BAC Information

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BAC

Clone NameB6Ng01-082M20
Chromosome3 (Build37)
Map Location 80,581,667 - 80,582,800
singlet/doubletsinglet
Overlap geneGria2
Upstream geneTmem144, 1110032E23Rik, EG626797
Downstream geneGlrb, EG626841, Pdgfc, LOC229443
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082M20.bB6Ng01-082M20.g
ACCDH897252DH897253
length1,2411,107
definitionDH897252|Mus musculus domesticus DNA, BAC clone: B6Ng01-082M20, 5' end.DH897253|Mus musculus domesticus DNA, BAC clone: B6Ng01-082M20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccttcattagggtgcgaaccaggtcatcaggctcctccctcagga
cctaattcctattcattatgctttctcctaagaccttctcatttcaaatt
aaatagagtttcaatataggtggttttgagaacataaacattctaaacag
cagagatatgcttctttatgagataaaattggcttggtaagtatcataga
agtcttaaaaagaacatataaaagataacattttcctttattttttccca
cagtaaacatcctaagagctaatgttgtgttttaaaagacactgagtatt
acattttatctaaatattttattctgcctcatttttcctgattgaactag
ttacattcatgtagtgaccaaatgtgtatcaggtagacacttgagggggg
aagggcttactttggcttacagtttcaggttccatcatagcagggaaggc
atctggacatgcagagtttgggctaaaatacattcttttgatataattta
tattggggttatggtctactgaatatcagcatgtagaaaaaatgcaagta
gatccatatttatcaccctgcacaaaactcaagtcccagtggatcaaaga
ttttgacacaaagcagatacactaaaattgatagaaaagaaagtgaagaa
tagtctcgaggcattggcacaggaaacaactatatgaacagaacaccaat
catacaggcactaatatcaacattatccaataggacctcatggaactgaa
aagcttctgtaaggcaaaggacatcatcaaaaggacaaaacagcagtctt
gagaatgggataagatttttttttttttaccagttccacatctggcagag
aattgatatccaaaatatataaagaactcaggaaactagacaataacaaa
ccaaataattcaattaaaacaggtatagatctatacagagattctcaaca
gaggaatctcaaatgggcagatcattacagaaatgttcacatctttagca
tcagggaaatacaaatcaaactactctgaaactcattgtatactgtgaaa
tgctaaaatcaaaacacaaggtgaactcatttgggagactatggagcaag
gggaaccccttcatgcctatccaggatcaacctggtacaaatcctgaata
cgatagatgacttggcgaattgagatgctactggatacttcgaatcttag
aatgtccaaagatttcacgcatacgcaaatatgtttcgaca
gaattctggtttagaaaaaaaaaaaaacaggagccatcttttgatgcttc
ataggttttgagccgcaatgacagaatagcttccatcgttttcctcactg
acattcctaaagtctcttattgtttctcaggagaacgcagacaggtggag
agggtactggagatcctcaggtctcagaaatgactggtttataaggaaag
agggagttacatcagagtcacaaattccaatgggactaaattttagtatt
ttatttctatctaaattatgattggacccatataagtagtttgaagtgtc
tgtgttctttgaatttcagtgggacaattcaacgtaaagtttcacaagtt
aacaatgttaatgtaatctggtaaatataagtttagagtctaatttccta
tagggctaaaacacattccttccaaagaagaaagaaggggaacaaggaga
gaagttaaaaatgaaggcagcgggctggtgagatggctcagtgggtaaga
gcacccgactgctcttccgaaggtccagagttcaaatcctagcaaccaca
tggtggctcacaaccatccataacgagatctgactccctcttttggagtg
tctgaagacagctacaatgtacttacatataataaatcaataaaatctta
aaaagaaaaaaaatgaaggcggcaggagtctcccacagctgccttactga
taaaagctgctcacaagtcttcaaaagatacttttatcaaacaaagccaa
tgcacatattactcatacgtatgcatatactacatacaaataatttgatt
taaaaatatataacatgttatatataatgcatgataaaatactttagtgt
atataagaatacataaattttcatgacgacatagaaatatactgaagtta
tgtcatttatttaactgacccatgattgctgattaaattgctcgtgattt
taatgttgaaataaatgagcatcttcactatgtcatgctatgcgtgtgac
tatctgagattatacagtgtcacatctcagtgactatgcaatttggcagt
taaagtcattcagctagcatgcagggacactgatcttccaacgatgtttc
tagcaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_80581667_80582800
seq2: B6Ng01-082M20.g_70_1176

seq1  GAATTCTGGTTTAGAAAAAAAAAAAAACAGGAGCCATCTTTTGATGCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGTTTAGAAAAAAAAAAAAACAGGAGCCATCTTTTGATGCTTC  50

seq1  ATAGGTTTTGAGCCGCAATGACAGAATAGCTTCCATCGTTTTCCTCACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTTTTGAGCCGCAATGACAGAATAGCTTCCATCGTTTTCCTCACTG  100

seq1  ACATTCCTAAAGTCTCTTATTGTTTCTCAGGAGAACGCAGACAGGTGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCCTAAAGTCTCTTATTGTTTCTCAGGAGAACGCAGACAGGTGGAG  150

seq1  AGGGTACTGGAGATCCTCAGGTCTCAGAAATGACTGGTTTATAAGGAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTACTGGAGATCCTCAGGTCTCAGAAATGACTGGTTTATAAGGAAAG  200

seq1  AGGGAGTTACATCAGAGTCACAAATTCCAATGGGACTAAATTTTAGTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGTTACATCAGAGTCACAAATTCCAATGGGACTAAATTTTAGTATT  250

seq1  TTATTTCTATCTAAATTATGATTGGACCCATATAAGTAGTTTGAAGTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCTATCTAAATTATGATTGGACCCATATAAGTAGTTTGAAGTGTC  300

seq1  TGTGTTCTTTGAATTTCAGTGGGACAATTCAACGTAAAGTTTCACAAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCTTTGAATTTCAGTGGGACAATTCAACGTAAAGTTTCACAAGTT  350

seq1  AACAATGTTAATGTAATCTGGTAAATATAAGTTTAGAGTCTAATTTCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGTTAATGTAATCTGGTAAATATAAGTTTAGAGTCTAATTTCCTA  400

seq1  TAGGGCTAAAACACATTCCTTCCAAAGAAGAAAGAAGGGGAACAAGGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCTAAAACACATTCCTTCCAAAGAAGAAAGAAGGGGAACAAGGAGA  450

seq1  GAAGTTAAAAATGAAGGCAGCGGGCTGGTGAGATGGCTCAGTGGGTAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTAAAAATGAAGGCAGCGGGCTGGTGAGATGGCTCAGTGGGTAAGA  500

seq1  GCACCCGACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCTAGCAACCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCGACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCTAGCAACCACA  550

seq1  TGGTGGCTCACAACCATCCATAACGAGATCTGACTCCCTCTTTTGGAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCTCACAACCATCCATAACGAGATCTGACTCCCTCTTTTGGAGTG  600

seq1  TCTGAAGACAGCTACAATGTACTTACATATAATAAATCAATAAAATCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGACAGCTACAATGTACTTACATATAATAAATCAATAAAATCTTA  650

seq1  AAAAGAAAAAAAATGAAGGCGGCAGGAGTCTCCCACAGCTGCCTTACTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAAAAATGAAGGCGGCAGGAGTCTCCCACAGCTGCCTTACTGA  700

seq1  TAAAAGCTGCTCACAAGTCTTCAAAAGATACTTTTATCAAACAAAGCCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGCTGCTCACAAGTCTTCAAAAGATACTTTTATCAAACAAAGCCAA  750

seq1  TGCACATATTACTCATACGTATGCATATACTACATACAAATAATTTGATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATATTACTCATACGTATGCATATACTACATACAAATAATTTGATT  800

seq1  TAAAAATATATAACATGTTATATATAATGCATGATAAAATACTTTAGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATATATAACATGTTATATATAATGCATGATAAAATACTTTAGTGT  850

seq1  ATATAAGAATACATAAATTTTCATGACGACATAGAAATATACTGAAGTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGAATACATAAATTTTCATGACGACATAGAAATATACTGAAGTTA  900

seq1  TGTCATTTATTTAACTGACCCATGATTGCTGATTAAATTGCTTCGTGATT  950
      ||||||||||||||||||||||||||||||||||||||||| |||||| |
seq2  TGTCATTTATTTAACTGACCCATGATTGCTGATTAAATTGC-TCGTGA-T  948

seq1  TTTAATGTTGAAATAAATGAGCATCCTTCACTTATGTCCATGGCTATGCG  1000
      |||||||||||||||||||||||| |||||| ||||| ||| ||||||||
seq2  TTTAATGTTGAAATAAATGAGCAT-CTTCAC-TATGT-CAT-GCTATGCG  994

seq1  TGTGACTATCCTGAGGATTAATTACAAGTGTCACATCTCAGTTGACTATT  1050
      ||||||||| |||| |||||  ||| ||||||||||||||| |||||| |
seq2  TGTGACTAT-CTGA-GATTA--TAC-AGTGTCACATCTCAG-TGACTA-T  1037

seq1  GCACATTTGGCCAAGTTAAAAGTCAATTCAGCTAGGCATGCAAGGGGACC  1100
      ||| |||||||  |||| |||||| ||||||||| |||||||  |||| |
seq2  GCA-ATTTGGC--AGTT-AAAGTC-ATTCAGCTA-GCATGCA--GGGA-C  1078

seq1  ACTTGATTCCTCCAAACCAGATGTTTCTAGCACA  1134
      || ||| || |||||    |||||||||||||||
seq2  AC-TGA-TCTTCCAA---CGATGTTTCTAGCACA  1107