BAC Information

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BAC

Clone NameB6Ng01-083I05
Chromosome3 (Build37)2 (Build37)
Map Location 125,513,000 - 125,514,168165,005,622 - 165,005,673
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668820, Ndst4
Downstream geneUgt8a, Arsj, Camk2d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083I05.bB6Ng01-083I05.g
ACCDH897756DH897757
length1,157119
definitionDH897756|Mus musculus domesticus DNA, BAC clone: B6Ng01-083I05, 5' end.DH897757|Mus musculus domesticus DNA, BAC clone: B6Ng01-083I05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(125,513,000 - 125,514,168)(165,005,622 - 165,005,673)
sequence
gaattcagactgcatctcatggttttcgctgaaaatatttactgagcaaa
ataataaagggtatgagactcatttcacacagaaaacctaagccacctgt
gattactggtgtcaatgtcctgtatagccagtgtccagacggtgtatcta
tggaactcaagcaacagtgactaatttagattttaattataggggtaatc
acaggcatagtgggattgtcaattgaaatgtacaatgagtaatatttggt
ataagatgcaaaagaaacacataacacttaaaggtataccaaaattagta
ggtttctagaggacaaataagcaacaaaatgactaggaggaatgttttgt
taattagaagagaaatacatgttatgtaagaatttaatatatgtaagtat
ttccagaaagagggataatacaaagcaaacaattgtagcaaagtaattaa
aataagttgatttaaaaactttaaattgccttcattgcctgagtgaattg
ttggagggaataagtagatcactgtgccagccaagatattatacacaata
agcatccagtactatgttctggattacttctatttttaagtgagtatccc
tttactaaatagcaaaatgaagttagacgtgtgtaaagcaggtataggga
ctgaagacctaactttctcataacagttgacataaagtgtgcgaaactcc
aaccacacggccacaacaatctgatatatccttactcctcaagttgagaa
ctgcaagaagtcagttcatcattttctgcccaagtgttttcactgccagg
tataatggccgctttcaccgatacatctgtatgctgcttatatatttcct
gtgggatcttgaagacaacctaaatcctggaactgtgccttgccaatgcg
ctctcaaagttaaaaaaaaaactcttgtcttatttatttgaaaacaaaat
aatcgcctatattcatggtgctttcttccttggggtgcattcccagcaga
ctactgtcgtttatggcaagacaatggaatactcatagtagaggatgtgg
taggcccaacactgtcttgtttcccagtgtacctcagtaagctatagcag
agttggtactccataagtagtaacatttctgataatgatgtaggaataga
tggatgc
ccagagacctgggacacagaaggttcccaggagtcaatgtgggtgatctt
aggaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaagg
aaggaaggaaggaaggaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_125513000_125514168
seq2: B6Ng01-083I05.b_47_1203 (reverse)

seq1  GCATCCATCTATATCCTTACATTCATTTAATCAGGAAATGGTTACTACTT  50
      |||||||||||| ||| |||| |||||  |||| ||||| ||||||||||
seq2  GCATCCATCTAT-TCC-TACA-TCATT--ATCA-GAAAT-GTTACTACTT  43

seq1  ATTGAGTACCAACTCTGCTTATTAGCCTTACTGAGGGTACACTGGGAAAC  100
      || ||||||||||||||||   ||| |||||||| |||||||||||||||
seq2  ATGGAGTACCAACTCTGCT--ATAG-CTTACTGA-GGTACACTGGGAAAC  89

seq1  AAGACAGTGTTTGGGCTTACACATCCTCTACTAATGAGTATTCCATTGTC  150
      ||||||||||| || ||  ||||||||||||| |||||||||||||||||
seq2  AAGACAGTGTTGGGCCTACCACATCCTCTACT-ATGAGTATTCCATTGTC  138

seq1  TTGCCATAAACGACAGTAGTCTGCTTGGAATGCA-CACAAGGAAGAAAGC  199
      ||||||||||||||||||||||||| |||||||| | |||||||||||||
seq2  TTGCCATAAACGACAGTAGTCTGCTGGGAATGCACCCCAAGGAAGAAAGC  188

seq1  ACCATGAATATAGGCGATTATTTTGTGTTCAAATAAATAAGACAAGAGTT  249
      |||||||||||||||||||||||||| ||||||||||||||||||||| |
seq2  ACCATGAATATAGGCGATTATTTTGTTTTCAAATAAATAAGACAAGAG-T  237

seq1  TTTTTTTTTAACTTTGAGAGCGCATTGGCAAGGCACAGTTCCAGGATTTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTAACTTTGAGAGCGCATTGGCAAGGCACAGTTCCAGGATTTA  287

seq1  GGTTGTCTTCAAGATCCCACAGGAAATATATAAGCAGCATACAGATGTAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTCTTCAAGATCCCACAGGAAATATATAAGCAGCATACAGATGTAT  337

seq1  CGGTGAAAGCGGCCATTATACCTGGCAGTGAAAACACTTGGGCAGAAAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGAAAGCGGCCATTATACCTGGCAGTGAAAACACTTGGGCAGAAAAT  387

seq1  GATGAACTGACTTCTTGCAGTTCTCAACTTGAGGAGTAAGGATATATCAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAACTGACTTCTTGCAGTTCTCAACTTGAGGAGTAAGGATATATCAG  437

seq1  ATTGTTGTGGCCGTGTGGTTGGAGTTTCGCACACTTTATGTCAACTGTTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGTGGCCGTGTGGTTGGAGTTTCGCACACTTTATGTCAACTGTTA  487

seq1  TGAGAAAGTTAGGTCTTCAGTCCCTATACCTGCTTTACACACGTCTAACT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAGTTAGGTCTTCAGTCCCTATACCTGCTTTACACACGTCTAACT  537

seq1  TCATTTTGCTATTTAGTAAAGGGATACTCACTTAAAAATAGAAGTAATCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTGCTATTTAGTAAAGGGATACTCACTTAAAAATAGAAGTAATCC  587

seq1  AGAACATAGTACTGGATGCTTATTGTGTATAATATCTTGGCTGGCACAGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATAGTACTGGATGCTTATTGTGTATAATATCTTGGCTGGCACAGT  637

seq1  GATCTACTTATTCCCTCCAACAATTCACTCAGGCAATGAAGGCAATTTAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTACTTATTCCCTCCAACAATTCACTCAGGCAATGAAGGCAATTTAA  687

seq1  AGTTTTTAAATCAACTTATTTTAATTACTTTGCTACAATTGTTTGCTTTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTAAATCAACTTATTTTAATTACTTTGCTACAATTGTTTGCTTTG  737

seq1  TATTATCCCTCTTTCTGGAAATACTTACATATATTAAATTCTTACATAAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATCCCTCTTTCTGGAAATACTTACATATATTAAATTCTTACATAAC  787

seq1  ATGTATTTCTCTTCTAATTAACAAAACATTCCTCCTAGTCATTTTGTTGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTTCTCTTCTAATTAACAAAACATTCCTCCTAGTCATTTTGTTGC  837

seq1  TTATTTGTCCTCTAGAAACCTACTAATTTTGGTATACCTTTAAGTGTTAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGTCCTCTAGAAACCTACTAATTTTGGTATACCTTTAAGTGTTAT  887

seq1  GTGTTTCTTTTGCATCTTATACCAAATATTACTCATTGTACATTTCAATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTCTTTTGCATCTTATACCAAATATTACTCATTGTACATTTCAATT  937

seq1  GACAATCCCACTATGCCTGTGATTACCCCTATAATTAAAATCTAAATTAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATCCCACTATGCCTGTGATTACCCCTATAATTAAAATCTAAATTAG  987

seq1  TCACTGTTGCTTGAGTTCCATAGATACACCGTCTGGACACTGGCTATACA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTTGCTTGAGTTCCATAGATACACCGTCTGGACACTGGCTATACA  1037

seq1  GGACATTGACACCAGTAATCACAGGTGGCTTAGGTTTTCTGTGTGAAATG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATTGACACCAGTAATCACAGGTGGCTTAGGTTTTCTGTGTGAAATG  1087

seq1  AGTCTCATACCCTTTATTATTTTGCTCAGTAAATATTTTCAGCGAAAACC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCATACCCTTTATTATTTTGCTCAGTAAATATTTTCAGCGAAAACC  1137

seq1  ATGAGATGCAGTCTGAATTC  1169
      ||||||||||||||||||||
seq2  ATGAGATGCAGTCTGAATTC  1157

seq1: chr2_165005622_165005673
seq2: B6Ng01-083I05.g_140_191 (reverse)

seq1  TTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCT  50

seq1  TC  52
      ||
seq2  TC  52