BAC Information

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BAC

Clone NameB6Ng01-081E04
Chromosome3 (Build37)
Map Location 19,567,911 - 19,658,336
singlet/doubletdoublet
Overlap geneTrim55, Crh
Upstream geneArmc1, Mtfr1, Pde7a, Dnajc5b, EG620290
Downstream geneLOC665002, LOC100039304, LOC100040237, 4632415L05Rik, Cp, Hps3, Hltf, Gyg, Cpa3, EG664965, LOC100040283, Cpb1, Agtr1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081E04.bB6Ng01-081E04.g
ACCDH896166DH896167
length1,081494
definitionDH896166|Mus musculus domesticus DNA, BAC clone: B6Ng01-081E04, 5' end.DH896167|Mus musculus domesticus DNA, BAC clone: B6Ng01-081E04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,567,911 - 19,569,007)(19,657,837 - 19,658,336)
sequence
gaattcttgtggccctgtccccaagatcgagggacaccaagtccgccaca
gagggagcaaaacgaataagtgaaacttgccattctaaagcgtttcctgt
gtgaaccacattggattacttaaaaatcatattttatcaaagcttcagag
ttccaattagagtttcaggggtgaaggccgaattttcacactccagggga
aggtttttggttttgtattttgtcacagtctgcagagaattatgttaaag
gccaaataggcaagaggagaacatgccccttttctgttaggtattagata
tggccgatctaatcaatggcctttgttcagttcacaaacagtttatgtaa
gttttaaatttttcattatttgggctgaatttggtggtgcatgcttttaa
acatagcattccagaggcagatggatctctgtgagtttgaagctaccctg
gtctaaatagtgagtcccagaaagccaggactacataaagaaaccttgtc
tcaaacaacaacaacagcaacagcaacagcaaagcaacagcagcagcaac
agcaacaacaacaagccaaaaaaaacaaaaaacaaccaatttttaaaaaa
atttttttaacagtttcatgggtataatatactttgatcatatcttcctc
ccaatatctctccatgaatattttcttcttcccaaagctttctcctactt
tctgtttttatattattgtattcccgtaggttgtttgcatgaactcatgt
gtggggctatttactgcagcatggacaacttagcagtggtaataattctg
aaaagaatctaccctctttcccagcagccattaactgccaatagctccta
tgtagcagaattttcccccaattaatttaaatattaatacaagaagccta
tgattggacagggaaaaggaaggcagatctaagagtttcagagacaggca
ggagagagagagaggagatagagaagagatgaacttatcatgtggcttca
tatagccacagtagctacaatatcctataaagaatagaatatggatagga
taatctaggtgggaaagctgtatcattatca
aactaagttataaggattaataattctttttcaaaagactgtctgattta
aggggaaaacctcccgtctattgcaaaggagagtctaggcttatggggag
ttatatagttttaagggtcacaacccaggtcgggaaaagggtggatagag
ctaataacaacaaggagaggaaatcaaagattcaaatatatgtggaaact
gtatgagaatgtttgcatggtgcttagaaatcttggctagagtttaatca
gtcattagaggacatggtgtgatttttttaaagatgtctctctctccacc
cctttgtttttctctgtgtctctgtctctttacctctgtctctttgcctc
tctgtctctctctctcatgtgcgttatgtgtatgattgtgttgatgtgtg
tatgtatgtatctatgtatgtgtgtgtgtatgcatatggaagacataagt
tgccattggatatgtttcgtagtcatgctctgccttaattttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_19567911_19569007
seq2: B6Ng01-081E04.b_47_1127

seq1  GAATTCTTGTGGCCCTGTCCCCAAGATCGAGGGACACCAAGTCCGCCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTGGCCCTGTCCCCAAGATCGAGGGACACCAAGTCCGCCACA  50

seq1  GAGGGAGCAAAACGAATAAGTGAAACTTGCCATTCTAAAGCGTTTCCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGCAAAACGAATAAGTGAAACTTGCCATTCTAAAGCGTTTCCTGT  100

seq1  GTGAACCACATTGGATTACTTAAAAATCATATTTTATCAAAGCTTCAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACCACATTGGATTACTTAAAAATCATATTTTATCAAAGCTTCAGAG  150

seq1  TTCCAATTAGAGTTTCAGGGGTGAAGGCCGAATTTTCACACTCCAGGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATTAGAGTTTCAGGGGTGAAGGCCGAATTTTCACACTCCAGGGGA  200

seq1  AGGTTTTTGGTTTTGTATTTTGTCACAGTCTGCAGAGAATTATGTTAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTTGGTTTTGTATTTTGTCACAGTCTGCAGAGAATTATGTTAAAG  250

seq1  GCCAAATAGGCAAGAGGAGAACATGCCCCTTTTCTGTTAGGTATTAGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAATAGGCAAGAGGAGAACATGCCCCTTTTCTGTTAGGTATTAGATA  300

seq1  TGGCCGATCTAATCAATGGCCTTTGTTCAGTTCACAAACAGTTTATGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCGATCTAATCAATGGCCTTTGTTCAGTTCACAAACAGTTTATGTAA  350

seq1  GTTTTAAATTTTTCATTATTTGGGCTGAATTTGGTGGTGCATGCTTTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAAATTTTTCATTATTTGGGCTGAATTTGGTGGTGCATGCTTTTAA  400

seq1  ACATAGCATTCCAGAGGCAGATGGATCTCTGTGAGTTTGAAGCTACCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGCATTCCAGAGGCAGATGGATCTCTGTGAGTTTGAAGCTACCCTG  450

seq1  GTCTAAATAGTGAGTCCCAGAAAGCCAGGACTACATAAAGAAACCTTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAAATAGTGAGTCCCAGAAAGCCAGGACTACATAAAGAAACCTTGTC  500

seq1  TCAAACAACAACAACAGCAACAGCAACAGCAAAGCAACAGCAGCAGCAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACAACAACAACAGCAACAGCAACAGCAAAGCAACAGCAGCAGCAAC  550

seq1  AGCAACAACAACAAGCCAAAAAAAACAAAAAACAACCAATTTTTAAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACAACAACAAGCCAAAAAAAACAAAAAACAACCAATTTTTAAAAAA  600

seq1  ATTTTTTTAACAGTTTCATGGGTATAATATACTTTGATCATATCTTCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTAACAGTTTCATGGGTATAATATACTTTGATCATATCTTCCTC  650

seq1  CCAATATCTCTCCATGAATATTTTCTTCTTCCCAAAGCTTTCTCCTACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATATCTCTCCATGAATATTTTCTTCTTCCCAAAGCTTTCTCCTACTT  700

seq1  TCTGTTTTTATATTATTGTATTCCCGTAGGTTGTTTGCATGAACTCATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTTATATTATTGTATTCCCGTAGGTTGTTTGCATGAACTCATGT  750

seq1  GTGGGGCTATTTACTGCAGCATGGACAACTTAGCAGTGGTAATAATTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGCTATTTACTGCAGCATGGACAACTTAGCAGTGGTAATAATTCTG  800

seq1  AAAAGAATCTACCCTCTTTCCCAGCAGCCATTAACTGCCAATAGCTCCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAATCTACCCTCTTTCCCAGCAGCCATTAACTGCCAATAGCTCCTA  850

seq1  TGTAGCAGAATTTTCCCCCAATTAATTTAAATATTAATACAAGAAGCCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCAGAATTTTCCCCCAATTAATTTAAATATTAATACAAGAAGCCTA  900

seq1  TGATTGGACAGGGAAAAGGAAGGCAGATCTAAGAGTTTCAGAGACAGGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||  ||
seq2  TGATTGGACAGGGAAAAGGAAGGCAGATCTAAGAGTTTCAGAGACA--GG  948

seq1  CAGG-GAGAGAGGAGGAGGAGGAGATAAGAGAAGAGGATGAACCTTATCC  999
      |||| |||||||      |||||||| |||||||| |||||| ||||| |
seq2  CAGGAGAGAGAG-----AGAGGAGAT-AGAGAAGA-GATGAA-CTTAT-C  989

seq1  ATGTGGCTTCATATAGCCACAGGTAGCTACAAATATCATA-AAAGGATAG  1048
      ||||||||||||||||||||| |||||||| |||||| || |||| ||||
seq2  ATGTGGCTTCATATAGCCACA-GTAGCTAC-AATATCCTATAAAGAATAG  1037

seq1  AATAATTGGGATAAGGTATAATCTAGGTGGGAAGCTTGTATCATTATCA  1097
      ||||    |||||  | ||||||||||||||||   |||||||||||||
seq2  AATA---TGGATA--GGATAATCTAGGTGGGAAAGCTGTATCATTATCA  1081

seq1: chr3_19657837_19658336
seq2: B6Ng01-081E04.g_68_567 (reverse)

seq1  TCAAAATTAAGGCAGAGCATGACTAAGAAACATATCCAATGGCAACTTAT  50
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCAAAATTAAGGCAGAGCATGACTACGAAACATATCCAATGGCAACTTAT  50

seq1  GTCTTCCATATGCATACACACACACATACATAGATACATACATACACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCCATATGCATACACACACACATACATAGATACATACATACACACA  100

seq1  TCAACACAATCATACACATAACGCACATGAGAGAGAGAGACAGAGAGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACACAATCATACACATAACGCACATGAGAGAGAGAGACAGAGAGGCA  150

seq1  AAGAGACAGAGGTAAAGAGACAGAGACACAGAGAAAAACAAAGGGGTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACAGAGGTAAAGAGACAGAGACACAGAGAAAAACAAAGGGGTGGA  200

seq1  GAGAGAGACATCTTTAAAAAAATCACACCATGTCCTCTAATGACTGATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGACATCTTTAAAAAAATCACACCATGTCCTCTAATGACTGATTA  250

seq1  AACTCTAGCCAAGATTTCTAAGCACCATGCAAACATTCTCATACAGTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTAGCCAAGATTTCTAAGCACCATGCAAACATTCTCATACAGTTTC  300

seq1  CACATATATTTGAATCTTTGATTTCCTCTCCTTGTTGTTATTAGCTCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATATTTGAATCTTTGATTTCCTCTCCTTGTTGTTATTAGCTCTAT  350

seq1  CCACCCTTTTCCCGACCTGGGTTGTGACCCTTAAAACTATATAACTCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCTTTTCCCGACCTGGGTTGTGACCCTTAAAACTATATAACTCCCC  400

seq1  ATAAGCCTAGACTCTCCTTTGCAATAGACGGGAGGTTTTCCCCTTAAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCCTAGACTCTCCTTTGCAATAGACGGGAGGTTTTCCCCTTAAATC  450

seq1  AGACAGTCTTTTGAAAAAGAATTATTAATCCTTATAACTTAGTTGAATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGTCTTTTGAAAAAGAATTATTAATCCTTATAACTTAGTTGAATTC  500