BAC Information

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BAC

Clone NameB6Ng01-081A21
Chromosome3 (Build37)
Map Location 79,218,511 - 79,332,982
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041691, LOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766, Rapgef2, LOC100041741
Downstream geneLOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik, Rxfp1, Tmem144, 1110032E23Rik, EG626797
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081A21.bB6Ng01-081A21.g
ACCDH896013DH896014
length1,1191,062
definitionDH896013|Mus musculus domesticus DNA, BAC clone: B6Ng01-081A21, 5' end.DH896014|Mus musculus domesticus DNA, BAC clone: B6Ng01-081A21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,331,854 - 79,332,982)(79,218,511 - 79,219,574)
sequence
gaattccataatcatggtttgctaataaagaattctttcctaagagcgca
attgaaatctggtaaatttgcagtatgcagggtatatggtatagttttca
aatagttgtttctaacctctttctttaaatgtagattgtagcaaagctgc
tgatttttaatttttcatttttttcctgaaaacgctgagaagccatcgaa
ttgttcccgagggatcttgggaatgtttgccagctgtatatgagaaatac
tctctcaaacctaagagaaagggtggcctggcctcgtcttgtcattggag
tggagaggaactgaagtaaacacttcagagccaattgtgctttgcagttt
cagatctgcaagtttgacttcagaagaaattgaaccatacgtcgtggggg
ctgggaggaactcaggtggagctggtcctgtgcctgggtcatgcccagcg
tccagccccagtgccaaaccacaccacactgtgatcagcagcacagcagg
gagaggagccgttgggtgaaaaccattttaaaaggaaaagctgcagattg
tctgacgtggcttaacgagttttctttagtgaactgttgtggagataagt
ggccccggccatggaaggtgactgatgcaaagccacttgtagatttaaag
acagagatactaaggtggccaactgcacaattccttagacttttgtaaaa
ggcccttaaaagaaaagtgtaggctctgggcgtgggaagtagttttcact
ctgtgctgcacatggaaactgtgaaaaacattctgcttaataggaaatgt
gttagttggacaggttgaatggagaagggagagaaaacaaaacacaacac
aaacaaatgacagcaaacaaatgaaaaccccagccaaagagctggccatc
acgggcttgtgactgctgggtgtgactcctctgttagtgttgaccacggg
ccaagttcctccctccccacgctccttcccagttcactgtttgtgtacaa
tgaggaattctcttttaccggctgtaggagtaagttccaccggtggcgat
ctgatatgcggatgtaaggcaccagagaatgctgtggaatttatactgtg
acattcgggagttttcctc
gaattccaggacagccagggctgtacagagaaaccctgtcttgaaaaaca
aagaaagaaacagacaaaagaatgcaggtagtatgaaaagggaatgggga
ataattaggaagaaggattaaattggatggtgaagaggaaggagcacaag
gtagacgttccctctatctgtggggaacgattactcacagtaaagacctt
tgaaaccgtcatggaaacctaaaggattcctaaactgtgcaggctggccc
tcaactcagagattcccctgcctctgcctcctgagtactgggatatgtat
atgtatatatatatatatatatatacacacacacacacacacacacacat
atatgtatctccataataggagaaggcaaacaataccccacctagacacc
aaaaaactattaaatataaaccccagaccaggaatggtttacctctttgg
ggattgtttattaggaggggtcccctcaaccttaaagcattctaggctac
tgctcttgcttctggttaccctctggaacttgacagtaagaccccatggc
tgaagagaacacacagttgagtcctagaacacggagaaatcaagctggta
ctgacctggaagctgcacccctactgcctggcttttcccagcgctggaag
gtgctatgggtgctcccggaacagaaagagacccattggaaaccctgtga
gctctaacgacagccaatctggcaagatacactgctggcacagtaaaggg
cctcactgtgtgagagtaaacaatcactgtttacaatgagattttcagga
gcactatgtaagatgaaactcatgtgtgccactgtgactgaaacccaaga
tgctgtgtcttgacaggtcgaggctctaggggagatctactatattatcc
tgctaagtggatacagttgggggacttttatcttcctcttttctgtatca
tgtgttactaatatttttatacaccttgattttaccatttcttaattgga
gattatatggtttttctattgctccactagcaaataaccagaaattcagc
catggatggagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_79331854_79332982
seq2: B6Ng01-081A21.b_45_1163 (reverse)

seq1  GAGGAAAACTTCCCGAAACTGTCACAGTATTAAATTCCCACAGCATTCCT  50
      ||||||||| |||||||  |||||||||| |||||| |||||||||||  
seq2  GAGGAAAAC-TCCCGAA--TGTCACAGTA-TAAATT-CCACAGCATTC--  43

seq1  TCTGTGTGCCCTTACATCCGCAAATCAGAATCGCCCACCGGTGGGAATTT  100
      |||| ||| ||||||||||||| ||||| |||| |||||||| |||| ||
seq2  TCTG-GTG-CCTTACATCCGCATATCAG-ATCG-CCACCGGT-GGAACTT  88

seq1  ACT-CTACAGCCGGTAAAAGAGAATTCCTCATTGTACACAAACAGTGAAC  149
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTACAGCCGGTAAAAGAGAATTCCTCATTGTACACAAACAGTGAAC  138

seq1  TGGGAAGGAGCGTGGGGAGGGAGGAACTTGG-CCGTGGTCAACACTAACA  198
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGGGAAGGAGCGTGGGGAGGGAGGAACTTGGCCCGTGGTCAACACTAACA  188

seq1  GAGGAGTCACACCCAGCAGTCACAAGCCCGTGATGGCCAGCTCTTTGGCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGTCACACCCAGCAGTCACAAGCCCGTGATGGCCAGCTCTTTGGCT  238

seq1  GGGGTTTTCATTTGTTTGCTGTCATTTGTTTGTGTTGTGTTTTGTTTTCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTTTCATTTGTTTGCTGTCATTTGTTTGTGTTGTGTTTTGTTTTCT  288

seq1  CTCCCTTCTCCATTCAACCTGTCCAACTAACACATTTCCTATTAAGCAGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTCTCCATTCAACCTGTCCAACTAACACATTTCCTATTAAGCAGA  338

seq1  ATGTTTTTCACAGTTTCCATGTGCAGCACAGAGTGAAAACTACTTCCCAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTTCACAGTTTCCATGTGCAGCACAGAGTGAAAACTACTTCCCAC  388

seq1  GCCCAGAGCCTACACTTTTCTTTTAAGGGCCTTTTACAAAAGTCTAAGGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGAGCCTACACTTTTCTTTTAAGGGCCTTTTACAAAAGTCTAAGGA  438

seq1  ATTGTGCAGTTGGCCACCTTAGTATCTCTGTCTTTAAATCTACAAGTGGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGCAGTTGGCCACCTTAGTATCTCTGTCTTTAAATCTACAAGTGGC  488

seq1  TTTGCATCAGTCACCTTCCATGGCCGGGGCCACTTATCTCCACAACAGTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATCAGTCACCTTCCATGGCCGGGGCCACTTATCTCCACAACAGTT  538

seq1  CACTAAAGAAAACTCGTTAAGCCACGTCAGACAATCTGCAGCTTTTCCTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAAGAAAACTCGTTAAGCCACGTCAGACAATCTGCAGCTTTTCCTT  588

seq1  TTAAAATGGTTTTCACCCAACGGCTCCTCTCCCTGCTGTGCTGCTGATCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATGGTTTTCACCCAACGGCTCCTCTCCCTGCTGTGCTGCTGATCA  638

seq1  CAGTGTGGTGTGGTTTGGCACTGGGGCTGGACGCTGGGCATGACCCAGGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTGGTGTGGTTTGGCACTGGGGCTGGACGCTGGGCATGACCCAGGC  688

seq1  ACAGGACCAGCTCCACCTGAGTTCCTCCCAGCCCCCACGACGTATGGTTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGACCAGCTCCACCTGAGTTCCTCCCAGCCCCCACGACGTATGGTTC  738

seq1  AATTTCTTCTGAAGTCAAACTTGCAGATCTGAAACTGCAAAGCACAATTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTTCTGAAGTCAAACTTGCAGATCTGAAACTGCAAAGCACAATTG  788

seq1  GCTCTGAAGTGTTTACTTCAGTTCCTCTCCACTCCAATGACAAGACGAGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGAAGTGTTTACTTCAGTTCCTCTCCACTCCAATGACAAGACGAGG  838

seq1  CCAGGCCACCCTTTCTCTTAGGTTTGAGAGAGTATTTCTCATATACAGCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCCACCCTTTCTCTTAGGTTTGAGAGAGTATTTCTCATATACAGCT  888

seq1  GGCAAACATTCCCAAGATCCCTCGGGAACAATTCGATGGCTTCTCAGCGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAACATTCCCAAGATCCCTCGGGAACAATTCGATGGCTTCTCAGCGT  938

seq1  TTTCAGGAAAAAAATGAAAAATTAAAAATCAGCAGCTTTGCTACAATCTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGAAAAAAATGAAAAATTAAAAATCAGCAGCTTTGCTACAATCTA  988

seq1  CATTTAAAGAAAGAGGTTAGAAACAACTATTTGAAAACTATACCATATAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAAAGAAAGAGGTTAGAAACAACTATTTGAAAACTATACCATATAC  1038

seq1  CCTGCATACTGCAAATTTACCAGATTTCAATTGCGCTCTTAGGAAAGAAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCATACTGCAAATTTACCAGATTTCAATTGCGCTCTTAGGAAAGAAT  1088

seq1  TCTTTATTAGCAAACCATGATTATGGAATTC  1129
      |||||||||||||||||||||||||||||||
seq2  TCTTTATTAGCAAACCATGATTATGGAATTC  1119

seq1: chr3_79218511_79219574
seq2: B6Ng01-081A21.g_69_1130

seq1  GAATTCCAGGACAGCCAGGGCTGTACAGAGAAACCCTGTCTTGAAAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTGTACAGAGAAACCCTGTCTTGAAAAACA  50

seq1  AAGAAAGAAACAGACAAAAGAATGCAGGTAGTATGAAAAGGGAATGGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAACAGACAAAAGAATGCAGGTAGTATGAAAAGGGAATGGGGA  100

seq1  ATAATTAGGAAGAAGGATTAAATTGGATGGTGAAGAGGAAGGAGCACAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTAGGAAGAAGGATTAAATTGGATGGTGAAGAGGAAGGAGCACAAG  150

seq1  GTAGACGTTCCCTCTATCTGTGGGGAACGATTACTCACAGTAAAGACCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACGTTCCCTCTATCTGTGGGGAACGATTACTCACAGTAAAGACCTT  200

seq1  TGAAACCGTCATGGAAACCTAAAGGATTCCTAAACTGTGCAGGCTGGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACCGTCATGGAAACCTAAAGGATTCCTAAACTGTGCAGGCTGGCCC  250

seq1  TCAACTCAGAGATTCCCCTGCCTCTGCCTCCTGAGTACTGGGATATGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTCAGAGATTCCCCTGCCTCTGCCTCCTGAGTACTGGGATATGTAT  300

seq1  ATGTATATATATATATATATATATACACACACACACACACACACACACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATATATATATATATATATATACACACACACACACACACACACACAT  350

seq1  ATATGTATCTCCATAATAGGAGAAGGCAAACAATACCCCACCTAGACACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTATCTCCATAATAGGAGAAGGCAAACAATACCCCACCTAGACACC  400

seq1  AAAAAACTATTAAATATAAACCCCAGACCAGGAATGGTTTACCTCTTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACTATTAAATATAAACCCCAGACCAGGAATGGTTTACCTCTTTGG  450

seq1  GGATTGTTTATTAGGAGGGGTCCCCTCAACCTTAAAGCATTCTAGGCTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGTTTATTAGGAGGGGTCCCCTCAACCTTAAAGCATTCTAGGCTAC  500

seq1  TGCTCTTGCTTCTGGTTACCCTCTGGAACTTGACAGTAAGACCCCATGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTGCTTCTGGTTACCCTCTGGAACTTGACAGTAAGACCCCATGGC  550

seq1  TGAAGAGAACACACAGTTGAGTCCTAGAACACGGAGAAATCAAGCTGGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGAACACACAGTTGAGTCCTAGAACACGGAGAAATCAAGCTGGTA  600

seq1  CTGACCTGGAAGCTGCACCCCTACTGCCTGGC-TTTCCCAGCGCTGGAAG  649
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTGACCTGGAAGCTGCACCCCTACTGCCTGGCTTTTCCCAGCGCTGGAAG  650

seq1  GTGCTATGGGTGCTCCCGGAACAGAAAGAGACCCATTGGAAACCCTGTGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTATGGGTGCTCCCGGAACAGAAAGAGACCCATTGGAAACCCTGTGA  700

seq1  GCTCTAACGACAGCCAACCTGGCAAGATACACTGCTGGCACAGTAAA-GG  748
      ||||||||||||||||| ||||||||||||||||||||||||||||| ||
seq2  GCTCTAACGACAGCCAATCTGGCAAGATACACTGCTGGCACAGTAAAGGG  750

seq1  CCTCACTGTGTGAGAGTAAACAATCACTGTTTACAATGAGA-TTTCAGGA  797
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CCTCACTGTGTGAGAGTAAACAATCACTGTTTACAATGAGATTTTCAGGA  800

seq1  GCACTATGTAAGATGAAACTCATGTGTGCCACTGTGACTGAAA-CCAAGA  846
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GCACTATGTAAGATGAAACTCATGTGTGCCACTGTGACTGAAACCCAAGA  850

seq1  TGCTGTGTCTTGACAGGTCGTAGGCTCTAGGGGAGAATCTACTATATTAT  896
      |||||||||||||||||||| |||||||||||||| ||||||||||||||
seq2  TGCTGTGTCTTGACAGGTCG-AGGCTCTAGGGGAG-ATCTACTATATTAT  898

seq1  CCTGCTAAGTGGATACAGTTGGGGGACTTTTATCTTCCTCCTTTTCTGTA  946
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCTGCTAAGTGGATACAGTTGGGGGACTTTTATCTTCCT-CTTTTCTGTA  947

seq1  TCATGTGTTTACTAATATTTTTATAACACCTTGATTTTTACCATTTCTAA  996
      ||||||| |||||||||||||||| ||||||||| ||||||||||||| |
seq2  TCATGTG-TTACTAATATTTTTAT-ACACCTTGA-TTTTACCATTTCTTA  994

seq1  AATGGAGATTATATTGGTTTTCTATTGCTCCAC-AGCAAATAACCAGAAA  1045
      | |||||||||||| | |||||||||||||||| ||||||||||||||||
seq2  ATTGGAGATTATATGGTTTTTCTATTGCTCCACTAGCAAATAACCAGAAA  1044

seq1  TTCAGCAATGTGATGGAGT  1064
      |||||| ||| ||||||||
seq2  TTCAGCCATG-GATGGAGT  1062