BAC Information

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BAC

Clone NameB6Ng01-081L02
Chromosome3 (Build37)2 (Build37)
Map Location 114,106,088 - 114,106,811142,776,874 - 142,777,216
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100043686, LOC100043688, LOC100043207, Amy1, Rnpc3, Col11a1
Downstream geneLOC100043220, Olfm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081L02.bB6Ng01-081L02.g
ACCDH896465DH896466
length725979
definitionDH896465|Mus musculus domesticus DNA, BAC clone: B6Ng01-081L02, 5' end.DH896466|Mus musculus domesticus DNA, BAC clone: B6Ng01-081L02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(114,106,088 - 114,106,811)(142,776,874 - 142,777,216)
sequence
gaattcttttaaattaaatgaattgtgacaagaattcaagaggggatgtc
atcagtcaaaggagtattgatgagatgtcagatgaagatgagaaacagct
acttggaagttgtgacaaggtcaccatgacacagaataaaagaaggtggc
tgcgttgggtacattctacagggttgtgagaaggtcacatttaagggtga
aggagttttggagaagtgacatctacaaagtggagttctgaggttactgc
atggctgctttgggtcactttcaatgtaatttgggaacaaaggaaagcat
acaaagctatagtttttttgttttgtttttttttttttttagtatagtct
gccaagtatacgtacaaaggacaaagctgttccaagttttattgtaacaa
tttataaaccagtccaaaaccaaaactttctagaaagtgcacgacattaa
caaaatgcttatgttagtgatttattcttagggtgaaggaaaaaagctga
ggttgcaaattttcttaattgcaggacgtacagaaagttgcaaatagaag
aaatggagttcagagcagagagaaagactcttctgagaaaattctagtac
cacagaacctgatgtctataaatacagagaaagtgagctaaacaaatgct
accatgcatgcatggctctatcttccagatttttgatatgctacaaccaa
ggggagtgggtgggtaaggggagtg
gaattctttagctctgtaccccatttttaatggggttatttgagtttctg
gagtcctgctttttgagctctttgtatatattggatattagtcccttatc
atatttaggattggtaaaaatcctttcccaatctgttggtggcctttttg
tcttattgacagtgtcttttgccttacagaagctttgaaattttatgagg
tcccatttgtcaattcttgatattacagcacaagccattactgttctgtt
taggaattttttcccctgtgcccatatcttcgaggcttttccccactttc
tcctctattaatttcagtgtctctggttttatgtggaggtctttgatcca
cttagacttgagctttgtataaggaggtaagaatggatcaattcgccttc
ttctattcaaagacttacatttattgtcatatatgtttttcaattgcttt
gtaagagttacactaagatattttatttatatcatttgttcctattgaga
actgtattgtttctctgattttgtttttcagtctgtttataatttatgta
tatgagggctactgattattttgtgttaatttgtaccctgtcacttctct
gaaggtgtttttcagctgtagttgttccctggtagaagttaatacaaacc
tatcatctgaaaagagtggtattgtgaattcttcctttccaaatttttcc
ccttgatctcctttagttgtcttttttgttcttattaaatttgagtgcta
tattgagtaaaatggagagggtggcaagccttgtcttattcctgatttta
gtaaaattgctttaagtttctctccatttaatgtgattttggctgggctg
tatgttgcttttaatatatttaggtatatcccttttatccttgatctctt
caagacatttgccataaaggacagctggattttatcaaaagagttttctt
catctgatgaaatgtgttttttttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_114106088_114106811
seq2: B6Ng01-081L02.b_42_766

seq1  GAATTCTTTTAAATTAAATGAATTGTGACAAGAATTCAAGAGGGGATGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTAAATTAAATGAATTGTGACAAGAATTCAAGAGGGGATGTC  50

seq1  ATCAGTCAAAGGAGTATTGATGAGATGTCAGATGAAGATGAGAAACAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTCAAAGGAGTATTGATGAGATGTCAGATGAAGATGAGAAACAGCT  100

seq1  ACTTGGAAGTTGTGACAAGGTCACCATGACACAGAATAAAAGAAGGTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGAAGTTGTGACAAGGTCACCATGACACAGAATAAAAGAAGGTGGC  150

seq1  TGCGTTGGGTACATTCTACAGGGTTGTGAGAAGGTCACATTTAAGGGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTTGGGTACATTCTACAGGGTTGTGAGAAGGTCACATTTAAGGGTGA  200

seq1  AGGAGTTTTGGAGAAGTGACATCTACAAAGTGGAGTTCTGAGGTTACTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTTTGGAGAAGTGACATCTACAAAGTGGAGTTCTGAGGTTACTGC  250

seq1  ATGGCTGCTTTGGGTCACTTTCAATGTAATTTGGGAACAAAGGAAAGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGCTTTGGGTCACTTTCAATGTAATTTGGGAACAAAGGAAAGCAT  300

seq1  ACAAAGCTATAGTTTTTTTGTTTTGTTTTTTTTTTTTTTTAGTATAGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCTATAGTTTTTTTGTTTTGTTTTTTTTTTTTTTTAGTATAGTCT  350

seq1  GCCAAGTATACGTACAAAGGACAAAGCTGTTCCAAGTTTTATTGTAACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGTATACGTACAAAGGACAAAGCTGTTCCAAGTTTTATTGTAACAA  400

seq1  TTTATAAACCAGTCCAAAACCAAAACTTTCTAGAAAGTGCACGACATTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAACCAGTCCAAAACCAAAACTTTCTAGAAAGTGCACGACATTAA  450

seq1  CAAAATGCTTATGTTAGTGATTTATTCTTAGGGTGAAGGAAAAAAGCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGCTTATGTTAGTGATTTATTCTTAGGGTGAAGGAAAAAAGCTGA  500

seq1  GGTTGCAAATTTTCTTAATTGCAGGACGTACAGAAAGTTGCAAATAGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCAAATTTTCTTAATTGCAGGACGTACAGAAAGTTGCAAATAGAAG  550

seq1  AAATGGAGTTCAGAGCAGAGAGAAAGACTCTTCTGAGAAAATTCTAGTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGAGTTCAGAGCAGAGAGAAAGACTCTTCTGAGAAAATTCTAGTAC  600

seq1  CACAGAACCTGATGTCTATAAATACAGAGAAAGTGAGCTAAACAAATGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAACCTGATGTCTATAAATACAGAGAAAGTGAGCTAAACAAATGCT  650

seq1  ACCATGCATGCATGGCTCTATCTTCCAGATTTTTGATATGCTACAACCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGCATGCATGGCTCTATCTTCCAGATTTTTGATATGCTACAACCAA  700

seq1  GGGGAGTGGGTGGGT-AGGGGAGTG  724
      ||||||||||||||| |||||||||
seq2  GGGGAGTGGGTGGGTAAGGGGAGTG  725

seq1: chr2_142776874_142777216
seq2: B6Ng01-081L02.g_86_428 (reverse)

seq1  TCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAA  50
      |||| |||||||||||||| || || ||||||||||||||||||||||||
seq2  TCAAGTCTAAGTGGATCAAAGACCTCCACATAAAACCAGAGACACTGAAA  50

seq1  CTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGG-  99
       | |||||||||||||||||||||||||| ||||||||||||||||||| 
seq2  TTAATAGAGGAGAAAGTGGGGAAAAGCCTCGAAGATATGGGCACAGGGGA  100

seq1  ACAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATT  149
      | |||||||| |||||||||| ||||||||||||||||| ||| ||||||
seq2  AAAAATTCCTAAACAGAACAGTAATGGCTTGTGCTGTAATATCAAGAATT  150

seq1  GACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACAC  199
      |||||||||||||| || ||| | ||||| ||||| ||||||||||||||
seq2  GACAAATGGGACCTCATAAAATTTCAAAGCTTCTGTAAGGCAAAAGACAC  200

seq1  CGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTACCT  249
       ||||||||||||||||| ||||||||||||||||||||||| |||||| 
seq2  TGTCAATAAGACAAAAAGGCCACCAACAGATTGGGAAAGGATTTTTACCA  250

seq1  ATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAG  299
      |||||||||  |||| ||||||||||||||| ||||| ||||| ||||| 
seq2  ATCCTAAATATGATAAGGGACTAATATCCAATATATACAAAGAGCTCAAA  300

seq1  AAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAAATGGGG  343
      |||  ||||| |||||| ||||||||||||||| ||||||||||
seq2  AAGCAGGACTCCAGAAACTCAAATAACCCCATT-AAAAATGGGG  343