BAC Information

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BAC

Clone NameB6Ng01-080K20
Chromosome3 (Build37)
Map Location 122,271,803 - 122,400,607
singlet/doubletdoublet
Overlap genePpia-ps3_2252.1
Upstream geneA730020M07Rik, 4930432M17Rik, F3, Abcd3, LOC100043298, Arhgap29, Abca4, EG668788, LOC626807, LOC100043724, Gclm, Ppia-ps3_1245.1, Dnttip2, LOC675117, LOC100043726, Bcar3, Fnbp1l
Downstream genePde5a, LOC668792, Fabp2, 1810037I17Rik, Usp53, Myoz2, Synpo2, Sec24d, G430022H21Rik, Prss12, EG668804, Ndst3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080K20.bB6Ng01-080K20.g
ACCDH895747DH895748
length1,0321,146
definitionDH895747|Mus musculus domesticus DNA, BAC clone: B6Ng01-080K20, 5' end.DH895748|Mus musculus domesticus DNA, BAC clone: B6Ng01-080K20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,399,866 - 122,400,607)(122,271,803 - 122,272,950)
sequence
gaattccttcaccctaaatcccccacgtctatacctataggtcacgaccc
ctgtggcaaacctctgtctccaaaattatttacattacaattcataacag
tagcaaaatgacagttataatgtagcaatggaaataattttatggttggg
gtcaccacaacataaggacctgtgttaaaaggtggtcgcgtggggaaggt
tgagaactatgagtctagagattttgatatggctggttctctattgtctt
catgactgtggtgtcataacaagttttaaggtcagtaagtgggttacgtc
tttgttttcctttaagaatgtctgctattttataagaatcttgaagctct
atacaagtctgaatcttaagacaggtctgtcagtttctatggaaagataa
atcagtatgaactttaatagtcatcgtgttgaatctgtagaatgcttcag
ggaaggactgccatcttgataactttaagtctttcagaccccggacaaag
ggtgtctccccatcacttagatcttcatttacctgatgatcatatatatt
tcaatgtactctcattatgcatcttttgttaggttaagtctaaatattct
gttccttttgatacttttactaatgctgctattttctcacattcatttct
ctttaagtcattgctattgggtagtaatataaccttttttttttccatgc
ataggccttgagttctgtgatcattatgtaacgatatggtcatttcctcc
aggcataatatgaccgttgccatcatgaagcatagctgtagccatggtaa
caaaataagcaaaacaatacagttgttttgtttagctctaaagtcagggc
catggagctgtagacgttccagagtataaggacacagagaggatcaccag
cccctctacagcaatcccaaccaccattccttggcactttcctttcccga
atcatatcatcttgagagtattgttggaaaactagggcttttgagtcact
tatgctgtgtaataaaccctcacccatgttcc
gaattccaccatcctcaaaaggctcttaacttttattaaggtgataaaat
atagacatgtatatatagttatgcatctttagagttacaaagaaagtaaa
aaaatttatttaaaatacatcttataggttactttaatgcttttaaaata
acctttaaaacaggcataatgttaaagaaaataatgatcatcttcacaga
actcactcttctatagaaagtcggctaacaagcatcacatattttaggct
tgcacagcaaacagcactgtcgacaactgtgtagccttagcaatgaatgc
agactaaatccgactctatggacactcaaattcgaattttataaaatttt
atatgccacagaatctttacttgttaattctttttcaacgacctaaatat
atgaagtattcttaatttatgggacctaggaaacaaaagtaagtgatagg
ctgtacttggtctgtgggctgcaatgttgccaaattctgatcttaaattc
agattataaactgataaccatatctcacagtttttctttactgaaaattt
ttttcgcagcatattctcatctcacgatttttaatcaaggaaatttagta
atatagataaccagttttaaactgaacatttagttctaaaaagaaaaata
attattttctgaaactatttcataagactgttgtaattagatgaaaatca
taaatattaccatttttctttccgttttcagatcatgggcatatctcatt
aattcaccatatactctgtgcgccatttcttctgctactacctctcgctg
tcctgcatagtcgtttaactcattaaggatgttaaaaaaggcgatacatg
aagtaaacctgacaaacatattaaaaatgatgagatttatttttgctcca
ttaccatttttttggtgaggttttttggtgtctggatgttgataagctta
atatgctcaacctaatcccagctactggttctatattactacgtatgcaa
agaaaacctgcattaagcctcaagttggacatatttaagtatcttttaca
tagcctttaattttaaataaacgggtattggggtcaaaaaaatagtaagg
aatcctccctgcagcctcctttgacatatgggaatctttagttgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_122399866_122400607
seq2: B6Ng01-080K20.b_46_787 (reverse)

seq1  TGACCATATCGTTACATAATGATCACAGAACTCAAGGCCTATGCATGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCATATCGTTACATAATGATCACAGAACTCAAGGCCTATGCATGGAA  50

seq1  AAAAAAAAGGTTATATTACTACCCAATAGCAATGACTTAAAGAGAAATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAGGTTATATTACTACCCAATAGCAATGACTTAAAGAGAAATGA  100

seq1  ATGTGAGAAAATAGCAGCATTAGTAAAAGTATCAAAAGGAACAGAATATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAGAAAATAGCAGCATTAGTAAAAGTATCAAAAGGAACAGAATATT  150

seq1  TAGACTTAACCTAACAAAAGATGCATAATGAGAGTACATTGAAATATATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTTAACCTAACAAAAGATGCATAATGAGAGTACATTGAAATATATA  200

seq1  TGATCATCAGGTAAATGAAGATCTAAGTGATGGGGAGACACCCTTTGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCATCAGGTAAATGAAGATCTAAGTGATGGGGAGACACCCTTTGTCC  250

seq1  GGGGTCTGAAAGACTTAAAGTTATCAAGATGGCAGTCCTTCCCTGAAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCTGAAAGACTTAAAGTTATCAAGATGGCAGTCCTTCCCTGAAGCA  300

seq1  TTCTACAGATTCAACACGATGACTATTAAAGTTCATACTGATTTATCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACAGATTCAACACGATGACTATTAAAGTTCATACTGATTTATCTTT  350

seq1  CCATAGAAACTGACAGACCTGTCTTAAGATTCAGACTTGTATAGAGCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGAAACTGACAGACCTGTCTTAAGATTCAGACTTGTATAGAGCTTC  400

seq1  AAGATTCTTATAAAATAGCAGACATTCTTAAAGGAAAACAAAGACGTAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTCTTATAAAATAGCAGACATTCTTAAAGGAAAACAAAGACGTAAC  450

seq1  CCACTTACTGACCTTAAAACTTGTTATGACACCACAGTCATGAAGACAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTACTGACCTTAAAACTTGTTATGACACCACAGTCATGAAGACAAT  500

seq1  AGAGAACCAGCCATATCAAAATCTCTAGACTCATAGTTCTCAACCTTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACCAGCCATATCAAAATCTCTAGACTCATAGTTCTCAACCTTCCC  550

seq1  CACGCGACCACCTTTTAACACAGGTCCTTATGTTGTGGTGACCCCAACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCGACCACCTTTTAACACAGGTCCTTATGTTGTGGTGACCCCAACCA  600

seq1  TAAAATTATTTCCATTGCTACATTATAACTGTCATTTTGCTACTGTTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTATTTCCATTGCTACATTATAACTGTCATTTTGCTACTGTTATG  650

seq1  AATTGTAATGTAAATAATTTTGGAGACAGAGGTTTGCCACAGGGGTCGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTAATGTAAATAATTTTGGAGACAGAGGTTTGCCACAGGGGTCGTG  700

seq1  ACCTATAGGTATAGACGTGGGGGATTTAGGGTGAAGGAATTC  742
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATAGGTATAGACGTGGGGGATTTAGGGTGAAGGAATTC  742

seq1: chr3_122271803_122272950
seq2: B6Ng01-080K20.g_70_1215

seq1  GAATTCCACCATCCTCAAAAGGCTCTTAACTTTTATTAAGGTGATAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCATCCTCAAAAGGCTCTTAACTTTTATTAAGGTGATAAAAT  50

seq1  ATAGACATGTATATATAGTTATGCATCTTTAGAGTTACAAAGAAAGTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACATGTATATATAGTTATGCATCTTTAGAGTTACAAAGAAAGTAAA  100

seq1  AAAATTTATTTAAAATACATCTTATAGGTTACTTTAATGCTTTTAAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTATTTAAAATACATCTTATAGGTTACTTTAATGCTTTTAAAATA  150

seq1  ACCTTTAAAACAGGCATAATGTTAAAGAAAATAATGATCATCTTCACAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTAAAACAGGCATAATGTTAAAGAAAATAATGATCATCTTCACAGA  200

seq1  ACTCACTCTTCTATAGAAAGTCGGCTAACAAGCATCACATATTTTAGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTCTTCTATAGAAAGTCGGCTAACAAGCATCACATATTTTAGGCT  250

seq1  TGCACAGCAAACAGCACTGTCGACAACTGTGTAGCCTTAGCAATGAATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGCAAACAGCACTGTCGACAACTGTGTAGCCTTAGCAATGAATGC  300

seq1  AGACTAAATCCGACTCTATGGACACTCAAATTCGAATTTTATAAAATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAAATCCGACTCTATGGACACTCAAATTCGAATTTTATAAAATTTT  350

seq1  ATATGCCACAGAATCTTTACTTGTTAATTCTTTTTCAACGACCTAAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCCACAGAATCTTTACTTGTTAATTCTTTTTCAACGACCTAAATAT  400

seq1  ATGAAGTATTCTTAATTTATGGGACCTAGGAAACAAAAGTAAGTGATAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTATTCTTAATTTATGGGACCTAGGAAACAAAAGTAAGTGATAGG  450

seq1  CTGTACTTGGTCTGTGGGCTGCAATGTTGCCAAATTCTGATCTTAAATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACTTGGTCTGTGGGCTGCAATGTTGCCAAATTCTGATCTTAAATTC  500

seq1  AGATTATAAACTGATAACCATATCTCACAGTTTTTCTTTACTGAAAATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATAAACTGATAACCATATCTCACAGTTTTTCTTTACTGAAAATTT  550

seq1  TTTTCGCAGCATATTCTCATCTCACGATTTTTAATCAAGGAAATTTAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCGCAGCATATTCTCATCTCACGATTTTTAATCAAGGAAATTTAGTA  600

seq1  ATATAGATAACCAGTTTTAAACTGAACATTTAGTTCTAAAAAGAAAAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGATAACCAGTTTTAAACTGAACATTTAGTTCTAAAAAGAAAAATA  650

seq1  ATTATTTTCTGAAACTATTTCATAAGACTGTTGTAATTAGATGAAAATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTCTGAAACTATTTCATAAGACTGTTGTAATTAGATGAAAATCA  700

seq1  TAAATATTACCATTTTTCTTTCCGTTTTCAGATCATGGGCATATCTCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTACCATTTTTCTTTCCGTTTTCAGATCATGGGCATATCTCATT  750

seq1  AATTCACCATATACTCTGTGCGCCATTTCTTCTGCTACTACCTCTCGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCACCATATACTCTGTGCGCCATTTCTTCTGCTACTACCTCTCGCTG  800

seq1  TCCTGCATAGTCGTTTAACTCATTAAGGATGTTAAAAAAGGCGATACATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCATAGTCGTTTAACTCATTAAGGATGTTAAAAAAGGCGATACATG  850

seq1  AAGTAAACCTGACAAAACATATTAAAAATGATGAGATTTATTTTTGCTCC  900
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AAGTAAACCTGAC-AAACATATTAAAAATGATGAGATTTATTTTTGCTCC  899

seq1  ATTACCATTTTTTTGGTGAGGTTTTTTTGGTGTCTGGATGTTGATAAGCT  950
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATTACCATTTTTTTGGTGAGG-TTTTTTGGTGTCTGGATGTTGATAAGCT  948

seq1  TAATATGCTCAACCTAATCCCAGCTACTGGTTCTATATTAACTACGTATG  1000
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TAATATGCTCAACCTAATCCCAGCTACTGGTTCTATATT-ACTACGTATG  997

seq1  CAAAGAAAACCTGCATTAAG-CTCAAGTTGGACATATTTAAGTATC-TTT  1048
      |||||||||||||||||||| ||||||||||||||||||||||||| |||
seq2  CAAAGAAAACCTGCATTAAGCCTCAAGTTGGACATATTTAAGTATCTTTT  1047

seq1  ACATAGCCTTTAATTTATAAATAAAGGGGTATTTGGGGTC-AAAATATAG  1097
      |||||||||||||||| |||||||| ||||| |||||||| |||| ||||
seq2  ACATAGCCTTTAATTT-TAAATAAACGGGTA-TTGGGGTCAAAAAAATAG  1095

seq1  TAA-GAATACTACCTGCAGGCTCTTTTGACATAGTGGAATCTTTAGGTTG  1146
      ||| |||| || ||||||| ||| |||||||||  |||||||||| ||||
seq2  TAAGGAATCCTCCCTGCAGCCTCCTTTGACATATGGGAATCTTTA-GTTG  1144

seq1  CC  1148
      ||
seq2  CC  1146