BAC Information

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BAC

Clone NameB6Ng01-080N20
Chromosome3 (Build37)
Map Location 45,779,241 - 45,780,364
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC676484, LOC100039296, Pcdh10, LOC100039282, LOC433580, LOC671801
Downstream geneEG241989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080N20.bB6Ng01-080N20.g
ACCDH895882DH895883
length1,1241,183
definitionDH895882|Mus musculus domesticus DNA, BAC clone: B6Ng01-080N20, 5' end.DH895883|Mus musculus domesticus DNA, BAC clone: B6Ng01-080N20, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattaaggaggtatgctattccacatctcaaaaagtatgagacta
gtcttgtgattctccaccttaccccaccagaaagttcaaagttagacagg
atagcccatatgaaatgctttttcacccatttcactcctgtcacagacaa
tgaaaccaactcaagcaagtagatatgcaattctttgccacatgggaaag
gacagttgtatcaagattgtcttcatggatattctaccctcagaaagctt
atcttcagcttcatgatggatctctagtagagataatgctaccatttcaa
actatctttgttactgaagtgtatcaattcaggcctcaaatgttgtgaca
ttaatattgtgttgacaagcataaaaaatgatcatccaagataagaatcc
agtgactaatcaaagaaatgaattcactaaaccctagtttgttgaatcaa
taagtttacttatacgtgaattcacaagaagatacacataagaacaaggg
cattttatgggcagttacagccccacaaaacatttccacagggagataca
tttaataattatgccctctccttcatcatggaatgctaatatttgaatat
gtaagtaggagtttggtaagaagtgttttgtgtccttactattctcagct
tcccttatctcccagttatagataagcagaaatcaagataatatgacaat
atgattgagtagagtctgttatataaatggtactatgtgaagtttttaaa
tgcttactaatgaaataccagagtacacatttagatatgtgtttatgtgt
attatttttgagaaagtaacctttgccactgaatgttcataatgtttaaa
aaggatgatcattggcctagaataactcgctttgtgatgtctcaaatata
aagagatgaaaatgtgaaatgacacagttcagtagacactgcactccaca
ctgttttctaggttagtgctgtgcacttgtggcaggctattagtaagctg
agccatgtcctaagctgctactgggtgatcagtagtcacagagccatgaa
catgacagtccagtattttttgaagacattggccaaactcctgaaatttg
caggatgcagtacattccatattc
gaattcacaaccaaacagctacactgggtgctattaccatctgcagcatc
agaatcaggaaatccagtgctttcttctggtctccacaggtgtctgaagt
cacacatacacaaatacacaaagacgcatacaaacatacatacacaccta
cacactcacagtccccagaggactttccatgctaaggatcactggtaagt
ggaaaggaacataggttccaagccaatcataatgggactttgacagcagg
accaaggacacaggagcagttcaggttccttctggttggtgctggtatag
ctaggtttcaaacacagcagacagccccatggagctcagaggagatacca
cttccacgcccaggatcttaggattccaggatcccaggatcccaggagct
tggtcacaccaggatcttagggtctcagagaaagttagactgccaagaat
tctgacacacccagaatctcaggttcacagaatactggaagaaggacagg
ctccaatcagatatattgagggcagtaagcacttgagataatcagatggc
agggggcaagcataagaacagaagcaacagaaatccaggttacatggcat
caccagaacaaaactctcctaccatagcaagtcctggatacaccatcaca
ccagaaaagaaagatatggatctaaattcacttctcatgatgatgatgga
ggactttaagaaggaaataaataactcgcttaaagaaatacagcagaaca
tatacaatcaggagaaagaattaacaaaactatccagaatctaaaaatgg
aagtagaaacaataaagaaatcacaaagggagagcactctgaaaatagaa
aacctagaaaaaaagtcaggagccaatgatgcaaggataactaacaaaat
acagagaaagagaatctcagtgcagaagatatcatagaaagacccatgga
gagttacagagacaagtttgagctgagacaaagatgacactagagactgc
atactggggatcatctgatatcagctcaaagctgcacatgcataacacaa
attgctgaaagaccctgattagctgtctctgtgagtatgccagggctggc
caaccagaattggatgctccagtctgctatgatgacagactcatggagac
taaaagaaccaggagctaagggttgcgccaccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_45779241_45780364
seq2: B6Ng01-080N20.b_50_1173

seq1  GAATTCATTAAGGAGGTATGCTATTCCACATCTCAAAAAGTATGAGACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAAGGAGGTATGCTATTCCACATCTCAAAAAGTATGAGACTA  50

seq1  GTCTTGTGATTCTCCACCTTACCCCACCAGAAAGTTCAAAGTTAGACAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGTGATTCTCCACCTTACCCCACCAGAAAGTTCAAAGTTAGACAGG  100

seq1  ATAGCCCATATGAAATGCTTTTTCACCCATTTCACTCCTGTCACAGACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCCATATGAAATGCTTTTTCACCCATTTCACTCCTGTCACAGACAA  150

seq1  TGAAACCAACTCAAGCAAGTAGATATGCAATTCTTTGCCACATGGGAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACCAACTCAAGCAAGTAGATATGCAATTCTTTGCCACATGGGAAAG  200

seq1  GACAGTTGTATCAAGATTGTCTTCATGGATATTCTACCCTCAGAAAGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTTGTATCAAGATTGTCTTCATGGATATTCTACCCTCAGAAAGCTT  250

seq1  ATCTTCAGCTTCATGATGGATCTCTAGTAGAGATAATGCTACCATTTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCAGCTTCATGATGGATCTCTAGTAGAGATAATGCTACCATTTCAA  300

seq1  ACTATCTTTGTTACTGAAGTGTATCAATTCAGGCCTCAAATGTTGTGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCTTTGTTACTGAAGTGTATCAATTCAGGCCTCAAATGTTGTGACA  350

seq1  TTAATATTGTGTTGACAAGCATAAAAAATGATCATCCAAGATAAGAATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATTGTGTTGACAAGCATAAAAAATGATCATCCAAGATAAGAATCC  400

seq1  AGTGACTAATCAAAGAAATGAATTCACTAAACCCTAGTTTGTTGAATCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACTAATCAAAGAAATGAATTCACTAAACCCTAGTTTGTTGAATCAA  450

seq1  TAAGTTTACTTATACGTGAATTCACAAGAAGATACACATAAGAACAAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTACTTATACGTGAATTCACAAGAAGATACACATAAGAACAAGGG  500

seq1  CATTTTATGGGCAGTTACAGCCCCACAAAACATTTCCACAGGGAGATACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTATGGGCAGTTACAGCCCCACAAAACATTTCCACAGGGAGATACA  550

seq1  TTTAATAATTATGCCCTCTCCTTCATCATGGAATGCTAATATTTGAATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATAATTATGCCCTCTCCTTCATCATGGAATGCTAATATTTGAATAT  600

seq1  GTAAGTAGGAGTTTGGTAAGAAGTGTTTTGTGTCCTTACTATTCTCAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTAGGAGTTTGGTAAGAAGTGTTTTGTGTCCTTACTATTCTCAGCT  650

seq1  TCCCTTATCTCCCAGTTATAGATAAGCAGAAAATCAAGATAATATGACAA  700
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCCCTTATCTCCCAGTTATAGATAAGCAG-AAATCAAGATAATATGACAA  699

seq1  TATGATTGAGTAGAGTCTGTTATATAAATGGTACTATGTGAAGTTTTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTGAGTAGAGTCTGTTATATAAATGGTACTATGTGAAGTTTTTAA  749

seq1  ATGCTTACTAATGAAATACCAGAGTACACATTTAGATATGTGTTTATGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTACTAATGAAATACCAGAGTACACATTTAGATATGTGTTTATGTG  799

seq1  TATTATTTTTGAGAAAGTAACCTTTGCCACTGAATGTTCATAATGTTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTTTTGAGAAAGTAACCTTTGCCACTGAATGTTCATAATGTTTAA  849

seq1  AAAGGATGATCATTGGCCTAGAATAACTCGCTTTGTGATGTCTCAAATAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATGATCATTGGCCTAGAATAACTCGCTTTGTGATGTCTCAAATAT  899

seq1  AAAGAGATGAAAATGTGAAAATGACACAGGTTCAGTAGACACTGCACTCC  950
      ||||||||||||||||| |||||||||| |||||||||||||||||||||
seq2  AAAGAGATGAAAATGTG-AAATGACACA-GTTCAGTAGACACTGCACTCC  947

seq1  ACACTGTTTTCTAGGTTAGTGCTGTGCACTTGTGGCAGGCTATTAGTAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTTTTCTAGGTTAGTGCTGTGCACTTGTGGCAGGCTATTAGTAAG  997

seq1  CTGAGCCATGTCCTAAGCTGCTACT-GGTGATCAGTAAGTCACAGAGCCA  1049
      ||||||||||||||||||||||||| |||||||||| |||||||||||||
seq2  CTGAGCCATGTCCTAAGCTGCTACTGGGTGATCAGT-AGTCACAGAGCCA  1046

seq1  TGAACATGACAGTCCAGTA-TTTTTGAAGACATT-GCCAAACT-CTGACA  1096
      ||||||||||||||||||| |||||||||||||| |||||||| |||| |
seq2  TGAACATGACAGTCCAGTATTTTTTGAAGACATTGGCCAAACTCCTGAAA  1096

seq1  TTTGCAGGATGCAGTACATTCAATATTC  1124
      ||||||||||||||||||||| ||||||
seq2  TTTGCAGGATGCAGTACATTCCATATTC  1124