BAC Information

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BAC

Clone NameB6Ng01-082E16
Chromosome3 (Build37)Y (Build37)
Map Location 93,476,061 - 93,476,979573,321 - 573,354
singlet/doubletsingletsinglet
Overlap geneTdpoz1
Upstream geneLce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2
Downstream geneLOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082E16.bB6Ng01-082E16.g
ACCDH896886DH896887
length1,207500
definitionDH896886|Mus musculus domesticus DNA, BAC clone: B6Ng01-082E16, 5' end.DH896887|Mus musculus domesticus DNA, BAC clone: B6Ng01-082E16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(93,476,061 - 93,476,979)(573,321 - 573,354)
sequence
gaattcatttttaaaaacacaacattgatattgtgatgcagatttaaaga
cttgcaagttaacatcttctgcttccacacattgctcactagaactctcc
atccaaacaccagctaatgggtaaaagctccctctcccacactggtcagt
gtaaatatcacctggttccaagggagggatattgagctcacagccaccct
gtggtgtcctgtggatggagacagtcccagtctttatgattgtcctcctt
gctgactcctcattttagcacattttctcttgagtgacatttcctctttc
ctctgtgtcttttccttttcttaatactgagaaaccccaggcctgtataa
accattatttacctctctgctcactcaggtactggcctgatctcagaccc
caattgactacttgaggtcttggtgatctgtccctcctgttgttttagtt
aacttatcctcaggatgctgccactctcacccagaaaggatatgcctttg
cagccactcccaggatccttactgagatgcctcccactctttaaggcttc
cgaattcacaggctacatttggccccaatatccactaagcaatgactcta
cattgctgtttaaggacacttaaatatattttacaagtctctcaccagcc
atccagaaaaatggaaaggtttctctgcagggtcccctccctccacctcc
atctctcgccactttattctttgctctccctcctgcatacaggcacagtg
aaagactgcctgggttggggtatgataaccactgagaagaaacagtgttc
ccccttgattctgacattgcctctgtggctgcctctagcctcctctctct
actttcccccttgcatgcttgctctctgccctacccaaaaccatggggcc
caaacatgcttgctagagttgcagcagacagagcacagctgcagccctgc
ctcttactccctgccctcccaagtgcttgctccctttaccttgcagcact
tgtaccctgctcacaccagtttgagttctgcctatgcttctgtgctcctg
ggctacccaccaccactacctctcactctgattacttccattctgttctg
catcagctctaaccaggtgtaacagtgatcttgctccatgtgttagatca
acccactggtctgctccagtaaccgagctgactatgagaagaggaacctt
tgtccaa
gaattctttgtttagctctgtacttccccctctttttaaaaatagggttc
tttagtttttgtggagtccgatttcttgagatatatatatatacatatat
tggatattagctccctattggatttaggattggtaaggatctttcctcaa
tcttttggtggccttttgtcttattgacagtgtcttttgcctttcagaag
ctttgcagttttatgagttcccatttgtcaattcttgctcttgagcacaa
atcattgctgttctgttcaggaatcttttccctgtgctcctatgttcaag
gctcttccccagtttctcctctataagtttcagtacctcttgttttatgt
ggagtcctttgatctacataaaaatcctttgacttgagtttgtacaagga
gacaagaatggatcaattcaaagtggatgctcgaagtcagctattggatg
gaacacaaggcccccaatggaggagctagagaaagtacccaaggagctga

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_93476061_93476979
seq2: B6Ng01-082E16.b_349_1252

seq1  TGTGTCTTTTCCTTTTCTTAATACTGAGAAACCCCAGGCCTGTATAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTTTTCCTTTTCTTAATACTGAGAAACCCCAGGCCTGTATAAACC  50

seq1  ATTATTTACCTCTCTGCTCACTCAGGTACTGGCCTGATCTCAGACCCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTACCTCTCTGCTCACTCAGGTACTGGCCTGATCTCAGACCCCAA  100

seq1  TTGACTACTTGAGGTCTTGGTGATCTGTCCCTCCTGTTGTTTTAGTTAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTACTTGAGGTCTTGGTGATCTGTCCCTCCTGTTGTTTTAGTTAAC  150

seq1  TTATCCTCAGGATGCTGCCACTCTCACCCAGAAAGGATATGCCTTTGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCTCAGGATGCTGCCACTCTCACCCAGAAAGGATATGCCTTTGCAG  200

seq1  CCACTCCCAGGATCCTTACTGAGATGCCTCCCACTCTTTAAGGCTTCCGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCCCAGGATCCTTACTGAGATGCCTCCCACTCTTTAAGGCTTCCGA  250

seq1  ATTCACAGGCTACATTTGGCCCCAATATCCACTAAGCAATGACTCTACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACAGGCTACATTTGGCCCCAATATCCACTAAGCAATGACTCTACAT  300

seq1  TGCTGTTTAAGGACACTTAAATATATTTTACAAGTCTCTCACCAGCCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTTAAGGACACTTAAATATATTTTACAAGTCTCTCACCAGCCATC  350

seq1  CAGAAAAATGGAAAGGTTTCTCTGCAGGGTCCCCTCCCTCCACCTCCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAATGGAAAGGTTTCTCTGCAGGGTCCCCTCCCTCCACCTCCATC  400

seq1  TCTCGCCACTTTATTCTTTGCTCTCCCTCCTGCATACAGGCACAGTGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGCCACTTTATTCTTTGCTCTCCCTCCTGCATACAGGCACAGTGAAA  450

seq1  GACTGCCTGGGTTGGGGTATGATAACCACTGAGAAGAAACAGTGTTCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCCTGGGTTGGGGTATGATAACCACTGAGAAGAAACAGTGTTCCCC  500

seq1  CTTGATTCTGACATTGCCTCTGTGGCTGCCTCTAGCCTCCTCTCTCTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTCTGACATTGCCTCTGTGGCTGCCTCTAGCCTCCTCTCTCTACT  550

seq1  TTCCCCCTTGCATGCTTGCTCTCTGCCCTACCCAAAACCATGGGGCCCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCCTTGCATGCTTGCTCTCTGCCCTACCCAAAACCATGGGGCCCAA  600

seq1  ACATGCTTGCTAGAGTTGCAGGCAGACAGAGCACAGCTGCAGGCCCTGCC  650
      |||||||||||||||||||| |||||||||||||||||||| ||||||||
seq2  ACATGCTTGCTAGAGTTGCA-GCAGACAGAGCACAGCTGCA-GCCCTGCC  648

seq1  TCTTACTCCCTGCCCCTCCCAAGGTGCTTGCTCCCTTTTACCTTGCAGCA  700
      |||||||||||| ||||||||| |||||||||||| ||||||||||||||
seq2  TCTTACTCCCTG-CCCTCCCAA-GTGCTTGCTCCC-TTTACCTTGCAGCA  695

seq1  CTTGTACCCTGCTCACACCAGTTTGAGTTCTGCCTATGCTTCTGTGCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTACCCTGCTCACACCAGTTTGAGTTCTGCCTATGCTTCTGTGCTCC  745

seq1  TGGGGCCTACCCACCACCACTA-CTCTCAACTCTGATTACTTTCCATTCT  799
      ||||  |||||||||||||||| ||||| ||||||||||| |||||||||
seq2  TGGG--CTACCCACCACCACTACCTCTC-ACTCTGATTAC-TTCCATTCT  791

seq1  GTTCTGCATCAGCTCTAAACCAGGTGTAACAGGTGATC-TGCTCCATGTG  848
      |||||||||||||||| |||||||||||||| |||||| |||||||||||
seq2  GTTCTGCATCAGCTCT-AACCAGGTGTAACA-GTGATCTTGCTCCATGTG  839

seq1  -TAGATCAGACCCACTGGTCTGGCTACAGTAACAGAAGCTGACTATGGAG  897
       ||||||| |||||||||||| ||| ||||||| | |||||||||| |||
seq2  TTAGATCA-ACCCACTGGTCT-GCTCCAGTAACCG-AGCTGACTAT-GAG  885

seq1  AAAGCAGTGACCTTTTGTCCAA  919
      ||   || || | |||||||||
seq2  AA--GAG-GAACCTTTGTCCAA  904

seq1: chrY_573321_573354
seq2: B6Ng01-082E16.g_538_571

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAA  34
      |||||||||||||||||||||||||||||||| |
seq2  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTGA  34