BAC Information

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BAC

Clone NameB6Ng01-082J11
Chromosome3 (Build37)5 (Build37)
Map Location 41,059,224 - 41,059,73786,722,112 - 86,723,111
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082J11.bB6Ng01-082J11.g
ACCDH897102DH897103
length946993
definitionDH897102|Mus musculus domesticus DNA, BAC clone: B6Ng01-082J11, 5' end.DH897103|Mus musculus domesticus DNA, BAC clone: B6Ng01-082J11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,224 - 41,059,737)(86,722,112 - 86,723,111)
sequence
gaattctttgtttagctctgagccccatttttaatggggttatttgattt
tctggagtccatcttcttgagttctttatatatattggatattagtcccc
tatctgatttaggataggtaaagatcctttgccaatctgttggtggcctt
tttgtcttattgatggcacttttgccttacagaagcttttcaattttatg
aggtcccatttatcgattctcgttcttacagcacaagccattgctgttct
attcaggaatttttcccctgtacccatatcttcgaggcttttccctactt
tctcctctataagtttcagtgtctctggttttatgtggagttccttgatc
cacttagatttgaccttagttcaaggagataggaatggatcaattctcat
tcttctacatgataaccgccagttgtgccagcaccatttgttgaaaatgc
tgtcttttttccaatggatggttttagcacccttgtcaaagatcaagtga
ccataggtgtgtgggttcatttctgggtcttcaattctattccattggtc
tacttgtctgtcactataccagtaacatgcagtttttatcacaattgctc
tgtagtacagctttaggtcaggcatggtgattccaccagaggttctttta
tccttgagaagagtttttgctatcttaagttttttgttattccagatgaa
tttgcagattgccatttctaattcattgaaaatttgagttggcattttga
tggggattgcattgaatctgtagatagcttttggcaagatagctatcttt
ataatattgatcctgccaatccatgagcatgggagatctttctgtcttct
gagatcttctttaatttctttcttcagagacttgaagtttcttatcatac
agatctttcaattccttagttagagtcatgccaaggtattttatat
gaattctttgtttagctctgagccccattttttaatgggattatttgatt
ttctggagtccagcttcttgagttatttatatatatattggatattagtc
ccctatttgatttaggataggtaaagatcctttcccaatctgttggtggc
ctttttgtcttattgacagtgtcttttgccttgccgaagctttgcaattt
tatgaggtcccatttgtcgattctcgattttgcagcacaagccattgctg
ttctattcaggaattttccccctgtacccatatctcaagggttttcctta
ctttctcctctatgtttcagtgtctctggttttatgtggaattccttaat
ctacttagatttgaccttagtacaaggagataggaatggatcaattcata
ttcttctacataataaccgccagttgtgccagcaccatttgttgaaaatg
ctgtcttttttccactggatggtttttgacaagggagcaaattttttttc
ttaatttttgaagcaattgtgaatagaacctttcctttgatgtctgtctt
gacatatccattgacacactgatttttatatgttgattatatatctttct
gctttacttgaactgtttaattaagtgtaagtgctttctgacacagtatt
ttaagtatagtgttatgcaattagtgttcttctcccttttctgtttgtat
ctcatttatttcttctgcttgtattgcctgtatttgtaggaagccacata
tgccattacaaggtggcgctggctactgctggccaccacacataagtttg
ggtaaacaaccaatgtgtacatatgcagtgaagtgtttcaccaagtcact
gcctgtcccgggcatgataatgaggctttgccaggtacttgagagagaat
aaccattagatgagaaactgcaattgagtatgatgatgaggctcatggag
gtactgaagaaataccaatcgatgaggacatgcaaatgaggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059224_41059737
seq2: B6Ng01-082J11.b_48_560 (reverse)

seq1  CCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCA  50
      |||||||||||||||||||||||||| |||||||| ||||||||||||||
seq2  CCACACACCTATGGTCACTTGATCTTTGACAAGGGTGCTAAAACCATCCA  50

seq1  GTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGT  100
       |||||||||||||||||||||||||||||||||||||||||||||  ||
seq2  TTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGCGGT  100

seq1  TATCATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACTAAG  150
      ||||||||||||||||| ||||||||||| ||||||||||||| ||||||
seq2  TATCATGTAGAAGAATGAGAATTGATCCATTCCTATCTCCTTGAACTAAG  150

seq1  GTCAAATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACACTGAA  200
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GTCAAATCTAAGTGGATCAAGGAACTCCACATAAAACCAGAGACACTGAA  200

seq1  ACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGG  250
      |||||||||||||||||| ||||||||||| ||||||||||  |||||||
seq2  ACTTATAGAGGAGAAAGTAGGGAAAAGCCTCGAAGATATGGGTACAGGGG  250

seq1  AAAAATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATA  300
      ||||||||||| |||||||||||||||||||||||||||||  |||||| 
seq2  AAAAATTCCTGAATAGAACAGCAATGGCTTGTGCTGTAAGAACGAGAATC  300

seq1  GACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACAC  350
      || |||||||||||||| ||| || |||||||||| ||||||||||   |
seq2  GATAAATGGGACCTCATAAAATTGAAAAGCTTCTGTAAGGCAAAAG-TGC  349

seq1  CGTCAATAAGACAAAAAGG-CACCAACAGATTGGGAAAGGATCTTTACCT  399
      | ||||||||||||||||| |||||||||||||| |||||||||||||||
seq2  CATCAATAAGACAAAAAGGCCACCAACAGATTGGCAAAGGATCTTTACCT  399

seq1  ATCCTAAATCAGATAGGGGACTAATATCCAATATATATCAAGAACTCAAG  449
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATCCTAAATCAGATAGGGGACTAATATCCAATATATATAAAGAACTCAAG  449

seq1  AAGGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGA  499
      ||| |||| |||||||||||||||||||||||| ||||||||||||||||
seq2  AAGATGGACTCCAGAAAATCAAATAACCCCATT-AAAAATGGGGCTCAGA  498

seq1  GCTAAACAAAGAATT  514
      |||||||||||||||
seq2  GCTAAACAAAGAATT  513

seq1: chr5_86722112_86723111
seq2: B6Ng01-082J11.g_69_1061

seq1  GAATTCTTTGTTTAGCTCTGAGCCCCATTTTTTAATGGGATTATTTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGAGCCCCATTTTTTAATGGGATTATTTGATT  50

seq1  TTCTGGAGTCCAGCTTCTTGAGTTATTTATATATATATTGGATATTAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAGTCCAGCTTCTTGAGTTATTTATATATATATTGGATATTAGTC  100

seq1  CCCTATTTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATTTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGC  150

seq1  CTTTTTGTCTTATTGACAGTGTCTTTTGCCTTGCCGAAGCTTTGCAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGTCTTATTGACAGTGTCTTTTGCCTTGCCGAAGCTTTGCAATTT  200

seq1  TATGAGGTCCCATTTGTCGATTCTCGATTTTGCAGCACAAGCCATTGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGGTCCCATTTGTCGATTCTCGATTTTGCAGCACAAGCCATTGCTG  250

seq1  TTCTATTCAGGAATTTTCCCCCTGTACCCATATCTCAAGGGTTTTCCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTCAGGAATTTTCCCCCTGTACCCATATCTCAAGGGTTTTCCTTA  300

seq1  CTTTCTCCTCTATGTTTCAGTGTCTCTGGTTTTATGTGGAATTCCTTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCCTCTATGTTTCAGTGTCTCTGGTTTTATGTGGAATTCCTTAAT  350

seq1  CTACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTCATA  400

seq1  TTCTTCTACATAATAACCGCCAGTTGTGCCAGCACCATTTGTTGAAAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTACATAATAACCGCCAGTTGTGCCAGCACCATTTGTTGAAAATG  450

seq1  CTGTCTTTTTTCCACTGGATGGTTTTTGACAAGGGAGCAAATTTTTTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTTTTTCCACTGGATGGTTTTTGACAAGGGAGCAAATTTTTTTTC  500

seq1  TTAATTTTTGAAGCAATTGTGAATAGAACCTTTCCTTTGATGTCTGTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTTGAAGCAATTGTGAATAGAACCTTTCCTTTGATGTCTGTCTT  550

seq1  GACATATCCATTGACACACTGATTTTTATATGTTGATTATATATCTTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATATCCATTGACACACTGATTTTTATATGTTGATTATATATCTTTCT  600

seq1  GCTTTACTTGAACTGTTTAATTAAGTGTAAGTGCTTTCTGACACAGTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTACTTGAACTGTTTAATTAAGTGTAAGTGCTTTCTGACACAGTATT  650

seq1  TTAAGTATAGTGTTATGCAATTAGTGTTCTTCTCCCTTTTCTGTTTGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTATAGTGTTATGCAATTAGTGTTCTTCTCCCTTTTCTGTTTGTAT  700

seq1  CTCATTTATTTCTTCTGCTTGTATTGCCTGTATTTGTAGGAAGCCACATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTATTTCTTCTGCTTGTATTGCCTGTATTTGTAGGAAGCCACATA  750

seq1  TGCCATTACAAGGTGGCGCTGGCTACTGCTGGCCACCACACATAAGTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTACAAGGTGGCGCTGGCTACTGCTGGCCACCACACATAAGTTTG  800

seq1  GGTAAACAACCAATGTGTACATATGCAGTGAAGTGTTTCACCAAGTCACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAACAACCAATGTGTACATATGCAGTGAAGTGTTTCACCAAGTCACT  850

seq1  GCCTGTCCCGGGCATGATAATGAGGCTTTGCAAGGTAC-TGAGAGAGAAT  899
      ||||||||||||||||||||||||||||||| |||||| |||||||||||
seq2  GCCTGTCCCGGGCATGATAATGAGGCTTTGCCAGGTACTTGAGAGAGAAT  900

seq1  AACCAATCAGATGAGAGACATGCAAATGAGGTATGATGATGAGGCTCAGT  949
      |||| || |||||||| || ||||| ||| ||||||||||||||||||  
seq2  AACC-ATTAGATGAGAAAC-TGCAATTGA-GTATGATGATGAGGCTCATG  947

seq1  GAGGTACTGAGAGAGAATAACCAATCAGATGAGGAACATGCAAATGAGGT  999
      ||||||||||   ||||  ||||||| ||||||| |||||||||||||||
seq2  GAGGTACTGA---AGAAATACCAATC-GATGAGG-ACATGCAAATGAGGT  992

seq1  A  1000
      |
seq2  A  993