGCTCCTGATCAATCCCACTATAACTG  541

seq1  CTAACAAATTAAAAGATGGCAGAGAGTCCAAACACCCTATTATCAAAACT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAAATTAAAAGATGGCAGAGAGTCCAAACACCCTATTATCAAAACT  591

seq1  TCTTGGAGCCTTCTCTTGCCTGTTCAAATTTAAACAAGGATTGGTAGAGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGAGCCTTCTCTTGCCTGTTCAAATTTAAACAAGGATTGGTAGAGT  641

seq1  CTGTCTTAAGCAGAATTGCCCTTCTTATGCAAGGACCGTGAACAAACCTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTAAGCAGAATTGCCCTTCTTATGCAAGGACCGTGAACAAACCTA  691

seq1  TGTTTGAGTTTTTTATGACACTGGACACTTCCCTGCGCAGAAGAGTTTAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGAGTTTTTTATGACACTGGACACTTCCCTGCGCAGAAGAGTTTAG  741

seq1  AGGTAGAAACATAGATTGTAGGGAAGAAGGGAAGGTGTTTATATATTTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGAAACATAGATTGTAGGGAAGAAGGGAAGGTGTTTATATATTTTT  791

seq1  TATTAAAGAGAATGGGAAACACCTGCCTAGTTGGGAGTTATTTTCTCCAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAGAGAATGGGAAACACCTGCCTAGTTGGGAGTTATTTTCTCCAA  841

seq1  GGACAAGGTTTGGCAACTCCTCTTGTTAGCTTCTCAAACTACCCCTTTGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAGGTTTGGCAACTCCTCTTGTTAGCTTCTCAAACTACCCCTTTGT  891

seq1  AACAAGTACTTAGATATTTTTCAGGCATTTTAAGGAATCATTTGGAAATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGTACTTAGATATTTTTCAGGCATTTTAAGGAATCATTTGGAAATG  941

seq1  CAACTATCTTCCATTTACTTTATTTTATTTGTTCTCTTATACAAGTACTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTATCTTCCATTTACTTTATTTTATTTGTTCTCTTATACAAGTACTA  991

seq1  ACCAGGCTCAGCCCTGCTTAGTTTCTGAGATCACATAAGAATGAGTGAAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCTCAGCCCTGCTTAGTTTCTGAGATCACATAAGAATGAGTGAAT  1041

seq1  TC  1051
      ||
seq2  TC  1043