BAC Information

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BAC

Clone NameB6Ng01-081O10
Chromosome3 (Build37)
Map Location 5,577,429 - 5,578,534
singlet/doubletsinglet
Overlap geneEG620382
Upstream geneLOC620283, Zfhx4, Pxmp3
Downstream geneEG667759, LOC100041165, LOC100041193, EG620570, LOC100041214, LOC383818
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081O10.bB6Ng01-081O10.g
ACCDH896614DH896615
length9161,096
definitionDH896614|Mus musculus domesticus DNA, BAC clone: B6Ng01-081O10, 5' end.DH896615|Mus musculus domesticus DNA, BAC clone: B6Ng01-081O10, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttttgctctgagccccatttttcaatggggttatttgatt
ttctggagtccaccttcttcagttctttatatatattggatattagtccc
ttatctgatttaggataggtaaaggtcctttcctaatctgttggtggcca
ttttgtcttattgacggtgtcctttgccttacagaagctttgcaatttta
tgaggtcccatttgtcgattcttgatcttacagcacaagccattgctgtt
ctattcaggaatttctcccctgtgcccatatcttccaggcttttccccac
tttctcctctataagtttcactgtctctggttttatgttgtgttccttaa
tccacttagatttgaccttagtacaaggagataggaatggatcaattcgc
attcttctacatgataaccgccagttgtgccagcacgatttgttgaaaat
gctgtcttttttccactggatggttttagctcccatgtcaaagatcaagt
gaccataggtgtgtgggttcgtttctggatcttcaattctatttcattgg
tctacttgttcccttactacttttaatattctttcttgtttttttttttt
ttttttttttgcatttagtgttttgcctattatgtgacagggggaatgtt
tttctggtccaattgatctggagttctgtaggcttcttttatgtttacgt
gcatctctttctttaggttagggaagctttcttctacaattttgttgaag
atatttactggccctttgagttggggaatctttactcttttctataccta
gacctactatccttaggttggtcttctcattgtgtcctgaatttcctgaa
tattttgggttaggagctgatgccaggggactccatacccaatagcagca
gggaaatctagtgtct

gaattctctttgaagagcaaggctttgacttagttgtgtaggaaggtagc
ccaaggtaggctgtgatagactgtttaggttttggtgttttttgcttttg
atacgggcttttgcaatgtagctctatggttggcctcaaagcacttctgt
ctcagctgctatgtgctgggaagacaactgcatattttcttgcctagttc
acttgatttttatgaggacaaaggtgaaattaaaaaaaaataaaataaaa
atgggaccagggagaaggctcaggaatgaaggtactttctgccaagcaga
agggacaaatttcatcctagatactcaaatggaaagatcacctgctcttg
aatccttcactatgtctcccccatataagcacatgcacacacacaatagc
aattacatataaacaaacacatcacacacatgtgcacacacaataatggc
tagagaagacattttcagaaagcatctctagttcaaagagttttagtagg
tctcatgaacacacatcacagtatctccataacaaagatcccagctgcac
gagaaatttgaattatattagatgattcttaagaatgccaggaagcatag
catttaaaattactgctgaaaatatttaaaatcaggatatatttatatag
tgtacttcattaatctttgtagtgagctagtagtttcagaaaacttgttt
ttattattttaaaacttgccttaaaaacatatccactcatttattgaaca
aaaacctgagctgggctttattcctgggccaggaatattgctagacagtg
ttaatgagaaaaaaagccaaagagaagacagagatggcctatttctagga
gctaataaggacctgttggtcactatgaagataataagcaaggcatatca
tattttgcatttgtaaattcaacacattaatattttaccagaattattct
tacagatgttacaaggatcttatgaagacttgactgtggtccttttagaa
gtactggaaaaatttaatatatttcatttactatgagatttagaagaaaa
tgattatctttttacctttaagatcaaagaaacatggcatctctat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_5577429_5578534
seq2: B6Ng01-081O10.g_69_1164

seq1  GAATTCTCTTTGAAGAGCAAGGCTTTGACTTAGTTGTGTAGGAAGGTAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTGAAGAGCAAGGCTTTGACTTAGTTGTGTAGGAAGGTAGC  50

seq1  CCAAGGTAGGCTGTGATAGACTGTTTAGGTTTTGGTGTTTTTTGCTTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGTAGGCTGTGATAGACTGTTTAGGTTTTGGTGTTTTTTGCTTTTG  100

seq1  ATACGGGCTTTTGCAATGTAGCTCTATGGTTGGCCTCAAAGCACTTCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGGGCTTTTGCAATGTAGCTCTATGGTTGGCCTCAAAGCACTTCTGT  150

seq1  CTCAGCTGCTATGTGCTGGGAAGACAACTGCATATTTTCTTGCCTAGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTGCTATGTGCTGGGAAGACAACTGCATATTTTCTTGCCTAGTTC  200

seq1  ACTTGATTTTTATGAGGACAAAGGTGAAATTAAAAAAAAATAAAATAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGATTTTTATGAGGACAAAGGTGAAATTAAAAAAAAATAAAATAAAA  250

seq1  ATGGGACCAGGGAGAAGGCTCAGGAATGAAGGTACTTTCTGCCAAGCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGACCAGGGAGAAGGCTCAGGAATGAAGGTACTTTCTGCCAAGCAGA  300

seq1  AGGGACAAATTTCATCCTAGATACTCAAATGGAAAGATCACCTGCTCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACAAATTTCATCCTAGATACTCAAATGGAAAGATCACCTGCTCTTG  350

seq1  AATCCTTCACTATGTCTCCCCCATATAAGCACATGCACACACACAATAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTTCACTATGTCTCCCCCATATAAGCACATGCACACACACAATAGC  400

seq1  AATTACATATAAACAAACACATCACACACATGTGCACACACAATAATGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACATATAAACAAACACATCACACACATGTGCACACACAATAATGGC  450

seq1  TAGAGAAGACATTTTCAGAAAGCATCTCTAGTTCAAAGAGTTTTAGTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAGACATTTTCAGAAAGCATCTCTAGTTCAAAGAGTTTTAGTAGG  500

seq1  TCTCATGAACACACATCACAGTATCTCCATAACAAAGATCCCAGCTGCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGAACACACATCACAGTATCTCCATAACAAAGATCCCAGCTGCAC  550

seq1  GAGAAATTTGAATTATATTAGATGATTCTTAAGAATGCCAGGAAGCATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATTTGAATTATATTAGATGATTCTTAAGAATGCCAGGAAGCATAG  600

seq1  CATTTAAAATTACTGCTGAAAATATTTAAAATCAGGATATATTTATATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAAAATTACTGCTGAAAATATTTAAAATCAGGATATATTTATATAG  650

seq1  TGTACTTCATTAATCTTTGTAGTGAGCTAGTAGTTTCAGAAAACTTGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTCATTAATCTTTGTAGTGAGCTAGTAGTTTCAGAAAACTTGTTT  700

seq1  TTATTATTTTAAAACTTGCCTTAAAAACATATCCACTCATTTATTGAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTTTAAAACTTGCCTTAAAAACATATCCACTCATTTATTGAACA  750

seq1  AAAACCTGAGCTGGGCTTTATTCCTGGGCCAGGAATATTGCTAGACAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTGAGCTGGGCTTTATTCCTGGGCCAGGAATATTGCTAGACAGTG  800

seq1  TTAATGAGAAAAAAAGCCAAAGAGAAGACAGAGATGGCCTATTTCTAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGAGAAAAAAAGCCAAAGAGAAGACAGAGATGGCCTATTTCTAGGA  850

seq1  GCTAATAAGGACCTGTTTGGTCACTATGAAGATAATAAGCAAGGCATATC  900
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GCTAATAAGGACCTG-TTGGTCACTATGAAGATAATAAGCAAGGCATATC  899

seq1  ATATTTTGCATTTGTAAATTCAACACATTAATATTTTAACCAAGAATTAT  950
      ||||||||||||||||||||||||||||||||||||||  | ||||||||
seq2  ATATTTTGCATTTGTAAATTCAACACATTAATATTTTA--CCAGAATTAT  947

seq1  TCTTACAGATGTACAAAGGATCTTATGAAGACTTGACTGTGGTCTTTTAA  1000
      ||||||||||||   ||||||||||||||||||||||||||||| ||| |
seq2  TCTTACAGATGTTACAAGGATCTTATGAAGACTTGACTGTGGTCCTTTTA  997

seq1  GAAGTACT-GAAAAAATTAATATATTTCATTTACTATGAGAATTTAAAGA  1049
      |||||||| |||||| ||||||||||||||||||||||||| ||   |||
seq2  GAAGTACTGGAAAAATTTAATATATTTCATTTACTATGAGATTT---AGA  1044

seq1  AGAAAAAATTGATTAATCTTTTACCTTTAAAGTACAAAGAAAATAATGGC  1099
      ||||||   ||||||   |||||||||| |||  ||||||||   |||||
seq2  AGAAAA---TGATTATCTTTTTACCTTT-AAGATCAAAGAAA--CATGGC  1088

seq1  ATC-CTAT  1106
      ||| ||||
seq2  ATCTCTAT  1096


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