BAC Information

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BAC

Clone NameB6Ng01-082F10
Chromosome3 (Build37)
Map Location 106,519,207 - 106,520,256
singlet/doubletsinglet
Overlap gene4933421E11Rik
Upstream gene6530418L21Rik, Rap1a, EG433637, Adora3, I830077J02Rik, Atp5f1, Wdr77, Ovgp1, 1700027A23Rik, LOC100043591, Bclp2, LOC100043594, LOC670819, LOC100043129, Chia, Chi3l3, Chi3l4, EG624696, BC051070, 2010016I18Rik, Dennd2d, Cept1, Tmem77, LOC100043608
Downstream geneCd53, Olfr266, Kcna3, AI504432, Kcna2, Kcna10, Gm131, A630076J17Rik, Prok1, Hbxip, Slc16a4, Rbm15, LOC383901, Kcnc4, Slc6a17, Ubl4b, Alx3, 6330569M22Rik, Ahcyl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082F10.bB6Ng01-082F10.g
ACCDH896920DH896921
length9681,064
definitionDH896920|Mus musculus domesticus DNA, BAC clone: B6Ng01-082F10, 5' end.DH896921|Mus musculus domesticus DNA, BAC clone: B6Ng01-082F10, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgacggtgtcttttgccttgcagaaacgttggagtttca
ttaggtcccatttgtcaattctcgatcttacagtacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcaaatttctcctttctaatttgttgaagaattgagttggaattt
tgatggggattgcattgaatctgtagattgcttttggcaagatagccatt
tttacaatgttgatcctgccaatccatgagcatgcttcagtccttcttag
aaggggaaacaaaataaccacaggaggagaacacagagacaaagtttgga
gcaaagattgaaggaaaggctgtccagagactgctcaacctggtggattc
atcccgtatacatccacc
gaattctcttatcttcatgagataggattttagttcagtatcctggtttt
caggtgtgttggtgtatccagagcttgctgaggtgggagaactgagttct
gatcgtgccagaatatattggcttctcttgtttatggtcctgtgcttgcc
tcttcccatctggttatctctgctaactggcctgcgtgactctgtctgaa
gcctgcctctggtgtacttaaattactgcaggtatccttggaggctttca
gactctgggatcttaagaggcacagactcactgatgatcttgcaggtgga
aggcactggcagagtttgtgcaggggtgcagatggggtggagataagtcc
tgagtatgctaggctcctcagggttgccatcttctgtggttatttggggg
agccccttactgtggccctggctttatcatatctcttgggggacctggag
acttgtggggtctgcagaggagcgtagatgctggtgatctgcccaggcag
aaggctcaggcctgaaagtatgtatcttttttgaacagttgtccttgatc
gatagatctggatctatttgcatttcttctacatggagactaaatgaaaa
tgaaaacacaacatacacaggcctatgggacacaatgaaggtggttctaa
aagcacaaatgcatcccataaaacaaaacaaaactctggagagatctcta
ataaataaattaaaatcacacctgaaagtgctagaacaagaacaaaaaca
aaacaaatccccacaaatccaaactaacaaaaagaggaagaaaggaagaa
aaaattacatccaaagggatagctagcaagaaataatcaaattgtgtggg
aaatcagtaaactatgcacacacaaacaaacaaaactacatagaaatcat
ttgcataaaacatggatatttttgacaaatcaatgagattgataaacttt
tagccaaattaactggaaagacacagaaagaagtccaaatatagaatggg
gacaaactgggtgacatcatcaacgaacacaagaaatctacagaatcata
gaaacatctaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_106519207_106520256
seq2: B6Ng01-082F10.g_70_1112

seq1  GAATTCTCTTATCTTCATGAGATAGGATTTTAGTTCAGTATCCTGGTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTATCTTCATGAGATAGGATTTTAGTTCAGTATCCTGGTTTT  50

seq1  CAGGTGTGTTGGTGTATCCAGAGCTTGCTGAGGTGGGAGAACTGAGTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGTGTTGGTGTATCCAGAGCTTGCTGAGGTGGGAGAACTGAGTTCT  100

seq1  GATCGTGCCAGAATATATTGGCTTCTCTTGTTTATGGTCCTGTGCTTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCGTGCCAGAATATATTGGCTTCTCTTGTTTATGGTCCTGTGCTTGCC  150

seq1  TCTTCCCATCTGGTTATCTCTGCTAACTGGCCTGCGTGACTCTGTCTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCATCTGGTTATCTCTGCTAACTGGCCTGCGTGACTCTGTCTGAA  200

seq1  GCCTGCCTCTGGTGTACTTAAATTACTGCAGGTATCCTTGGAGGCTTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCTCTGGTGTACTTAAATTACTGCAGGTATCCTTGGAGGCTTTCA  250

seq1  GACTCTGGGATCTTAAGAGGCACAGACTCACTGATGATCTTGCAGGTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGGGATCTTAAGAGGCACAGACTCACTGATGATCTTGCAGGTGGA  300

seq1  AGGCACTGGCAGAGTTTGTGCAGGGGTGCAGATGGGGTGGAGATAAGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACTGGCAGAGTTTGTGCAGGGGTGCAGATGGGGTGGAGATAAGTCC  350

seq1  TGAGTATGCTAGGCTCCTCAGGGTTGCCATCTTCTGTGGTTATTTGGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTATGCTAGGCTCCTCAGGGTTGCCATCTTCTGTGGTTATTTGGGGG  400

seq1  AGCCCCTTACTGTGGCCCTGGCTTTATCATATCTCTTGGGGGACCTGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCTTACTGTGGCCCTGGCTTTATCATATCTCTTGGGGGACCTGGAG  450

seq1  ACTTGTGGGGTCTGCAGAGGAGCGTAGATGCTGGTGATCTGCCCAGGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTGGGGTCTGCAGAGGAGCGTAGATGCTGGTGATCTGCCCAGGCAG  500

seq1  AAGGCTCAGGCCTGAAAGTATGTATCTTTTTTGAACAGTTGTCCTTGATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTCAGGCCTGAAAGTATGTATCTTTTTTGAACAGTTGTCCTTGATC  550

seq1  GATAGATCTGGATCTATTTGCA-TTCTTCTACATGGAGACTAAATGAAAA  599
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GATAGATCTGGATCTATTTGCATTTCTTCTACATGGAGACTAAATGAAAA  600

seq1  TGAAAACACAACATACACAGGCCTATGGGACACAATGAAGGTGGTTCTAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACACAACATACACAGGCCTATGGGACACAATGAAGGTGGTTCTAA  650

seq1  AAGCACAAATGCAT-CCATAAAACAAAACAAAACTCTGGAGAGATCTCTA  698
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAGCACAAATGCATCCCATAAAACAAAACAAAACTCTGGAGAGATCTCTA  700

seq1  ATAAATAAATTAAAATCACACCTGAAAGTGCTAGAACAAGAACAAAAACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAATTAAAATCACACCTGAAAGTGCTAGAACAAGAACAAAAACA  750

seq1  AAACAAATCCCCACAAATCCAAACTAACAAAAAAGAGGAAGAAAGGAAGA  798
      |||||||||||||||||||||||||||| |||||||||||||||||||| 
seq2  AAACAAATCCCCACAAATCCAAACTAAC-AAAAAGAGGAAGAAAGGAAG-  798

seq1  AAAAAATTACATCCAAAAGGAATAGCTAGCAAGAAATAATCAAATTTGTG  848
      |||||||||||||| ||||| ||||||||||||||||||||||| |||||
seq2  AAAAAATTACATCC-AAAGGGATAGCTAGCAAGAAATAATCAAA-TTGTG  846

seq1  TTGGAAATCAGTAAACTAGGCACACACAAACAAACAAAACTACATAG-AA  897
      | |||||||||||||||| |||||||||||||||||||||||||||| ||
seq2  TGGGAAATCAGTAAACTATGCACACACAAACAAACAAAACTACATAGAAA  896

seq1  TCAATTGCATAAAACATGGATATTTTTGACAAAAATCAATGAGATTGATA  947
      ||| ||||||||||||||||||||||||||  ||||||||||||||||||
seq2  TCATTTGCATAAAACATGGATATTTTTGAC--AAATCAATGAGATTGATA  944

seq1  AACTTTTAGCCAAATTAACT-GAAAGACACAGAAAGAAGATCCAAATTAA  996
      |||||||||||||||||||| |||||||||||||||||| |||||||  |
seq2  AACTTTTAGCCAAATTAACTGGAAAGACACAGAAAGAAG-TCCAAAT--A  991

seq1  TAGAAATGGGGACAAACTGGGTGACATCA-CAACAGACAACAAGAAAATC  1045
      ||| ||||||||||||||||||||||||| |||| ||  ||||| |||||
seq2  TAG-AATGGGGACAAACTGGGTGACATCATCAAC-GAACACAAG-AAATC  1038

seq1  TACAG  1050
      |||||
seq2  TACAG  1043