BAC Information

Click to search

BAC

Clone NameB6Ng01-082P14
Chromosome3 (Build37)
Map Location 159,533,182 - 159,580,491
singlet/doubletdoublet
Overlap geneGpr177
Upstream geneLOC668905, LOC668907, Depdc1a, Rpe65
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082P14.bB6Ng01-082P14.g
ACCDH897369DH897370
length1,1241,141
definitionDH897369|Mus musculus domesticus DNA, BAC clone: B6Ng01-082P14, 5' end.DH897370|Mus musculus domesticus DNA, BAC clone: B6Ng01-082P14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(159,533,182 - 159,534,319)(159,579,330 - 159,580,491)
sequence
gaattcatcataattatatttaaatttatagtaattatttatgcctatat
tttttatcattcacatatctcacattattggtgcctataggtctacttaa
gtagctgacagtgtctagcatgtaatgggtgctcacaatagtcaaatatg
aagtaatgtgtttgaaggatcattttttttcctatgaggtagcttaccaa
ccctgaatttgtccagatcttactgatttcaaatcaatttaaaattcaat
atattgtagtgccatatttcaaaaacattgttgaaatacagataagggag
gaaaatatgacctgtgtttgatgtaataatgtgaacagagcaatgagtgg
gccaacctttttatgaatactttctatagcttacctgcatgcatacatac
cttcagtgttcttagccaccaatataagaggctaagagttcacagtgaca
agacataattgttttttgttacattgtccttcttgctaacttgtattggg
atgagtcagcttctagtttttacattttcaattaaattatattctataga
tgtgttcagaagacttataataagttctgaggcagctaggtgatactgct
ttcctagtcttcagatactgaagagtgattttttttttttactctttatt
tgagcagacatgacttggtttatgaacctgaatctaggtaaccccctttt
aacactattgattttcagactcatagtagggactaagacttttgttgcaa
atacagtggactgtgtcttattcaaaaaaattacagataatttttacttt
atttagttctttttgtcatattttaaaatcattttcaaaaagaacttaaa
attcaggtttttttctggttcttttgagatagcatctcactatgtaggtc
tgtctcttctggaattcacttgtagactacactaacctcaaactaccaga
gatcctcctgctctgctttctgggttctagattaaagactgtgccacatg
cctgctcatttcaacatattttgattctagatactgttttatgattatct
agtcacatttgctgcatctatgtattcccagcaacaagaaaaatttgcaa
tatggctctctttctccttctcct
gaattcaaagacatcatatccccttagagttgaaatccacccaccagact
attgcagctaatataaaagcaggctagagcccaatactggagcaatggta
aattaatctttctctccaaagaaaagctgcaaattctgttgtaagatagt
ttccatcactttaaaatgtgcaacagttaaacatgtacaagattaaattc
agcaaggcacagtcatcttaggaattaatccctttagaatttaggtgaaa
tgatttttgcagaattaattcagtgggaaaggcagtggcctgaaagtcgg
tacttgaagactccagttttgtaaaagggcagaggcaggcctgaagaatg
gaagtgctcttcccgttcatatcccagacagcatggtccatcttactgaa
gactccacttctgaatgggtgattcctgttctcaaaatagggaattcagt
aggctgcttaagaacagcatattgctaagtggctggagaaccaggaaaca
taatggtgacatgaggaaactagccaaaagtggagtgaagtctaacctaa
tccctctgcttgaatatgggtgtattgagttaaaggtgtatccattagct
agagagattgctcagctgataaaagatatttgccactgaagctgatgatc
tgagctttatccctggtggaaggaggaaactgactcctctcacacatgtg
ctccataaggtaaaaaaatgtgtaaacaaatgtaggtatgttgttttatg
aatttatacatgtagtcaaccctgaatagagccagaaactcaatacagcc
cagtctatatagccaacagaggaggctcaaaacttgtagtcccttgtgtg
gaattaaagggatcagaactgagcagaaataaaagtatccttattttcat
tttcttttaaaaattatttatttattttttaattttcattttaaatttaa
gttggtacttctttagttatgaatgtccaaacaatatgatgatatagcat
atcgacaaatcatatgtgtatcccatttagtgctaagacattttataata
agtctagtaggttatctgtaatgggttgtgttgtgaatgcattaatatga
atctccttgaaatcgaaaaattttatttactatagaagcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_159533182_159534319
seq2: B6Ng01-082P14.b_47_1170

seq1  GAATTCATCATAATTATATTTAAATTTATAGTAATTATTTATGCCTATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCATAATTATATTTAAATTTATAGTAATTATTTATGCCTATAT  50

seq1  TTTTTATCATTCACATATCTCACATTATTGGTGCCTATAGGTCTACTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATCATTCACATATCTCACATTATTGGTGCCTATAGGTCTACTTAA  100

seq1  GTAGCTGACAGTGTCTAGCATGTAATGGGTGCTCACAATAGTCAAATATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTGACAGTGTCTAGCATGTAATGGGTGCTCACAATAGTCAAATATG  150

seq1  AAGTAATGTGTTTGAAGGATCATTTTTTTTCCTATGAGGTAGCTTACCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAATGTGTTTGAAGGATCATTTTTTTTCCTATGAGGTAGCTTACCAA  200

seq1  CCCTGAATTTGTCCAGATCTTACTGATTTCAAATCAATTTAAAATTCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAATTTGTCCAGATCTTACTGATTTCAAATCAATTTAAAATTCAAT  250

seq1  ATATTGTAGTGCCATATTTCAAAAACATTGTTGAAATACAGATAAGGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTAGTGCCATATTTCAAAAACATTGTTGAAATACAGATAAGGGAG  300

seq1  GAAAATATGACCTGTGTTTGATGTAATAATGTGAACAGAGCAATGAGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATATGACCTGTGTTTGATGTAATAATGTGAACAGAGCAATGAGTGG  350

seq1  GCCAACCTTTTTATGAATACTTTCTATAGCTTACCTGCATGCATACATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACCTTTTTATGAATACTTTCTATAGCTTACCTGCATGCATACATAC  400

seq1  CTTCAGTGTTCTTAGCCACCAATATAAGAGGCTAAGAGTTCACAGTGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTGTTCTTAGCCACCAATATAAGAGGCTAAGAGTTCACAGTGACA  450

seq1  AGACATAATTGTTTTTTGTTACATTGTCCTTCTTGCTAACTTGTATTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATAATTGTTTTTTGTTACATTGTCCTTCTTGCTAACTTGTATTGGG  500

seq1  ATGAGTCAGCTTCTAGTTTTTACATTTTCAATTAAATTATATTCTATAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTCAGCTTCTAGTTTTTACATTTTCAATTAAATTATATTCTATAGA  550

seq1  TGTGTTCAGAAGACTTATAATAAGTTCTGAGGCAGCTAGGTGATACTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCAGAAGACTTATAATAAGTTCTGAGGCAGCTAGGTGATACTGCT  600

seq1  TTCCTAGTCTTCAGATACTGAAGAGTGATTTTTTTTTTTTACTCTTTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGTCTTCAGATACTGAAGAGTGATTTTTTTTTTTTACTCTTTATT  650

seq1  TGAGCAGACATGACTTGGTTTATGAACCTGAATCTAGGTAACCCCCTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGACATGACTTGGTTTATGAACCTGAATCTAGGTAACCCCCTTTT  700

seq1  AACACTATTGATTTTCAGACTCATAGTAGGGACTAAGACTTTTGTTGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTATTGATTTTCAGACTCATAGTAGGGACTAAGACTTTTGTTGCAA  750

seq1  ATACAGTGGACTGTGTCTTATTCAAAAAAATTACAGATAATTTTTACTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTGGACTGTGTCTTATTCAAAAAAATTACAGATAATTTTTACTTT  800

seq1  ATTTAGTTCTTTTTGTCATATTTTAAAATCATTTTCAAAAAGAACTTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTTCTTTTTGTCATATTTTAAAATCATTTTCAAAAAGAACTTAAA  850

seq1  ATTCAGGTTTTTTTCTGGTTCTTTTGAGATAGCATCTCACTATGTAGGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGGTTTTTTTCTGGTTCTTTTGAGATAGCATCTCACTATGTAGGTC  900

seq1  TGTCTCTTCTGGAATTCACTTGTAGACTACACTAACCTCAAACTACCAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTTCTGGAATTCACTTGTAGACTACACTAACCTCAAACTACCAGA  950

seq1  GATCCTCCTGCTTCTGCTTTCTGGGTTCTAGGATTAAAAGACTGTGCCAC  1000
      ||||||||||| |||||||||||||||||| |||| ||||||||||||| 
seq2  GATCCTCCTGC-TCTGCTTTCTGGGTTCTA-GATT-AAAGACTGTGCCA-  996

seq1  CATGCCTGGCTCATTTCAAACATATTTTGATTCTAGATACTGTTTTATGA  1050
      ||||||| ||||||||| ||||||||||||||||||||||||||||||||
seq2  CATGCCT-GCTCATTTC-AACATATTTTGATTCTAGATACTGTTTTATGA  1044

seq1  TTATCTAGTCACAATTTTGGCTGCATCTAATGATATCCCAGCAACCAGAA  1100
      |||||||||||||   || ||||||||| |||   |||||||||| || |
seq2  TTATCTAGTCACA---TTTGCTGCATCT-ATGTATTCCCAGCAACAAG-A  1089

seq1  AAAAATTGCATATTTGGCTCCTTCTTTCTCCTTCTCCT  1138
      |||| ||||| || ||||||  ||||||||||||||||
seq2  AAAATTTGCA-ATATGGCTC--TCTTTCTCCTTCTCCT  1124

seq1: chr3_159579330_159580491
seq2: B6Ng01-082P14.g_69_1209 (reverse)

seq1  ATGCTTCTAAATAAGTAAAATAAAATATTTTAGATTTCAAAGAGAATCAT  50
      |||||||||    ||| ||||||||| |||| |||||||| |||| ||||
seq2  ATGCTTCTA---TAGT-AAATAAAAT-TTTTCGATTTCAAGGAGATTCAT  45

seq1  ATATACATGCATTCAACACACACACACATTACAGATAACTTAACTTAGAC  100
      || || |||||||||  ||||| || ||||||||||||| ||   |||||
seq2  AT-TA-ATGCATTCACAACACA-ACCCATTACAGATAACCTA--CTAGAC  90

seq1  TTATTATAAAAATGTCTTTAGCACTTAATTGGGATACACATATGATTTGT  150
      ||||||| |||||||| ||||||| ||| |||||||||||||||||||||
seq2  TTATTAT-AAAATGTC-TTAGCAC-TAAATGGGATACACATATGATTTGT  137

seq1  CGATAATGCTAATATCATCAATATTTGTTTTGGACATTCATAACTAAAGG  200
      |||| ||||| |||||||| |||||   |||||||||||||||||||| |
seq2  CGAT-ATGCT-ATATCATC-ATATT--GTTTGGACATTCATAACTAAA-G  181

seq1  AAGTACCAACTTAAATTTAAAAATGAAAATTAAAAAATAAATAAATAATT  250
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AAGTACCAACTTAAATTT-AAAATGAAAATTAAAAAATAAATAAATAATT  230

seq1  TTTAAAAAGAAAATGAAAATAAGGATACTTTTATTTCTGCTCAGTTCTGA  300
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTT-AAAAGAAAATGAAAATAAGGATACTTTTATTTCTGCTCAGTTCTGA  279

seq1  TCCCTTTAATTCCACACAAGGGACTACAAGTTTTGAGCCTCCTCTGTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTAATTCCACACAAGGGACTACAAGTTTTGAGCCTCCTCTGTTGG  329

seq1  CTATATAGACTGGGCTGTATTGAGTTTCTGGCTCTATTCAGGGTTGACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATAGACTGGGCTGTATTGAGTTTCTGGCTCTATTCAGGGTTGACTA  379

seq1  CATGTATAAATTCATAAAACAACATACCTACATTTGTTTACACATTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATAAATTCATAAAACAACATACCTACATTTGTTTACACATTTTTT  429

seq1  TACCTTATGGAGCACATGTGTGAGAGGAGTCAGTTTCCTCCTTCCACCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTATGGAGCACATGTGTGAGAGGAGTCAGTTTCCTCCTTCCACCAG  479

seq1  GGATAAAGCTCAGATCATCAGCTTCAGTGGCAAATATCTTTTATCAGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAAGCTCAGATCATCAGCTTCAGTGGCAAATATCTTTTATCAGCTG  529

seq1  AGCAATCTCTCTAGCTAATGGATACACCTTTAACTCAATACACCCATATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATCTCTCTAGCTAATGGATACACCTTTAACTCAATACACCCATATT  579

seq1  CAAGCAGAGGGATTAGGTTAGACTTCACTCCACTTTTGGCTAGTTTCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAGAGGGATTAGGTTAGACTTCACTCCACTTTTGGCTAGTTTCCTC  629

seq1  ATGTCACCATTATGTTTCCTGGTTCTCCAGCCACTTAGCAATATGCTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCACCATTATGTTTCCTGGTTCTCCAGCCACTTAGCAATATGCTGTT  679

seq1  CTTAAGCAGCCTACTGAATTCCCTATTTTGAGAACAGGAATCACCCATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGCAGCCTACTGAATTCCCTATTTTGAGAACAGGAATCACCCATTC  729

seq1  AGAAGTGGAGTCTTCAGTAAGATGGACCATGCTGTCTGGGATATGAACGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGGAGTCTTCAGTAAGATGGACCATGCTGTCTGGGATATGAACGG  779

seq1  GAAGAGCACTTCCATTCTTCAGGCCTGCCTCTGCCCTTTTACAAAACTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCACTTCCATTCTTCAGGCCTGCCTCTGCCCTTTTACAAAACTGG  829

seq1  AGTCTTCAAGTACCGACTTTCAGGCCACTGCCTTTCCCACTGAATTAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCAAGTACCGACTTTCAGGCCACTGCCTTTCCCACTGAATTAATT  879

seq1  CTGCAAAAATCATTTCACCTAAATTCTAAAGGGATTAATTCCTAAGATGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAAAATCATTTCACCTAAATTCTAAAGGGATTAATTCCTAAGATGA  929

seq1  CTGTGCCTTGCTGAATTTAATCTTGTACATGTTTAACTGTTGCACATTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCCTTGCTGAATTTAATCTTGTACATGTTTAACTGTTGCACATTTT  979

seq1  AAAGTGATGGAAACTATCTTACAACAGAATTTGCAGCTTTTCTTTGGAGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGATGGAAACTATCTTACAACAGAATTTGCAGCTTTTCTTTGGAGA  1029

seq1  GAAAGATTAATTTACCATTGCTCCAGTATTGGGCTCTAGCCTGCTTTTAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATTAATTTACCATTGCTCCAGTATTGGGCTCTAGCCTGCTTTTAT  1079

seq1  ATTAGCTGCAATAGTCTGGTGGGTGGATTTCAACTCTAAGGGGATATGAT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCTGCAATAGTCTGGTGGGTGGATTTCAACTCTAAGGGGATATGAT  1129

seq1  GTCTTTGAATTC  1162
      ||||||||||||
seq2  GTCTTTGAATTC  1141