BAC Information

Click to search

BAC

Clone NameB6Ng01-082N24
Chromosome3 (Build37)
Map Location 12,070,509 - 12,071,650
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667999
Downstream geneEG621965, LOC100039798, EG668033, LOC668037
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082N24.bB6Ng01-082N24.g
ACCDH897302DH897303
length1,1011,133
definitionDH897302|Mus musculus domesticus DNA, BAC clone: B6Ng01-082N24, 5' end.DH897303|Mus musculus domesticus DNA, BAC clone: B6Ng01-082N24, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagcaagattgtaaaagctaagtcactcccttacacaggaattta
ccatcgcttaggaagaaggaagtttcagaccaaaggagaaaccagaatag
atactatagcagagttacacccatacacatatttacaatggcctaagggg
aaggtggactatacaagagactaaaataggaactatggcaaggacgcgaa
gcccttgaccctggcttctaagattagtgaattttaggtggagcccttgt
tgatcccagctgttatcaatgtattctatcctgggtggttcccgttagac
cttttgtgtttgcattcctctgttttatgtaagattccagttacctcaat
tgtaccttgcgaatatgtcacccaacttccttattgtcctctgcataaaa
agtctgatgccctctgttttatgtaagattccagttacctcaattgtacc
ttgcgaatatgtcacccaacttccttattgtcctctgcataaaaagtctg
atgctcgagttgtaaaattacattcagattccacacaaactctcctgcgt
gtgtgtctgtctgtcatcatccacgctttgcccacccgcgtcgagagacc
ccgttccacgcagacatagggacccagaaggtctgcggcagtcttccatt
ctaattcttggaaattatttgacttttaagacctttctctaagtgtgaaa
aacaagggtctcatttcacaaatgtaatttaaattctacagtcttttttc
tctgacaatttcatacatgtgtatcttgtaatataattttatctactctt
gacttccccatgtttcttcaacatgggccattctaaattcattctctcct
ctctctctttctttctctctctctctctctctctctctctcctcccactc
cccttatcggctctcatgcacactttcttatctagagtactcaacacacc
cccaaaaatgactctccctctccacataggtattcagtcctcagtggttt
ccataatggggaagatgatgagagtcacatatctctgccccggtaggttt
tgactcacccctctgccactccttgacgggaaatgaccggtttgtgaact
g
gaattccttaccatacctggccattgctgacctggtaacatcataaaaat
gagtggaaacaacatgagaactaattcaggtaaatctgagagaagaactt
aatctgacaattaccactagcaatgttgatatttctggtaagaagaaaga
tacgggggaaagacaacaaaacgttttacactttgaaggctcagtagtca
ccctatccttccatgttactggaggtgatcctggaggatgaggaaatcat
aatctataggtcaaggtcattgcaggatatttgatcacactgtgaacccc
aggatgtgttatttactgaaaatacatgtttctagttgtggtacgtctca
aaccttagcacacatctttaatcccactagctgcaatacaaacatgtttt
taatctcaaacaataaagataaagttagtttgtttaaagaagcacccctc
tttgaaaatgatgtctaattgagtgacaaagtaacaaatcagagaaagat
gtgacagaattggatatgcccaactctcaggagaacaaaggaaagggaag
ctatgcaagacagagcagtggagagagaaaggaggaaaaaggtagtttta
cagggagagttttacagagaggagttaaagagagactaagctagacacag
gaagacagaataagcctgagaatgagaatgagccagaggttagaacccag
taccaaagttagtttgagaagatgcagagacagagagaaatttgagccag
tacagttgagttgaaccagatagccagagctcagaaagaattaggaagaa
atgagatgagtttattcagcagcaagtctcagaggctaaaggcagtgtgg
ggcctcagtaagattgcagaggttagaagttccaggactagttattgata
ggtggattgaggctgtaaggcttagaagagagaaattttattagtgaatt
aaattgatttacacaagtgagatttcaaaatgatccctggaaagacacag
aagcaatgctcctgactgtggagaggaagaccatggatcctatactaatg
ctgccatggtaaccatcatagtgtagaactagggagtgctataagaaaca
ttgtgctgaaatacattttaatacccatcatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_12070509_12071650
seq2: B6Ng01-082N24.g_72_1204

seq1  GAATTCCTTACCATACCTGGCCATTGCTGACCTGGTAACATCATAAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTACCATACCTGGCCATTGCTGACCTGGTAACATCATAAAAAT  50

seq1  GAGTGGAAACAACATGAGAACTAATTCAGGTAAATCTGAGAGAAGAACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGAAACAACATGAGAACTAATTCAGGTAAATCTGAGAGAAGAACTT  100

seq1  AATCTGACAATTACCACTAGCAATGTTGATATTTCTGGTAAGAAGAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGACAATTACCACTAGCAATGTTGATATTTCTGGTAAGAAGAAAGA  150

seq1  TACGGGGGAAAGACAACAAAACGTTTTACACTTTGAAGGCTCAGTAGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGGGGAAAGACAACAAAACGTTTTACACTTTGAAGGCTCAGTAGTCA  200

seq1  CCCTATCCTTCCATGTTACTGGAGGTGATCCTGGAGGATGAGGAAATCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATCCTTCCATGTTACTGGAGGTGATCCTGGAGGATGAGGAAATCAT  250

seq1  AATCTATAGGTCAAGGTCATTGCAGGATATTTGATCACACTGTGAACCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATAGGTCAAGGTCATTGCAGGATATTTGATCACACTGTGAACCCC  300

seq1  AGGATGTGTTATTTACTGAAAATACATGTTTCTAGTTGTGGTACGTCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGTGTTATTTACTGAAAATACATGTTTCTAGTTGTGGTACGTCTCA  350

seq1  AACCTTAGCACACATCTTTAATCCCACTAGCTGCAATACAAACATGTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTAGCACACATCTTTAATCCCACTAGCTGCAATACAAACATGTTTT  400

seq1  TAATCTCAAACAATAAAGATAAAGTTAGTTTGTTTAAAGAAGCACCCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTCAAACAATAAAGATAAAGTTAGTTTGTTTAAAGAAGCACCCCTC  450

seq1  TTTGAAAATGATGTCTAATTGAGTGACAAAGTAACAAATCAGAGAAAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAATGATGTCTAATTGAGTGACAAAGTAACAAATCAGAGAAAGAT  500

seq1  GTGACAGAATTGGATATGCCCAACTCTCAGGAGAACAAAGGAAAGGGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAGAATTGGATATGCCCAACTCTCAGGAGAACAAAGGAAAGGGAAG  550

seq1  CTATGCAAGACAGAGCAGTGGAGAGAGAAAGGAGGAAAAAGGTAGTTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCAAGACAGAGCAGTGGAGAGAGAAAGGAGGAAAAAGGTAGTTTTA  600

seq1  CAGGGAGAGTTTTACAGAGAGGAGTTAAAGAGAGACTAAGCTAGACACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGAGTTTTACAGAGAGGAGTTAAAGAGAGACTAAGCTAGACACAG  650

seq1  GAAGACAGAATAAGCCTGAGAATGAGAATGAGCCAGAGGTTAGAACCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACAGAATAAGCCTGAGAATGAGAATGAGCCAGAGGTTAGAACCCAG  700

seq1  TACCAAAGTTAGTTTGAGAAGATGCAGAGACAGAGAGAAATTTGAGCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAAGTTAGTTTGAGAAGATGCAGAGACAGAGAGAAATTTGAGCCAG  750

seq1  TACAGTTGAGTTGAACCAGATAGCCAGAGCTCAGAAAGAATTAGGAAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTTGAGTTGAACCAGATAGCCAGAGCTCAGAAAGAATTAGGAAGAA  800

seq1  ATGAGATGAGTTTATTCAGCAGCAAGTCTCAGAGGCTAAAGGCAGTGT-G  849
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATGAGATGAGTTTATTCAGCAGCAAGTCTCAGAGGCTAAAGGCAGTGTGG  850

seq1  GGCCTCAGTAAGATTGCAGAGGTTAGAAGTTCCAGGACTAGTTATTGATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGCCTCAGTAAGATTGCAGAGGTTAGAAGTTCCAGGACTAGTTATTGATA  900

seq1  AGTGGATTGAGGCTGTAAGGCTTAG-AGAGAGAAATTTTATTAGGTGAAT  948
       |||||||||||||||||||||||| ||||||||||||||||| ||||||
seq2  GGTGGATTGAGGCTGTAAGGCTTAGAAGAGAGAAATTTTATTA-GTGAAT  949

seq1  TAAAATTGATTTACACAAAGTGAGATTTCAAAATGATCCCCTGGAAAGAC  998
      | |||||||||||||| |||||||||||||||||||| ||||||||||||
seq2  T-AAATTGATTTACAC-AAGTGAGATTTCAAAATGAT-CCCTGGAAAGAC  996

seq1  AACAGGAAGCAATGCTTCCTGACTGTTGAGA-GAAGACCATGGATCCTAA  1047
       ||| |||||||||| |||||||||| |||| ||||||||||||||||| 
seq2  -ACA-GAAGCAATGC-TCCTGACTGTGGAGAGGAAGACCATGGATCCTA-  1042

seq1  TTACTAATGCTTGCCAT-GTAACCATCATAGTGTAGAAACTAGGAGTTGC  1096
       ||||||||| |||||| |||||||||||||||||| |||||||   |||
seq2  -TACTAATGC-TGCCATGGTAACCATCATAGTGTAG-AACTAGGGAGTGC  1089

seq1  TATAAGAAACATTGTGCTGATATAACATTTTTAATACCCATCATGA  1142
      |||||||||||||||||||| || ||| ||||||||||||||||||
seq2  TATAAGAAACATTGTGCTGAAAT-ACA-TTTTAATACCCATCATGA  1133