BAC Information

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BAC

Clone NameB6Ng01-083G20
Chromosome3 (Build37)
Map Location 109,395,541 - 109,506,268
singlet/doubletdoublet
Overlap geneVav3
Upstream geneWdr47, LOC100043166, Clcc1, Gpsm2, 4921525H12Rik, Stxbp3a, Fndc7, Prpf38b, 4921515J06Rik, B430201A12Rik, 4930443G12Rik, Slc25a24
Downstream geneNtng1, LOC100043181, LOC100043183, Prmt6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083G20.bB6Ng01-083G20.g
ACCDH897692DH897693
length1,1311,161
definitionDH897692|Mus musculus domesticus DNA, BAC clone: B6Ng01-083G20, 5' end.DH897693|Mus musculus domesticus DNA, BAC clone: B6Ng01-083G20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,505,130 - 109,506,268)(109,395,541 - 109,396,700)
sequence
gaattccagagtcagagtttgtggaggtttgactgcttttcataaaatgt
attttagaaagtttatttctgatgagtcatacccttataatattgttact
tgtgagcccatgagagtatgtgtgtttgtgtgtgtgtgtgcataaacaca
cacatatacatatatgatcattatttataaatgtatgctatgtacatata
taatttcatagcaatgttctaagcacacatcaagagatacagtatatttt
aatggagctgtatttctttcaaatttataaaatgctgttatttttacaat
tcatgatatgatggcacacacgacaaagtctatacaaacctcatcagtga
aacacaagactacaaaggactatcttgctcaagaaggaatacaaccatct
tcctctcattccaacactttcctctagcccagaagccagagcttactttc
ctcattaggaacaattcctttgtaggtggagattttgagaaatacagttc
ttaacagttgttgttgttgttgttttgtttttttttttttaatatgagag
acgctgtttgagccctgtgcaccatgtgcatggaggagccctggaggctg
aggatgcttcgcctcccttggaactggagttacaggcacttgtgagccac
cgtgttggtacttggaaccaaaacctgattctctgcaagagtagtatata
cttttaaccatctttccagctccaaactgtttgatttttttttttttttt
acccaggattctattcctttctgaaggtccaagaggatgtccatgaccat
tcatactaaaattctattttagtggcatagaataggaaaatcctgaaagg
gaacaagattgtcaaagcagatctcagcagagactcaccaggtgggttga
tcaaagacaaacaaattaccccagaggtgttatgacagaacagtgaactt
gccatgtctagtgacagacacatcaagggatctggttccttagcatggaa
atcccaacctgcattgcagcagatggcagagagaagaaagcaagcttctg
ctaccttgtgcaaaaggaatctttctaatttccacccaaatcaatccacg
tgaactttccattattgatgcattctctgat
gaattcagaaaggaagttcccctataagtgagttgttttgttcctatcag
aactcttctcccttcctgttctttttctgtggttctttagtctctgctat
tagaaccaccacaaagggagagaccaagatgttataaggacacagtggag
ggtacagcctgaggtttatgagcatcaagaaatacacaaggcccacatcc
agctataatagcatgggcaattctgtctgcccctgactgagccgtcagag
ataaagagggggtcacatggatgcctagggagggtcactttaaaactcaa
aatagctgaggaaaggaggtgggacagagaagaattggaagaggtttctg
gaaggtgaactagaatcaaagttcaggtaggggtttttctggcttccgtt
ttaaagaacactagagaacacgcttagcaagtgtgtcttttcttgggcat
tcttttgaccttctcagctttggacattctctcttggggattttcttggt
agagtcagcactgaatccttcacagatcctgacacccacactcccttgtt
gcaaaagagtagatgagcattaacatgctgcataagtaacctgggaactg
ttgcacaaagcctcggtggcagggcaccgccagctcagattccatttaac
tcgtgtcacggcagatgatagacttgaccttaattagacattcctgctga
atcaggaagatttttctaaaatttcaccttttgttttgcaagctgttcag
atgctcatccctggattctggttgtggtgtgctcttgctgcagtgtggaa
aacatttgtcaattcactagtctcttctctctatatatatatacttttgc
atgctttactgagcacaatcactttaaattcttatatgcataatctgtat
gtccatgtacacgttggtgacataattgtggactgaggtttcaagtgact
ccataatgcactttatatttacactattttctgttttcacaataaatgag
aaaagctatgctgatgattaaagcatctccaaatctaacaaaagtgatta
aacacagtttctataataactgtgcacattctccctccgtacgtgtttat
atagatctagttcttttatatgcccagtacaatgtagatctatataatta
ggcctttattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_109505130_109506268
seq2: B6Ng01-083G20.b_46_1176 (reverse)

seq1  ATCAGAGAAATGGCATTCAATAATGCGAAAAGTCTACGTGGAATGATTTG  50
      |||||||||   ||| ||||||||  | |||||  ||||||| |||||||
seq2  ATCAGAGAA--TGCA-TCAATAAT--GGAAAGTTCACGTGGATTGATTTG  45

seq1  TGTTGGGAATTAGCAAGATTTCCCTCTGGCACAGGGTAGGCAGAAGCTTG  100
       | ||| |||||| ||||||  ||| | ||||| |||| |||||||||||
seq2  -GGTGGAAATTAGAAAGATT--CCTTTTGCACAAGGTA-GCAGAAGCTTG  91

seq1  CCTTCTTCTCTCTGCCCATCTGCTGGCAATGGCAGGTTGGGATTTCCCAT  150
      | |||||||||||| ||||||||| ||||| ||||||||||||||||   
seq2  CTTTCTTCTCTCTG-CCATCTGCT-GCAAT-GCAGGTTGGGATTTCC--A  136

seq1  TGCTAA-GAACCAGATCCCTTGATTGTGTCTGTCACTAGACATGGC-AGG  198
      |||||| |||||||||||||||| |||||||||||||||||||||| || 
seq2  TGCTAAGGAACCAGATCCCTTGA-TGTGTCTGTCACTAGACATGGCAAGT  185

seq1  TCACTGTTCTGTCATAACACCTCTGGGGTAATTTGTTTGTCCTTGATCAA  248
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCACTGTTCTGTCATAACACCTCTGGGGTAATTTGTTTGTCTTTGATCAA  235

seq1  CCCACCTGGTGAGTCTCTGCTGAGATCTGCTTTGAC-ATCTTGTTCCCTT  297
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CCCACCTGGTGAGTCTCTGCTGAGATCTGCTTTGACAATCTTGTTCCCTT  285

seq1  TCAGGATTTTCCTATTCTATGCCACT-AAATAGAATTTTAGTATGAATGG  346
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TCAGGATTTTCCTATTCTATGCCACTAAAATAGAATTTTAGTATGAATGG  335

seq1  TCATGGACATCCTCTTGGACCTTCAG-AAGGAATAGAATCCTGGGT--AA  393
      |||||||||||||||||||||||||| |||||||||||||||||||  ||
seq2  TCATGGACATCCTCTTGGACCTTCAGAAAGGAATAGAATCCTGGGTAAAA  385

seq1  AAAAAAAAAAAATCAAACAGTTTGGAGCTGGAAAGATGGTTAAAAGTATA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAATCAAACAGTTTGGAGCTGGAAAGATGGTTAAAAGTATA  435

seq1  TACTACTCTTGCAGAGAATCAGGTTTTGGTTCCAAGTACCAACACGGTGG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACTCTTGCAGAGAATCAGGTTTTGGTTCCAAGTACCAACACGGTGG  485

seq1  CTCACAAGTGCCTGTAACTCCAGTTCCAAGGGAGGCGAAGCATCCTCAGC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAAGTGCCTGTAACTCCAGTTCCAAGGGAGGCGAAGCATCCTCAGC  535

seq1  CTCCAGGGCTCCTCCATGCACATGGTGCACAGGGCTCAAACAGCGTCTCT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGGCTCCTCCATGCACATGGTGCACAGGGCTCAAACAGCGTCTCT  585

seq1  CATATTAAAAAAAAAAAAACAAAACAACAACAACAACAACTGTTAAGAAC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTAAAAAAAAAAAAACAAAACAACAACAACAACAACTGTTAAGAAC  635

seq1  TGTATTTCTCAAAATCTCCACCTACAAAGGAATTGTTCCTAATGAGGAAA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTCTCAAAATCTCCACCTACAAAGGAATTGTTCCTAATGAGGAAA  685

seq1  GTAAGCTCTGGCTTCTGGGCTAGAGGAAAGTGTTGGAATGAGAGGAAGAT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCTCTGGCTTCTGGGCTAGAGGAAAGTGTTGGAATGAGAGGAAGAT  735

seq1  GGTTGTATTCCTTCTTGAGCAAGATAGTCCTTTGTAGTCTTGTGTTTCAC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTATTCCTTCTTGAGCAAGATAGTCCTTTGTAGTCTTGTGTTTCAC  785

seq1  TGATGAGGTTTGTATAGACTTTGTCGTGTGTGCCATCATATCATGAATTG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAGGTTTGTATAGACTTTGTCGTGTGTGCCATCATATCATGAATTG  835

seq1  TAAAAATAACAGCATTTTATAAATTTGAAAGAAATACAGCTCCATTAAAA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATAACAGCATTTTATAAATTTGAAAGAAATACAGCTCCATTAAAA  885

seq1  TATACTGTATCTCTTGATGTGTGCTTAGAACATTGCTATGAAATTATATA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTGTATCTCTTGATGTGTGCTTAGAACATTGCTATGAAATTATATA  935

seq1  TGTACATAGCATACATTTATAAATAATGATCATATATGTATATGTGTGTG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATAGCATACATTTATAAATAATGATCATATATGTATATGTGTGTG  985

seq1  TTTATGCACACACACACACAAACACACATACTCTCATGGGCTCACAAGTA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGCACACACACACACAAACACACATACTCTCATGGGCTCACAAGTA  1035

seq1  ACAATATTATAAGGGTATGACTCATCAGAAATAAACTTTCTAAAATACAT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATTATAAGGGTATGACTCATCAGAAATAAACTTTCTAAAATACAT  1085

seq1  TTTATGAAAAGCAGTCAAACCTCCACAAACTCTGACTCTGGAATTC  1139
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGAAAAGCAGTCAAACCTCCACAAACTCTGACTCTGGAATTC  1131

seq1: chr3_109395541_109396700
seq2: B6Ng01-083G20.g_69_1229

seq1  GAATTCAGAAAGGAAGTTCCCCTATAAGTGAGTTGTTTTGTTCCTATCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAAGGAAGTTCCCCTATAAGTGAGTTGTTTTGTTCCTATCAG  50

seq1  AACTCTTCTCCCTTCCTGTTCTTTTTCTGTGGTTCTTTAGTCTCTGCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTCTCCCTTCCTGTTCTTTTTCTGTGGTTCTTTAGTCTCTGCTAT  100

seq1  TAGAACCACCACAAAGGGAGAGACCAAGATGTTATAAGGACACAGTGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACCACCACAAAGGGAGAGACCAAGATGTTATAAGGACACAGTGGAG  150

seq1  GGTACAGCCTGAGGTTTATGAGCATCAAGAAATACACAAGGCCCACATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACAGCCTGAGGTTTATGAGCATCAAGAAATACACAAGGCCCACATCC  200

seq1  AGCTATAATAGCATGGGCAATTCTGTCTGCCCCTGACTGAGCCGTCAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATAATAGCATGGGCAATTCTGTCTGCCCCTGACTGAGCCGTCAGAG  250

seq1  ATAAAGAGGGGGTCACATGGATGCCTAGGGAGGGTCACTTTAAAACTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGAGGGGGTCACATGGATGCCTAGGGAGGGTCACTTTAAAACTCAA  300

seq1  AATAGCTGAGGAAAGGAGGTGGGACAGAGAAGAATTGGAAGAGGTTTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCTGAGGAAAGGAGGTGGGACAGAGAAGAATTGGAAGAGGTTTCTG  350

seq1  GAAGGTGAACTAGAATCAAAGTTCAGGTAGGGGTTTTTCTGGCTTCCGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGAACTAGAATCAAAGTTCAGGTAGGGGTTTTTCTGGCTTCCGTT  400

seq1  TTAAAGAACACTAGAGAACACGCTTAGCAAGTGTGTCTTTTCTTGGGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAACACTAGAGAACACGCTTAGCAAGTGTGTCTTTTCTTGGGCAT  450

seq1  TCTTTTGACCTTCTCAGCTTTGGACATTCTCTCTTGGGGATTTTCTTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGACCTTCTCAGCTTTGGACATTCTCTCTTGGGGATTTTCTTGGT  500

seq1  AGAGTCAGCACTGAATCCTTCACAGATCCTGACACCCACACTCCCTTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCAGCACTGAATCCTTCACAGATCCTGACACCCACACTCCCTTGTT  550

seq1  GCAAAAGAGTAGATGAGCATTAACATGCTGCATAAGTAACCTGGGAACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGAGTAGATGAGCATTAACATGCTGCATAAGTAACCTGGGAACTG  600

seq1  TTGCACAAAGCCTCGGTGGCAGGGCACCGCCAGCTCAGATTCCATTTAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACAAAGCCTCGGTGGCAGGGCACCGCCAGCTCAGATTCCATTTAAC  650

seq1  TCGTGTCACGGCAGATGATAGACTTGACCTTAATTAGACATTCCTGCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGTCACGGCAGATGATAGACTTGACCTTAATTAGACATTCCTGCTGA  700

seq1  ATCAGGAAGATTTTTCTAAAATTTCACCTTTTGTTTTGCAAGCTGTTCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGAAGATTTTTCTAAAATTTCACCTTTTGTTTTGCAAGCTGTTCAG  750

seq1  ATGCTCATCCCTGGATTCTGGTTGTGGTGTGCTCTTGCTGCAGTGTGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCATCCCTGGATTCTGGTTGTGGTGTGCTCTTGCTGCAGTGTGGAA  800

seq1  AACA-TTGTCAATTCACTAGTCTCTTCTCTCTATATATATATACTTTTGC  849
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTGTCAATTCACTAGTCTCTTCTCTCTATATATATATACTTTTGC  850

seq1  ATGCTTTACTGAGCACAATCACTTTAAATTCTTATATGCATAATCTGTAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTACTGAGCACAATCACTTTAAATTCTTATATGCATAATCTGTAT  900

seq1  GTCCATGTACACGTTGGTGACATAATTGTGGACTGAGGTTTCAAGTGACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATGTACACGTTGGTGACATAATTGTGGACTGAGGTTTCAAGTGACT  950

seq1  CCATAATGCACTTTATATTTACACTATTTTCTGTTTTCACAATAAATGAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAATGCACTTTATATTTACACTATTTTCTGTTTTCACAATAAATGAG  1000

seq1  AAAAGCTATGCTGATGATTTAAAGCATCTCCAAATCTAACAAAAGTGA-T  1048
      ||||||||||||||||| |||||||||||||||||||||||||||||| |
seq2  AAAAGCTATGCTGATGA-TTAAAGCATCTCCAAATCTAACAAAAGTGATT  1049

seq1  AAACACAGTTTCTATATAACCTGTGCACATTCTCC--TCGTACGTG-TTA  1095
      ||||||||||||||||  | |||||||||||||||   |||||||| |||
seq2  AAACACAGTTTCTATAATAACTGTGCACATTCTCCCTCCGTACGTGTTTA  1099

seq1  TATAGTTTCTAGGTTCTTTATAATGCCCAGTACAATGTAGATTCTATATA  1145
      |||||  |||| |||||||   ||||||||||||||||||| ||||||||
seq2  TATAG-ATCTA-GTTCTTTTATATGCCCAGTACAATGTAGA-TCTATATA  1146

seq1  ATAGGGCTTTTATTG  1160
      ||  ||| |||||||
seq2  ATTAGGCCTTTATTG  1161