BAC Information

Click to search

BAC

Clone NameB6Ng01-082H18
Chromosome3 (Build37)
Map Location 37,552,483 - 37,553,660
singlet/doubletsinglet
Overlap genenone
Upstream geneTrpc3, 4932438A13Rik, Tenr, LOC652987, Il2, Il21, Cetn4, Bbs12, LOC100041328, Fgf2, LOC100040649, Nudt6, Spata5, LOC665778, Spry1
Downstream geneEG381438, LOC100038875, LOC100041338, EG626367, 4930556A17Rik, LOC665811, EG665821, LOC100041366, LOC100040785, LOC665838, Ankrd50, LOC100041378, LOC665855, LOC100040824
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082H18.bB6Ng01-082H18.g
ACCDH897024DH897025
length6411,170
definitionDH897024|Mus musculus domesticus DNA, BAC clone: B6Ng01-082H18, 5' end.DH897025|Mus musculus domesticus DNA, BAC clone: B6Ng01-082H18, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgtaggaattagtgtgatctcatgctaggagaaggcaacttcat
tcagggcactgagttctaacttaagacttaagtcaagtgaccggggggct
ggctccatgggcatttgctatgtgggtgtgagaatctgaattcctgtgcc
cagcatccacatgaaagccagaatgaacattacatgtctgtaaccctggg
actggagggcagagacagggagcccaggagctcagtggacagctagttta
gcagaaatagcaggctccagagtcagggagaaacactgcctcaaaacata
cagtagagaagtaattaaggaagacacctcaatgtcaacttctggcctcc
acaagtatgtgtatgcatgtgtgcacatatgttactttcaaacacataca
cacacacacacacacacacacacacacatactactactactactactact
actactactactactactactactactactacaagactgacatgacagca
gcacttaggagataatgaaggatcagaaatttagggtcatcttcagctac
atatcaagtttgatgcttgagtccaggctgggttacatgaaatcccatct
caaaagaaaaagagggagggaggacgggagggagggaggga
gaattctctctacaaacgaaggcaaaataatttgggatttagaactggtc
actttttctttgatttgaaatgcttagaggtgccgtgccggagctgggat
gtctccaggttttatgaaggggtaaggcccacgtaggagttggaaagtcc
catttggaagatgatcattagcaagtgggctgatggatctccaagtgtga
gggtcagtactgtctccgatggcccagaccgtgggcagttccgttgtcca
cactgagtggaagcatgacctgcggtggctgtcatcatggggcagggagc
ctcttcaggggagctgtcctttgtgtggattgaaaaagaaggcaaatttt
ggaaagaagaaaaactggcagggctcaaaaaaaaaaagtctgttccaact
tgcctgtcttgaaaaaagaaaacccaacattcctttgagaagcagttttt
tcaaagtatttgccctggagccctccttcctactcaaccaagcttatctt
tcaaaacaaacatttactcctttctactactgagtgaggaagttcccctg
agctagtgccctacaaacagatcccagaggcaactgtcacccccacccct
ggggcaggacaaatgactaatgcaaccacaggcctggggagcccagccga
gattctgtgacaggctgctcagttcttaactgaggggaaaacacacgcag
gcaaccgtacttctgtgtgcaaattaaacctcgggtccctttcaccctgt
ggaaaatgtgtgccccgtggaaagagatgggtgacgcttggaacgcttgt
gtcatttctcctaagatgttccgggctcaaggcatggctacaagaaagac
aaacagccatatgaaacagtctttccagtgcaccataccaccagctgttt
tctctgcctcccgccctgcgctggctgctcggtcctgctcagtgttggtg
gctgggctcccaggctccgatgtctgctttctgttttctctccacttctc
tgctgccgcgcataaatctattggggggttttactctaaaccctattagc
aggcacacttaaattcagtctcggaggccaccttatgtcttctttatcgt
atggtctatagctaagtctgaacctcactctgattgctcctgaaaaacca
attctcataggagtccccag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_37552483_37553660
seq2: B6Ng01-082H18.g_69_1238

seq1  GAATTCTCTCTACAAACGAAGGCAAAATAATTTGGGATTTAGAACTGGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTACAAACGAAGGCAAAATAATTTGGGATTTAGAACTGGTC  50

seq1  ACTTTTTCTTTGATTTGAAATGCTTAGAGGTGCCGTGCCGGAGCTGGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTCTTTGATTTGAAATGCTTAGAGGTGCCGTGCCGGAGCTGGGAT  100

seq1  GTCTCCAGGTTTTATGAAGGGGTAAGGCCCACGTAGGAGTTGGAAAGTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCAGGTTTTATGAAGGGGTAAGGCCCACGTAGGAGTTGGAAAGTCC  150

seq1  CATTTGGAAGATGATCATTAGCAAGTGGGCTGATGGATCTCCAAGTGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGGAAGATGATCATTAGCAAGTGGGCTGATGGATCTCCAAGTGTGA  200

seq1  GGGTCAGTACTGTCTCCGATGGCCCAGACCGTGGGCAGTTCCGTTGTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAGTACTGTCTCCGATGGCCCAGACCGTGGGCAGTTCCGTTGTCCA  250

seq1  CACTGAGTGGAAGCATGACCTGCGGTGGCTGTCATCATGGGGCAGGGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGTGGAAGCATGACCTGCGGTGGCTGTCATCATGGGGCAGGGAGC  300

seq1  CTCTTCAGGGGAGCTGTCCTTTGTGTGGATTGAAAAAGAAGGCAAATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCAGGGGAGCTGTCCTTTGTGTGGATTGAAAAAGAAGGCAAATTTT  350

seq1  GGAAAGAAGAAAAACTGGCAGGGCTCAAAAAAAAAAAGTCTGTTCCAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAAGAAAAACTGGCAGGGCTCAAAAAAAAAAAGTCTGTTCCAACT  400

seq1  TGCCTGTCTTGAAAAAAGAAAACCCAACATTCCTTTGAGAAGCAGTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTCTTGAAAAAAGAAAACCCAACATTCCTTTGAGAAGCAGTTTTT  450

seq1  TCAAAGTATTTGCCCTGGAGCCCTCCTTCCTACTCAACCAAGCTTATCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTATTTGCCCTGGAGCCCTCCTTCCTACTCAACCAAGCTTATCTT  500

seq1  TCAAAACAAACATTTACTCCTTTCTACTACTGAGTGAGGAAGTTCCCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACAAACATTTACTCCTTTCTACTACTGAGTGAGGAAGTTCCCCTG  550

seq1  AGCTAGTGCCCTACAAACAGATCCCAGAGGCAACTGTCACCCCCACCCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGTGCCCTACAAACAGATCCCAGAGGCAACTGTCACCCCCACCCCT  600

seq1  GGGGCAGGACAAATGACTAATGCAACCACAGGCCTGGGGAGCCCAGCCGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAGGACAAATGACTAATGCAACCACAGGCCTGGGGAGCCCAGCCGA  650

seq1  GATTCTGTGACAGGCTGCTCAGTTCTTAACTGAGGGGAAAACACACGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTGTGACAGGCTGCTCAGTTCTTAACTGAGGGGAAAACACACGCAG  700

seq1  GCAACCGTACTTCTGTGTGCAAATTAAACCTCGGGTCCCTTTCACCCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCGTACTTCTGTGTGCAAATTAAACCTCGGGTCCCTTTCACCCTGT  750

seq1  GGAAAATGTGTGCCCCGTGGAAAGAGATGGGTGACGCTTGGAACGCTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATGTGTGCCCCGTGGAAAGAGATGGGTGACGCTTGGAACGCTTGT  800

seq1  GTCATTTCTCCTAAGATGTTCCGGGCTCAAGGCATGGCTACAAGAAAGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTCTCCTAAGATGTTCCGGGCTCAAGGCATGGCTACAAGAAAGAC  850

seq1  AAACAGCCATATGAAACAGTCTTTCCAGTGCACCATACCACCAGCTGTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCCATATGAAACAGTCTTTCCAGTGCACCATACCACCAGCTGTTT  900

seq1  TCTCTGCCTCCCGCCCTGCGCTGGCTGCTCGGTCCTGCTCAGTGTTGGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCCTCCCGCCCTGCGCTGGCTGCTCGGTCCTGCTCAGTGTTGGTG  950

seq1  GCTGGGCTCCCAGGCTCCGATGTCTGCTTTCTGTTTTCTCTTCCACTTCT  1000
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GCTGGGCTCCCAGGCTCCGATGTCTGCTTTCTGTTTTCTC-TCCACTTCT  999

seq1  CTGCCTGCCGCGCATAAATCTATTGGGGTGGTTTTACTCCTAAACCCTA-  1049
      ||| |||||||||||||||||||||||| ||||||||| |||||||||| 
seq2  CTG-CTGCCGCGCATAAATCTATTGGGG-GGTTTTACT-CTAAACCCTAT  1046

seq1  TAGCA-GCACACCTTTAAATTCAGGTCTCGGAGGCCACC-TATGTCTCTT  1097
      ||||| ||||||  ||||||||| ||||||||||||||| |||||||  |
seq2  TAGCAGGCACAC--TTAAATTCA-GTCTCGGAGGCCACCTTATGTCTTCT  1093

seq1  TAATCGTATTGGTCTATAGCTAAGTCTGAACCTCACTCTGATTGGCTCCT  1147
      | |||||| |||||||||||||||||||||||||||||||||| ||||||
seq2  TTATCGTA-TGGTCTATAGCTAAGTCTGAACCTCACTCTGATT-GCTCCT  1141

seq1  GAGAAACCAATTTCTCTCAGGAAGTCCCCAG  1178
      || ||||||| |||||  ||| |||||||||
seq2  GAAAAACCAA-TTCTCATAGG-AGTCCCCAG  1170