BAC Information

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BAC

Clone NameB6Ng01-083L14
Chromosome3 (Build37)1 (Build37)
Map Location 41,059,176 - 41,059,737149,829,326 - 149,830,545
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083L14.bB6Ng01-083L14.g
ACCDH897903DH897904
length9981,181
definitionDH897903|Mus musculus domesticus DNA, BAC clone: B6Ng01-083L14, 5' end.DH897904|Mus musculus domesticus DNA, BAC clone: B6Ng01-083L14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,176 - 41,059,737)(149,829,326 - 149,830,545)
sequence
gaattctttgtttagctctgagtcccatttttaatggggttatttgattt
tctggagtccaccttcttgagttctttatatatattgaatattagtcccc
tatctgatttaggataggtaaagatcctttctcaatctattgttggcctt
tttgtcttatttactgtgtcttttgccttacagaagctttgcaattttat
gaggtcccatttgtcaattctcaatcttacagtacaagccattgttgttc
tattcaggaatttctcccctgtgcccatatctttgaggctttccccattt
tctcccctataagtttcattgtctctggttttatgtggagttccgtgatc
cacttaatttgaccttagtacaaggagataggaatgggacaatttgcatt
cttctacatgttaaccgccagttgtgcaaacaccatttgttgaaaaggct
gtcttttttttccactggggatggttttagctcccttgtcaaagaccaag
tgaccataggtatgtggattcatttctgggtcttcaattctattccattg
gtgtacttgtctgtctttataccagtaccatgaagttttttgtcacaatt
gctttgtagtacagctttaggccaggcatggtgaatccatcagatgatct
tttatccttgagaaattttttgctatcctaggtttttttttactccagat
gaatttggagattgccctttttaattcgttgaagaattgagttgaaattt
tgaaggggattgcattgaatctttagattgcttttggcaagatagccatt
tttactatattgatcctgccaatccatgatcatggaagatctttccatct
tctgaggtcttctttaatttctttcttcagagacttgaagttcttatcat
acggatctttcacttccttagttagagtcacaccagggtattttatatta
tttgtgactatggagaaggttgttgtttctctaatttctttctcagcc
gaattccacatactgagatcctagtaaaccactctgtcccttttttttct
aaggagagaattatgtataattccaaattgtgtgaaaaatatccactatt
taatcaaagttatttctaatatataaagttatccagatactatgatcatt
actcaaaagatagtatatattcagtggattccttataaattccacatgtc
ttttcattttctttttccaatttcactaaaatttatcttcttctctaaat
tttcaaatgagaacatttctattttaaatcctaaacatatattttaaagg
gtttattcctaatttagcctcaatggcatgtatttgatagatacatatta
atattatttatatttgtttgtaggaacaaatcacacacacacacacacac
acacacacacacacaaacacacctctaaagatcgaagccccataactgcc
ttaaaaatatgatgttgtataaattttccatgagcacaacatcatagctc
cctttggacagtttctattaccatcacctaatttataatgcaacagttat
aaacttgcccccttagctctactatcttggagaggaatgagtgaaaattt
cataaccccaattcttacagagcttgttggtccttagaaaccaatcttaa
ggcttcagtaggggaaatgtttatcaccaagtaaaccacctcttcatcca
gcctgttaaagagatttgctgcaacttttattgaattcttgagggtttta
ttcctcaagctattactctgaaatatataagcaaggagaggccagagccc
ataagacttaatgtggctgcgcatgtaaatgtttactaaagctaagaatg
atgggctatgacagcacgatgctctctggtagcttatggttcttttctcc
tcagtgtcctctactagttcaaatagacttgagtgtcattttagatctta
tacagtagctatacttctgaggatttttattatagtcaagaaataatatc
attatattatctccactggaggctaataagctcccctatcattttattag
acttccatcaaggatttactgcttctatactttcagcaacttaactacat
caggaaatttaattgcaattatgtgtgctgctctgaattactagaattat
ctgaatatcacatcggactggaacaagtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059176_41059737
seq2: B6Ng01-083L14.b_43_606 (reverse)

seq1  GACAGACAAGCAGACCAATGGAATAGAATTGAAGACTCAGAAACGAATCC  50
      |||||||||| | ||||||||||||||||||||||| |||||| ||||||
seq2  GACAGACAAGTACACCAATGGAATAGAATTGAAGACCCAGAAATGAATCC  50

seq1  ACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCAT--CCA  98
      ||| ||||||||||||||| |||| ||||||||||||||||||||  |||
seq2  ACATACCTATGGTCACTTGGTCTTTGACAAGGGAGCTAAAACCATCCCCA  100

seq1  GTGG--AAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTT  146
      ||||  |||||||||||| |||||||||||||||| | ||||||||||  
seq2  GTGGAAAAAAAAGACAGCCTTTTCAACAAATGGTGTTTGCACAACTGGCG  150

seq1  GTTATCATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACTA  196
      |||| ||||||||||||||| |||||  ||| ||||||||||||||||||
seq2  GTTAACATGTAGAAGAATGCAAATTGTCCCATTCCTATCTCCTTGTACTA  200

seq1  AGGTCAAATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACACTG  246
      ||||||||| ||||||||||| ||||| ||||||||||||||||||| ||
seq2  AGGTCAAAT-TAAGTGGATCACGGAACTCCACATAAAACCAGAGACAATG  249

seq1  AAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGG  296
      |||||||||| ||||||| ||||| |||||||  ||||||||| ||||||
seq2  AAACTTATAGGGGAGAAAATGGGG-AAAGCCTCAAAGATATGGGCACAGG  298

seq1  GGAAAAATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAA  346
      ||| ||||||||| |||||||| ||||||||||| |||||||||||||||
seq2  GGAGAAATTCCTGAATAGAACAACAATGGCTTGTACTGTAAGATTGAGAA  348

seq1  TAGACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGAC  396
      | ||||||||||||||||| ||| ||||||||||||| ||||||||||||
seq2  TTGACAAATGGGACCTCATAAAATTGCAAAGCTTCTGTAAGGCAAAAGAC  398

seq1  ACCGTCAATAAGACAAAAAGG-CACCAACAGATTGGGAAAGGATCTTTAC  445
      || || ||||||||||||||| || ||| |||||| ||||||||||||||
seq2  ACAGTAAATAAGACAAAAAGGCCAACAATAGATTGAGAAAGGATCTTTAC  448

seq1  CTATCCTAAATCAGATAGGGGACTAATATCCAATATATATCAAGAACTCA  495
      ||||||||||||||||||||||||||||| |||||||||| |||||||||
seq2  CTATCCTAAATCAGATAGGGGACTAATATTCAATATATATAAAGAACTCA  498

seq1  AGAAGGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCA  545
      |||||||||| |||||||||||||||||||||||| ||||||||| ||||
seq2  AGAAGGTGGACTCCAGAAAATCAAATAACCCCATT-AAAAATGGGACTCA  547

seq1  GAGCTAAACAAAGAATT  562
      |||||||||||||||||
seq2  GAGCTAAACAAAGAATT  564

seq1: chr1_149829326_149830545
seq2: B6Ng01-083L14.g_67_1247 (reverse)

seq1  CACACTTGTGTTTCTCAGTTTCTGGGATGTGTGGATAATATTCAGATATA  50
      ||||||||   ||| |||    |  ||||||      |||||||||||  
seq2  CACACTTG---TTC-CAG----TCCGATGTG------ATATTCAGATAAT  36

seq1  TCTAGTAAAATACAAAGGAGCAGCAAACAATTAATTGCATATAAATTTTC  100
      ||||||  ||| ||   |||||||| |||  |||||||| || || ||||
seq2  TCTAGT--AATTCA---GAGCAGCACACA--TAATTGCA-ATTAAATTTC  78

seq1  TTGATGGTAGTTAGGTTGCTGAAAGTATAGAAGCAGGTATATCCTTTGAA  150
       |||| ||||||| ||||||||||||||||||||| ||| |||| |||| 
seq2  CTGAT-GTAGTTAAGTTGCTGAAAGTATAGAAGCA-GTAAATCC-TTGA-  124

seq1  TTGGAAAGTCTAAAATAAAATTGAATAGGTGAGCTTATTTAGCCTCCAGT  200
       ||| ||||||  ||||||||   ||||| ||||||| ||||||||||||
seq2  -TGG-AAGTCT--AATAAAAT--GATAGGGGAGCTTA-TTAGCCTCCAGT  167

seq1  GGAGATTATATTAATGATATTATATTCTTTGACTATAATAAAAATCCTCA  250
      |||||| ||| |||||||||||| ||| ||||||||||||||||||||||
seq2  GGAGATAATA-TAATGATATTAT-TTC-TTGACTATAATAAAAATCCTCA  214

seq1  GAAGTATTAGCTTACTTGTATAAGATCTAAAATGACACTCAAGTCTATTT  300
      |||||| |||| ||| ||||||||||||||||||||||||||||||||||
seq2  GAAGTA-TAGC-TAC-TGTATAAGATCTAAAATGACACTCAAGTCTATTT  261

seq1  GAACTAGTAGAGGACACTGAGGAGAAAAGAACCATAAGCTACCAGAGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAGTAGAGGACACTGAGGAGAAAAGAACCATAAGCTACCAGAGAGC  311

seq1  ATCGTGCTGTCATAGCCCATCATTCTTAGCTTTAGTAAACATTTACATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTGCTGTCATAGCCCATCATTCTTAGCTTTAGTAAACATTTACATGC  361

seq1  GCAGCCACATTAAGTCTTATGGGCTCTGGCCTCTCCTTGCTTATATATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCACATTAAGTCTTATGGGCTCTGGCCTCTCCTTGCTTATATATTT  411

seq1  CAGAGTAATAGCTTGAGGAATAAAACCCTCAAGAATTCAATAAAAGTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTAATAGCTTGAGGAATAAAACCCTCAAGAATTCAATAAAAGTTGC  461

seq1  AGCAAATCTCTTTAACAGGCTGGATGAAGAGGTGGTTTACTTGGTGATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATCTCTTTAACAGGCTGGATGAAGAGGTGGTTTACTTGGTGATAA  511

seq1  ACATTTCCCCTACTGAAGCCTTAAGATTGGTTTCTAAGGACCAACAAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCCCCTACTGAAGCCTTAAGATTGGTTTCTAAGGACCAACAAGCT  561

seq1  CTGTAAGAATTGGGGTTATGAAATTTTCACTCATTCCTCTCCAAGATAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAGAATTGGGGTTATGAAATTTTCACTCATTCCTCTCCAAGATAGT  611

seq1  AGAGCTAAGGGGGCAAGTTTATAACTGTTGCATTATAAATTAGGTGATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTAAGGGGGCAAGTTTATAACTGTTGCATTATAAATTAGGTGATGG  661

seq1  TAATAGAAACTGTCCAAAGGGAGCTATGATGTTGTGCTCATGGAAAATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGAAACTGTCCAAAGGGAGCTATGATGTTGTGCTCATGGAAAATTT  711

seq1  ATACAACATCATATTTTTAAGGCAGTTATGGGGCTTCGATCTTTAGAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAACATCATATTTTTAAGGCAGTTATGGGGCTTCGATCTTTAGAGGT  761

seq1  GTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATTTGTTCCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATTTGTTCCTA  811

seq1  CAAACAAATATAAATAATATTAATATGTATCTATCAAATACATGCCATTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAATATAAATAATATTAATATGTATCTATCAAATACATGCCATTG  861

seq1  AGGCTAAATTAGGAATAAACCCTTTAAAATATATGTTTAGGATTTAAAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAAATTAGGAATAAACCCTTTAAAATATATGTTTAGGATTTAAAAT  911

seq1  AGAAATGTTCTCATTTGAAAATTTAGAGAAGAAGATAAATTTTAGTGAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGTTCTCATTTGAAAATTTAGAGAAGAAGATAAATTTTAGTGAAA  961

seq1  TTGGAAAAAGAAAATGAAAAGACATGTGGAATTTATAAGGAATCCACTGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAAAAGAAAATGAAAAGACATGTGGAATTTATAAGGAATCCACTGA  1011

seq1  ATATATACTATCTTTTGAGTAATGATCATAGTATCTGGATAACTTTATAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATACTATCTTTTGAGTAATGATCATAGTATCTGGATAACTTTATAT  1061

seq1  ATTAGAAATAACTTTGATTAAATAGTGGATATTTTTCACACAATTTGGAA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAAATAACTTTGATTAAATAGTGGATATTTTTCACACAATTTGGAA  1111

seq1  TTATACATAATTCTCTCCTTAGAAAAAAAAGGGACAGAGTGGTTTACTAG  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACATAATTCTCTCCTTAGAAAAAAAAGGGACAGAGTGGTTTACTAG  1161

seq1  GATCTCAGTATGTGGAATTC  1220
      ||||||||||||||||||||
seq2  GATCTCAGTATGTGGAATTC  1181