BAC Information

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BAC

Clone NameB6Ng01-082E20
Chromosome3 (Build37)17 (Build37)
Map Location 41,058,975 - 41,059,73740,237,202 - 40,238,265
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082E20.bB6Ng01-082E20.g
ACCDH896894DH896895
length8841,062
definitionDH896894|Mus musculus domesticus DNA, BAC clone: B6Ng01-082E20, 5' end.DH896895|Mus musculus domesticus DNA, BAC clone: B6Ng01-082E20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,058,975 - 41,059,737)(40,237,202 - 40,238,265)
sequence
gaattctttgtttagctctgagcaccattttaaatggggttatttgattt
tctggagtccaccttcttgagttctttatatatattggatattagtcccc
tatctgatttagaataggtaaagatcctttcccaatctgttggtggcatt
tttgtcttattgatagtgtcttttgccttacagaagctttgcaattatat
gaggtcccatttgttgattctcgatcttacagcacaagccattgctgttc
ttttcaggaatttttccccagagcccatatcttcgaggcttttccctaat
ttctcctctataagtttcagtgtctctggttttatgaaaagttccttaat
ccacttagatttgaccttagtacaaggagataggaatggatcaatttgca
ttcttctacatgataaccaccagttgtgccagcaccatttgttgaaaatg
ctgtctttttttccactggaaggttttagctcccttgtcaaagatcaagt
gaccataggtgtgtgggttcatttctgagtgttcaattctattccattgg
tctacttctctgtcgctataccagtaccatacagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggtttttt
tttatccttgagaacagtttttgctattctaggttttttgttattccaga
tgaatttgcagatttccctttctaattcgttgaagaattgagttgtaatt
ttgatggggattgcattaaatctgttgattgattttggcaagatagtcat
ttttactatattgatactgccaatccatgagcataggagacctttccatc
ttctgagatctttaatttcattattcagagactt
gaattctagaataatggaaactcataggaatctagtggctcccacccttc
cacccaccccaccccaccccccaccccccaaaaacaaaacaaaactccta
gcaatggcagacatgaagcctgaacatggcacttcctataaccagaaagg
agccttcttaactgatcaaaaagtcttcattcagcaactaatttaaatgt
atggacagacccacaaccaaccattaaacggggcttagaaattctgcagg
aaaaaaaaaagaaattcttcagaaaagggggagcaagaaattgaaagagt
cagagaggtctaggacacaagagtagaactgagaaccatgaactaaatgg
acctaggccctcagcactaatgtaagagttatgatgctggaagtatgtgt
aggactcctaaagtgggagcaagggctgtttctgattatattgcctgact
ttgaatcccttaccctaactgggatttcttctgtaccgtcaactgaagaa
aatatacctagtcttattgcaagataatgttggtgagttgtatgatattc
atgggaggactcctacttatgaggagaaaaggaggagtgacaaaatgagc
agtaggtgaggggagaatgaagcactgggaagagagaagtagggggcatt
gcagtaaggatgtaaagtaaaaaaaaaaaaaatacatggaataattaaaa
acattgttataatgtaaacaatatgtttcagtggttatgtcatgttgcat
actcacatattcattagaactcataggggactaaactgacacgtagtatg
caggggtcttacatatgccaattacatacatgttatggcttttctgcttg
gtgttcatgtggaacttctaggagtgttatcagaggctgaatctgctatc
tacctctggggctgtaaccatgttatgtggtgttttgtctagcatggtag
aggtaaatacaaacatagtcttacttcacgtgatatacatttagttgata
ctatctagagcaggtttttctaaaccaaaaagtgggagtagatgggaagg
gataatcaagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41058975_41059737
seq2: B6Ng01-082E20.b_50_815 (reverse)

seq1  AATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATTTGAAAG  50
      ||||||||||||||||||||| |||||||||||||||||||||| |||||
seq2  AATGCAATCCCCATCAAAATTACAACTCAATTCTTCAACGAATTAGAAAG  50

seq1  AGCAATCTGCAAATTCATCTGGAATAACAAAAAACCTAGGATAGCAAAAA  100
       | |||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GGAAATCTGCAAATTCATCTGGAATAACAAAAAACCTAGAATAGCAAAAA  100

seq1  CTCTTCTCAAGGAT--AACAGAACCTCTGGTGGAATCACCATGCCTGACC  148
      || |||||||||||  || | |||||||||||||||||||||||||||||
seq2  CTGTTCTCAAGGATAAAAAAAAACCTCTGGTGGAATCACCATGCCTGACC  150

seq1  TAAAGCTTTACTACAGAGCAATTGTGATAAAAACTGCATGGTACTGGTAT  198
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TAAAGCTTTACTACAGAGCAATTGTGATAAAAACTGTATGGTACTGGTAT  200

seq1  AGTGACAGACAAGCAGACCAATGGAATAGAATTGAAGACTCAGAAACGAA  248
      || |||||| ||| |||||||||||||||||||||| ||||||||| |||
seq2  AGCGACAGAGAAGTAGACCAATGGAATAGAATTGAACACTCAGAAATGAA  250

seq1  TCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCC  298
       |||||||||||||||||||||||||| |||||||||||||||||| |||
seq2  CCCACACACCTATGGTCACTTGATCTTTGACAAGGGAGCTAAAACCTTCC  300

seq1  AGTGG-AAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTT  347
      ||||| ||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGTGGAAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTG  350

seq1  GTTATCATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACTA  397
      |||||||||||||||||||| |||||||||| ||||||||||||||||||
seq2  GTTATCATGTAGAAGAATGCAAATTGATCCATTCCTATCTCCTTGTACTA  400

seq1  AGGTCAAATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACACTG  447
      ||||||||||||||||||| |||||||    |||||||||||||||||||
seq2  AGGTCAAATCTAAGTGGATTAAGGAACTTTTCATAAAACCAGAGACACTG  450

seq1  AAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGG  497
      |||||||||||||||||| | ||||||||||| |||||||||| | | ||
seq2  AAACTTATAGAGGAGAAATTAGGGAAAAGCCTCGAAGATATGGGCTCTGG  500

seq1  GGAAAAATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAA  547
      ||||||||||||| | |||||||||||||||||||||||||||| |||||
seq2  GGAAAAATTCCTGAAAAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAA  550

seq1  TAGACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGAC  597
      |  ||||||||||||||||  || ||||||||||||| ||||||||||||
seq2  TCAACAAATGGGACCTCATATAATTGCAAAGCTTCTGTAAGGCAAAAGAC  600

seq1  ACCGTCAATAAGACAAAAA-GGCACCAACAGATTGGGAAAGGATCTTTAC  646
      ||  ||||||||||||||| | ||||||||||||||||||||||||||||
seq2  ACTATCAATAAGACAAAAATGCCACCAACAGATTGGGAAAGGATCTTTAC  650

seq1  CTATCCTAAATCAGATAGGGGACTAATATCCAATATATATCAAGAACTCA  696
      |||| ||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTATTCTAAATCAGATAGGGGACTAATATCCAATATATATAAAGAACTCA  700

seq1  AGAAGGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCA  746
      |||||||||| ||||||||||||||||||||||||  ||||||| |||||
seq2  AGAAGGTGGACTCCAGAAAATCAAATAACCCCATT-TAAAATGGTGCTCA  749

seq1  GAGCTAAACAAAGAATT  763
      |||||||||||||||||
seq2  GAGCTAAACAAAGAATT  766

seq1: chr17_40237202_40238265
seq2: B6Ng01-082E20.g_68_1129

seq1  GAATTCTAGAATAATGGAAACTCATA-GAATCTAGTGGCTCCCACCCTTC  49
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GAATTCTAGAATAATGGAAACTCATAGGAATCTAGTGGCTCCCACCCTTC  50

seq1  CACCCACCCCACCCCACCCCCCACCCCCCAAAAACAAAACAAAACTCCTA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACCCCACCCCACCCCCCACCCCCCAAAAACAAAACAAAACTCCTA  100

seq1  GCAATGGCAGACATGAAGCCTGAACATGGCACTTCCTATAACCAGAAAGG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGGCAGACATGAAGCCTGAACATGGCACTTCCTATAACCAGAAAGG  150

seq1  AGCCTTCTTAACTGATCAAAAAGTCTTCATTCAGCAACTAATTTAAATGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCTTAACTGATCAAAAAGTCTTCATTCAGCAACTAATTTAAATGT  200

seq1  ATGGACAGACCCACAACCAACCATTAAACGGGGCTTAGAAATTCTGCAGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACAGACCCACAACCAACCATTAAACGGGGCTTAGAAATTCTGCAGG  250

seq1  AAAAAAAAAAGAAATTCTTCAGAAAAGGGGGAGCAAGAAATTGAAAGAGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAGAAATTCTTCAGAAAAGGGGGAGCAAGAAATTGAAAGAGT  300

seq1  CAGAGAGGTCTAGGACACAAGAGTAGAACTGAGAACCATGAACTAAATGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGGTCTAGGACACAAGAGTAGAACTGAGAACCATGAACTAAATGG  350

seq1  ACCTAGGCCCTCAGCACTAATGTAAGAGTTATGATGCTGGAAGTATGTGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGGCCCTCAGCACTAATGTAAGAGTTATGATGCTGGAAGTATGTGT  400

seq1  AGGACTCCTAAAGTGGGAGCAAGGGCTGTTTCTGATTATATTGCCTGACT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTCCTAAAGTGGGAGCAAGGGCTGTTTCTGATTATATTGCCTGACT  450

seq1  TTGAATCCCTTACCCTAACTGGGATTTCTTCTGTACCGTCAACTGAAGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATCCCTTACCCTAACTGGGATTTCTTCTGTACCGTCAACTGAAGAA  500

seq1  AATATACCTAGTCTTATTGCAAGATAATGTTGGTGAGTTGTATGATATTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATACCTAGTCTTATTGCAAGATAATGTTGGTGAGTTGTATGATATTC  550

seq1  ATGGGAGGACTCCTACTTATGAGGAGAAAAGGAGGAGTGACAAAATGAGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAGGACTCCTACTTATGAGGAGAAAAGGAGGAGTGACAAAATGAGC  600

seq1  AGTAGGTGAGGGGAGAATGAAGCACTGGGAAGAGAGAAGTAGGGGGCATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGTGAGGGGAGAATGAAGCACTGGGAAGAGAGAAGTAGGGGGCATT  650

seq1  GCAGTAAGGATGTAAAGT-AAAAAAAAAAAAATACATGGAATAATTAAAA  698
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GCAGTAAGGATGTAAAGTAAAAAAAAAAAAAATACATGGAATAATTAAAA  700

seq1  ACATTGTTATAATGTAAACAATATGTTTCAGTGGTTATGTCATGTTGCAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTTATAATGTAAACAATATGTTTCAGTGGTTATGTCATGTTGCAT  750

seq1  ACTCACATATTCATTAGAACTCATA-GGGACTAAACTGACACGTAGTATG  797
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ACTCACATATTCATTAGAACTCATAGGGGACTAAACTGACACGTAGTATG  800

seq1  CAGGGGTCTTACATATGCCAATTACATACATGTTATGGCTTTTCTGCTTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGTCTTACATATGCCAATTACATACATGTTATGGCTTTTCTGCTTG  850

seq1  GTGTTCATGTGGAACTTCTAGGAGTGTTATCAGAGGCTGAATCTGCTATC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCATGTGGAACTTCTAGGAGTGTTATCAGAGGCTGAATCTGCTATC  900

seq1  TACCTCTGGGGCTGTAACCATGTTATGTGTTGTTTTGTCTAGCATTGGTA  947
      ||||||||||||||||||||||||||||| |||||||||||||| |||||
seq2  TACCTCTGGGGCTGTAACCATGTTATGTGGTGTTTTGTCTAGCA-TGGTA  949

seq1  GAAGGGAAATTACATACATAGTCATACTTCACGTTGATATACCATTTAGT  997
      ||  || || |||| |||||||| ||||||||| ||||||| ||||||||
seq2  GA--GGTAAATACAAACATAGTCTTACTTCACG-TGATATA-CATTTAGT  995

seq1  TGATACTAATCTAGAGCAGGTTTTTCTAAACCAAAAAAGTGGAGTAGATG  1047
      ||||||| |||||||||||||||||||||||||||||   ||||||||||
seq2  TGATACT-ATCTAGAGCAGGTTTTTCTAAACCAAAAAGTGGGAGTAGATG  1044

seq1  GGAA-GGATAATCAAGGT  1064
      |||| ||||||||||| |
seq2  GGAAGGGATAATCAAGTT  1062