BAC Information

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BAC

Clone NameB6Ng01-081G01
Chromosome3 (Build37)
Map Location 30,801,868 - 30,877,126
singlet/doubletdoublet
Overlap genePhc3, LOC100040809
Upstream geneEvi1, Mds1, LOC100040727, LOC100040734, LOC100040749, Arpm1, Mynn, Lrrc34, 4930558O21Rik, E230002P03Rik, Samd7, Tloc1, Gpr160
Downstream genePrkci, Skil, Cldn11, Slc7a14, LOC625125, Kcnmb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081G01.bB6Ng01-081G01.g
ACCDH896252DH896253
length1,112520
definitionDH896252|Mus musculus domesticus DNA, BAC clone: B6Ng01-081G01, 5' end.DH896253|Mus musculus domesticus DNA, BAC clone: B6Ng01-081G01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,876,008 - 30,877,126)(30,801,868 - 30,802,368)
sequence
gaattctctgtttaactctgtgacccaactttaaattggattatttgggt
tgttggtatctagcttcttgagttctttattcattttagatattagtcct
gggtcagagatacaaccttcttttactaaactgagaaataatgtttctgt
cccctagttgttgcggtccccttggaaaggttacacatcaaaacaacagt
tgagctgggcagtggtggcacattcctttaatcccaacacttaggaggca
gaggcaggtgtatttctgaattcaaggccagtctggtctacagagtgagt
tccaggacagccagggctatacagagaaaccctgtctcaaaaaacaaaaa
caaaaacaacaacaacaacaacaaaaaagttgagatcatgtaatgatcaa
agcaatagaccaacaccaatccacctgtaaatccacgcaaaaagggagag
ggagttagttatacaaggccaggttagagaactaaaaaagaaaatggagc
agaaactctttgatacgtaatctcagaagataggtttgtgtggcctgaaa
cagaagcagtctgtttcatttagaagagatgttcctcgggactaacataa
aaacccttatcaaacaccttatcaggagctaactgaaagagcccttgttg
aaaagcaatggtctcgacctaaagttcaaagacagccagaaacctcattt
cacacatgatagggtaagggctgttattagcttttcctaccttgcttttc
ctcagcagaaggcaggattgatgaactccaagacccacagcagtctagaa
tcataagactctgagcccctcctcccacactgggaactttttgatttgag
aaattcaatcaactttcagttcctgtataaagccttccttgcatctcaaa
cagcctttaattggttggcaataaaattcctgaatcaggcctttcactca
ttgagtacatttatgaggcacacacacacacacacacacacacacacatt
tcctgcagtaaagaaccaggtagaaaacataaactacaactaagtagctc
ccagtagcaaagctctgtcaatttgccttaaacagtgaccaagttcaggt
atctcagtgggg
gaattccttaagggcttggttcaatgagttcaatttgttaaatttgaata
acaaaacacatttactcttcctaatacttatttgtactcagctaaactca
aaacccagctttgatatgaaacaaaacgctctgaatggagtgacatatca
gtactgaagcctggagttggaacagttcatgtcacgggtcattctgcttt
acgccaagaaaataagtgggcttgggcttactggagtccaccagtcagca
actgtcctgcagtgccttccttccctttatgactggctgcaaaactgagc
caactgtcatatctgactggatatgcctctgtagtctggccactcgatca
taacaaactcctacatttttgacagattctctcccctctgattatcatct
tcaaaaaatccaggattactcaacttggggtaccagtgggtactattaat
atcaaccactccctcagaagcaggggacaggggtggataaaaaaaaaaaa
ataccctaaattttgatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_30876008_30877126
seq2: B6Ng01-081G01.b_46_1157 (reverse)

seq1  CCCCACTGAATTACCTTGAACTTTGTCACATGCTTTTAAGCAAATATTGA  50
      |||||||||  |||| ||||||| ||||| ||  ||||||  || |||||
seq2  CCCCACTGAGATACC-TGAACTTGGTCAC-TG--TTTAAGGCAA-ATTGA  45

seq1  CAGAGCTCTGCTACTGTGAGCTACTTAAGTGTTAGGTTTATGTTTTCCTA  100
      ||||||| |||||||| ||||||||||  |||   ||||||||||| |||
seq2  CAGAGCTTTGCTACTGGGAGCTACTTAGTTGT--AGTTTATGTTTT-CTA  92

seq1  CCTTGGTCTCTACTGCAGGAATGTGTGTGTGTGTGTGTGTGTGTGTGTGT  150
      ||| | ||| |||||||||||  |||||||||||||||||||||||||||
seq2  CCTGGTTCTTTACTGCAGGAA-ATGTGTGTGTGTGTGTGTGTGTGTGTGT  141

seq1  GTGCCTTCAATAAATGTACTCAATGAGTGAAAGG-CTGATTCAGGAATTT  199
      ||||||   ||||||||||||||||||||||||| |||||||||||||||
seq2  GTGCCT--CATAAATGTACTCAATGAGTGAAAGGCCTGATTCAGGAATTT  189

seq1  TATTGCCAACCAA-TAAAGGCTGTTTGAGATGCAAGGAAGGCTTTATACA  248
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TATTGCCAACCAATTAAAGGCTGTTTGAGATGCAAGGAAGGCTTTATACA  239

seq1  GGAACTGAAAGTTGATTGAATTTCTCAAATC-AAAAGTTCCCAGTGTGGG  297
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGAACTGAAAGTTGATTGAATTTCTCAAATCAAAAAGTTCCCAGTGTGGG  289

seq1  AGGAGGGGCTCAGAGTCTTATGATTCTAGACTGCTGTGGGTCTTGGAGTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGGCTCAGAGTCTTATGATTCTAGACTGCTGTGGGTCTTGGAGTT  339

seq1  CATCAATCCTGCCTTCTGCTGAGGAAAAGCAAGGTAGGAAAAGCTAATAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAATCCTGCCTTCTGCTGAGGAAAAGCAAGGTAGGAAAAGCTAATAA  389

seq1  CAGCCCTTACCCTATCATGTGTGAAATGAGGTTTCTGGCTGTCTTTGAAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTTACCCTATCATGTGTGAAATGAGGTTTCTGGCTGTCTTTGAAC  439

seq1  -TTAGGTCGAGACCATTGCTTTTCAACAAGGGCTCTTTCAGTTAGCTCCT  496
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGTCGAGACCATTGCTTTTCAACAAGGGCTCTTTCAGTTAGCTCCT  489

seq1  GATAAGGTGTTTGATAAGGGTTTTTATGTTAGTCCCGAGGAACATCTCTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGGTGTTTGATAAGGGTTTTTATGTTAGTCCCGAGGAACATCTCTT  539

seq1  CTAAATGAAACAGACTGCTTCTGTTTCAGGCCACACAAACCTATCTTCTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATGAAACAGACTGCTTCTGTTTCAGGCCACACAAACCTATCTTCTG  589

seq1  AGATTACGTATCAAAGAGTTTCTGCTCCATTTTCTTTTTTAGTTCTCTAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTACGTATCAAAGAGTTTCTGCTCCATTTTCTTTTTTAGTTCTCTAA  639

seq1  CCTGGCCTTGTATAACTAACTCCCTCTCCCTTTTTGCGTGGATTTACAGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCCTTGTATAACTAACTCCCTCTCCCTTTTTGCGTGGATTTACAGG  689

seq1  TGGATTGGTGTTGGTCTATTGCTTTGATCATTACATGATCTCAACTTTTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTGGTGTTGGTCTATTGCTTTGATCATTACATGATCTCAACTTTTT  739

seq1  TGTTGTTGTTGTTGTTGTTTTTGTTTTTGTTTTTTGAGACAGGGTTTCTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTGTTGTTGTTGTTTTTGTTTTTGTTTTTTGAGACAGGGTTTCTC  789

seq1  TGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGACTGGCCTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGACTGGCCTT  839

seq1  GAATTCAGAAATACACCTGCCTCTGCCTCCTAAGTGTTGGGATTAAAGGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAATACACCTGCCTCTGCCTCCTAAGTGTTGGGATTAAAGGA  889

seq1  ATGTGCCACCACTGCCCAGCTCAACTGTTGTTTTGATGTGTAACCTTTCC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCCACCACTGCCCAGCTCAACTGTTGTTTTGATGTGTAACCTTTCC  939

seq1  AAGGGGACCGCAACAACTAGGGGACAGAAACATTATTTCTCAGTTTAGTA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGACCGCAACAACTAGGGGACAGAAACATTATTTCTCAGTTTAGTA  989

seq1  AAAGAAGGTTGTATCTCTGACCCAGGACTAATATCTAAAATGAATAAAGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGGTTGTATCTCTGACCCAGGACTAATATCTAAAATGAATAAAGA  1039

seq1  ACTCAAGAAGCTAGATACCAACAACCCAAATAATCCAATTTAAAGTTGGG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGAAGCTAGATACCAACAACCCAAATAATCCAATTTAAAGTTGGG  1089

seq1  TCACAGAGTTAAACAGAGAATTC  1119
      |||||||||||||||||||||||
seq2  TCACAGAGTTAAACAGAGAATTC  1112

seq1: chr3_30801868_30802368
seq2: B6Ng01-081G01.g_71_590

seq1  GAATTCCTTAAGGGCTTGGTTCAATGAGTTCAATTTGTTAAATTTGAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAAGGGCTTGGTTCAATGAGTTCAATTTGTTAAATTTGAATA  50

seq1  ACAAAACACATTTACTCTTCCTAATACTTATTTGTACTCAGCTAAACTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACACATTTACTCTTCCTAATACTTATTTGTACTCAGCTAAACTCA  100

seq1  AAACCCAGCTTTGATATGAAACAAAACGCTCTGAATGGAGTGACATATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCAGCTTTGATATGAAACAAAACGCTCTGAATGGAGTGACATATCA  150

seq1  GTACTGAAGCCTGGAGTTGGAACAGTTCATGTCACGGGTCATTCTGCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGAAGCCTGGAGTTGGAACAGTTCATGTCACGGGTCATTCTGCTTT  200

seq1  ACGCCAAGAAAATAAGTGGGCTTGGGCTTACTGGAGTCCACCAGTCAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCAAGAAAATAAGTGGGCTTGGGCTTACTGGAGTCCACCAGTCAGCA  250

seq1  ACTGTCCTGCAGTGCCTTCCTTCCCTTTATGACTGGCTGCAAAACTGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCCTGCAGTGCCTTCCTTCCCTTTATGACTGGCTGCAAAACTGAGC  300

seq1  CAACTGTCATATCTGACTGGATATGCCTCTGTAGTCTGGCCACTCGATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGTCATATCTGACTGGATATGCCTCTGTAGTCTGGCCACTCGATCA  350

seq1  TAACAAACTCCTACA-TTTTGACAGATTCTCT-CCCTCTGATTATCATCT  398
      ||||||||||||||| |||||||||||||||| |||||||||||||||||
seq2  TAACAAACTCCTACATTTTTGACAGATTCTCTCCCCTCTGATTATCATCT  400

seq1  TC-AAAAATCCAGGATTACTCAACTT-GGGTACCAGT-GGTACTATTAAT  445
      || ||||||||||||||||||||||| |||||||||| ||||||||||||
seq2  TCAAAAAATCCAGGATTACTCAACTTGGGGTACCAGTGGGTACTATTAAT  450

seq1  ATCAA-CACT-CCTCAG-AGCA-GGGACAGGTG-------ATAAAGAGAA  484
      ||||| |||| |||||| |||| |||||||| |       | ||| | ||
seq2  ATCAACCACTCCCTCAGAAGCAGGGGACAGGGGTGGATAAAAAAAAAAAA  500

seq1  ATA-CCTAA--TTTGATTTT  501
      ||| |||||  |||||||||
seq2  ATACCCTAAATTTTGATTTT  520