BAC Information

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BAC

Clone NameB6Ng01-083N02
Chromosome3 (Build37)
Map Location 140,484,966 - 140,608,069
singlet/doubletdoublet
Overlap geneLOC621343
Upstream geneLOC229883
Downstream gene4930590L14Rik, Pdha2, Unc5c, LOC100039923, Bmpr1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083N02.bB6Ng01-083N02.g
ACCDH897973DH897974
length1,0681,055
definitionDH897973|Mus musculus domesticus DNA, BAC clone: B6Ng01-083N02, 5' end.DH897974|Mus musculus domesticus DNA, BAC clone: B6Ng01-083N02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,484,966 - 140,486,050)(140,607,024 - 140,608,069)
sequence
gaattcagtatctttatttatagcataagataatgactaggatataaatg
gtgatctgcttctaacatcagaatcaagtattgccaatagctaaaaaggc
tgctcattcaatcaagagtttatattgtcagtaattttttttttttaaag
ttagcatcggttattgtaaggggaaaataacattgaatacagaaagaata
ggctaccatactggacacagtacagacagctattgataaagccattgcta
gctttccatatttattctagaaacagtatgccaaaaatgtagttctcatg
taaacatctttactagatctatttttagggcatgttaccaacacgatttc
cattttctaacactgtgcaaattaaagtatgcttctttcgtttagctcca
aagttgtctacacttcttagttggtgataaaaattactgtagcttcctag
acatgagtgtagcacataggaaaggaagctgtatctggaagtgatgtttc
taactctttagatgtgtatcaatacagctcttggtgggcaatgaagtatc
ccctggttcccattctcaatggtcattgcactctctagttggtaaccttt
ctttcactatactctcattgttgcttcctgatcaacctactgttctgttt
atactctattgtgtgtgctcatccctcccatctaccatttaagtaataaa
cgaagtcagaatctcccaagagtcaattctaaattaggcatccttggaaa
ctatattaaaattttaactcaaaacataagcactagttttaggagttgtt
taattattatgcaaacactggggaaatttgactcaacacatcttgaataa
ttggtgccatatattaagtgttggctgagtacaagttgcaaaaacaaatt
acttggttgtcacacatcaagacagaattatgtttcctattagctgtgag
gtacagtgtcttatctaaataaggactatctcttcagtcagtagacaagt
atgtgaagacgaggactaaataacaggagtttgcatcaaatgtgcagtgt
ttatagtatctgaattga
gaattccaacacagcaaaactgaataattccaaccagatacaggagttct
tttcttatgaaagaacttttgagggaatgtgaaggtagatttgccaagga
aacttcattctttaactagaatccctctgcaggtccagcgagcatcagtt
acagactacttgcgctccatctgctctatgtaaggtagatgaagggttgt
taggatttagtagaccccatgatttcaatgacagatggtaaagtgtcaat
caggaatcaaaaaagtggcaaatcaaagtcactgaggatctattagtgtt
tctgagacatgcctcaatatttagggccagtaaagagactgattatactc
cttagacagacctttgaaattaataccaaaaccaagctaagtaaaagaaa
ctaaactaaaatgttagaaggatttattcaccttaaacaagtttcagtgc
agagagctgtcaatggaaaaggattatctgctaaaaaaatagaggaataa
gccaggttttcaaagaacaaaagggggtgggggtagtttggaagagtcac
aataaagaatgtgctaagccttcaggaagttcaaaggcttatcagcatca
ccaataactgtattatcataataaggatgaaaataataatcatgtaatac
attgttgactctgtgagtaaaaggaaaggggcagatgtttacaatactgc
tttaaaataaaatactgtcttatttgtgcattaatgttaaattcaataag
gggaatactgagtgtgttcaaacttcctcactgactactttatgaaattg
aacatagccaagtttgccttcagtaagctgatagttacgtgtgaatcttg
ccagcttaattttagaattatgctgtatgaactatgacctttgactgaga
gatcacacatttgcacttttttcttctcacttcttgggatgggaagaggc
tcctgggtgaacctctgatatgctcatgctgcccacttcacatcttttct
tcttttgcagtgaatgtatctcaattgtgaggaaaaaatcttctgtgtgt
tatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_140484966_140486050
seq2: B6Ng01-083N02.b_44_1111

seq1  GAATTCAGTATCTTTATTTATAGCATAAGATAATGACTAGGATATAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTATCTTTATTTATAGCATAAGATAATGACTAGGATATAAATG  50

seq1  GTGATCTGCTTCTAACATCAGAATCAAGTATTGCCAATAGCTAAAAAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCTGCTTCTAACATCAGAATCAAGTATTGCCAATAGCTAAAAAGGC  100

seq1  TGCTCATTCAATCAAGAGTTTATATTGTCAGTAATTTTTTTTTTTTAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATTCAATCAAGAGTTTATATTGTCAGTAATTTTTTTTTTTTAAAG  150

seq1  TTAGCATCGGTTATTGTAAGGGGAAAATAACATTGAATACAGAAAGAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATCGGTTATTGTAAGGGGAAAATAACATTGAATACAGAAAGAATA  200

seq1  GGCTACCATACTGGACACAGTACAGACAGCTATTGATAAAGCCATTGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACCATACTGGACACAGTACAGACAGCTATTGATAAAGCCATTGCTA  250

seq1  GCTTTCCATATTTATTCTAGAAACAGTATGCCAAAAATGTAGTTCTCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCCATATTTATTCTAGAAACAGTATGCCAAAAATGTAGTTCTCATG  300

seq1  TAAACATCTTTACTAGATCTATTTTTAGGGCATGTTACCAACACGATTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATCTTTACTAGATCTATTTTTAGGGCATGTTACCAACACGATTTC  350

seq1  CATTTTCTAACACTGTGCAAATTAAAGTATGCTTCTTTCGTTTAGCTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTAACACTGTGCAAATTAAAGTATGCTTCTTTCGTTTAGCTCCA  400

seq1  AAGTTGTCTACACTTCTTAGTTGGTGATAAAAATTACTGTAGCTTCCTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTCTACACTTCTTAGTTGGTGATAAAAATTACTGTAGCTTCCTAG  450

seq1  ACATGAGTGTAGCACATAGGAAAGGAAGCTGTATCTGGAAGTGATGTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAGTGTAGCACATAGGAAAGGAAGCTGTATCTGGAAGTGATGTTTC  500

seq1  TAACTCTTTAGATGTGTATCAATACAGCTCTTGGTGGGCAATGAAGTATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCTTTAGATGTGTATCAATACAGCTCTTGGTGGGCAATGAAGTATC  550

seq1  CCCTGGTTCCCATTCTCAATGGTCATTGCACTCTCTAGTTGGTAACCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGTTCCCATTCTCAATGGTCATTGCACTCTCTAGTTGGTAACCTTT  600

seq1  CTTTCACTATACTCTCATTGTTGCTTCCTGATCAACCTACTGTTCTGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCACTATACTCTCATTGTTGCTTCCTGATCAACCTACTGTTCTGTTT  650

seq1  ATACTCTATTGTGTGTGCTCATCCCTCCCATCTACCATTTAAGTAATAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCTATTGTGTGTGCTCATCCCTCCCATCTACCATTTAAGTAATAAA  700

seq1  CGAAGTCAGAATCTCCCAAGAGTCAATTCTAAATTAGGCATCCTTGGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGTCAGAATCTCCCAAGAGTCAATTCTAAATTAGGCATCCTTGGAAA  750

seq1  CTATATTAAAATTTTAACTCAAAACATAAGCACTAGTTTTAGGAGTTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATTAAAATTTTAACTCAAAACATAAGCACTAGTTTTAGGAGTTGTT  800

seq1  TAATTATTATGCAAACACTGGGGAAATTTGACTCAACACATCTTGAATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATTATGCAAACACTGGGGAAATTTGACTCAACACATCTTGAATAA  850

seq1  TTGGTGCCATATATTAAGTGTTGGCTGAGTACAAGTTGCAAAAACAAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGCCATATATTAAGTGTTGGCTGAGTACAAGTTGCAAAAACAAATT  900

seq1  ACTTGGTTGTCACACATCAAGACAGAATTATGTTTCCTATTAGCTGTGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGTTGTCACACATCAAGACAGAATTATGTTTCCTATTAGCTGTGAG  950

seq1  GTACAAGTTGTCCTTATTCTAAATAAAGGAACTATCTCTTCAGTCAAGGT  1000
      |||||   ||| |||| |||||||||  | ||||||||||||||||  ||
seq2  GTACA--GTGT-CTTA-TCTAAATAA--GGACTATCTCTTCAGTCA--GT  992

seq1  AGACAAAGTATGTGAAGACAGAGGACTAAATTAAACAGGAGTTTGCATCA  1050
      |||| |||||||||||||| |||||||||||  |||||||||||||||||
seq2  AGAC-AAGTATGTGAAGAC-GAGGACTAAAT--AACAGGAGTTTGCATCA  1038

seq1  AATGTGGCAGGTGTTTATTAGGTATCTGATATTGA  1085
      ||||| ||| ||||||||   |||||||| |||||
seq2  AATGT-GCA-GTGTTTAT--AGTATCTGA-ATTGA  1068

seq1: chr3_140607024_140608069
seq2: B6Ng01-083N02.g_66_1120 (reverse)

seq1  CCATAACACAGAGA----TATTTCCTCACAA-TGAGATACATTCACTTGC  45
      |||||||||| |||    | ||||||||||| |||||||||||||| |||
seq2  CCATAACACACAGAAGATTTTTTCCTCACAATTGAGATACATTCAC-TGC  49

seq1  AAAAGA--GAAAGATGTG-AGTGGGCAGCATGAGCATATCAGAGGTTCTA  92
      ||||||   ||||||||| ||||||||||||||||||||||||||||| |
seq2  AAAAGAAGAAAAGATGTGAAGTGGGCAGCATGAGCATATCAGAGGTTC-A  98

seq1  CCCAGGAGCCTCTTCCCATCCCAAGAAGTGAG-AGGAAAAAGTGCAAATG  141
      |||||||||||||||||||||||||||||||| || ||||||||||||||
seq2  CCCAGGAGCCTCTTCCCATCCCAAGAAGTGAGAAGAAAAAAGTGCAAATG  148

seq1  TGTGATCTCTCAGTCAAAGGTCATAGTTCATACAGCATAATTCTAAAATT  191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATCTCTCAGTCAAAGGTCATAGTTCATACAGCATAATTCTAAAATT  198

seq1  AAGCTGGC-AGGTTCACACGTAACTATCAGCTTACTGAAGGCAAACTTGG  240
      |||||||| || ||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGCAAGATTCACACGTAACTATCAGCTTACTGAAGGCAAACTTGG  248

seq1  CTATGTTCAATTTCAT-AAGTAGTCAGTGAGGAAGTTTGAACACACTCAG  289
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTATGTTCAATTTCATAAAGTAGTCAGTGAGGAAGTTTGAACACACTCAG  298

seq1  TATTCCCCTTATTGAATTTAACATTAATGCACAAATAAGACAGTATTTTA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCCCTTATTGAATTTAACATTAATGCACAAATAAGACAGTATTTTA  348

seq1  TTTTAAAGCAGTATTGTAAACATCTGCCCCTTTCCTTTTACTCACAGAGT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAGCAGTATTGTAAACATCTGCCCCTTTCCTTTTACTCACAGAGT  398

seq1  CAACAATGTATTACATGATTATTATTTTCATCCTTATTATGATAATACAG  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAATGTATTACATGATTATTATTTTCATCCTTATTATGATAATACAG  448

seq1  TTATTGGTGATGCTGATAAGCCTTTGAACTTCCTGAAGGCTTAGCACATT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGGTGATGCTGATAAGCCTTTGAACTTCCTGAAGGCTTAGCACATT  498

seq1  CTTTATTGTGACTCTTCCAAACTACCCCCACCCCCTTTTGTTCTTTGAAA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTGTGACTCTTCCAAACTACCCCCACCCCCTTTTGTTCTTTGAAA  548

seq1  ACCTGGCTTATTCCTCTATTTTTTTAGCAGATAATCCTTTTCCATTGACA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGCTTATTCCTCTATTTTTTTAGCAGATAATCCTTTTCCATTGACA  598

seq1  GCTCTCTGCACTGAAACTTGTTTAAGGTGAATAAATCCTTCTAACATTTT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTGCACTGAAACTTGTTTAAGGTGAATAAATCCTTCTAACATTTT  648

seq1  AGTTTAGTTTCTTTTACTTAGCTTGGTTTTGGTATTAATTTCAAAGGTCT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAGTTTCTTTTACTTAGCTTGGTTTTGGTATTAATTTCAAAGGTCT  698

seq1  GTCTAAGGAGTATAATCAGTCTCTTTACTGGCCCTAAATATTGAGGCATG  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAAGGAGTATAATCAGTCTCTTTACTGGCCCTAAATATTGAGGCATG  748

seq1  TCTCAGAAACACTAATAGATCCTCAGTGACTTTGATTTGCCACTTTTTTG  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGAAACACTAATAGATCCTCAGTGACTTTGATTTGCCACTTTTTTG  798

seq1  ATTCCTGATTGACACTTTACCATCTGTCATTGAAATCATGGGGTCTACTA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGATTGACACTTTACCATCTGTCATTGAAATCATGGGGTCTACTA  848

seq1  AATCCTAACAACCCTTCATCTACCTTACATAGAGCAGATGGAGCGCAAGT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTAACAACCCTTCATCTACCTTACATAGAGCAGATGGAGCGCAAGT  898

seq1  AGTCTGTAACTGATGCTCGCTGGACCTGCAGAGGGATTCTAGTTAAAGAA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTAACTGATGCTCGCTGGACCTGCAGAGGGATTCTAGTTAAAGAA  948

seq1  TGAAGTTTCCTTGGCAAATCTACCTTCACATTCCCTCAAAAGTTCTTTCA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTTTCCTTGGCAAATCTACCTTCACATTCCCTCAAAAGTTCTTTCA  998

seq1  TAAGAAAAGAACTCCTGTATCTGGTTGGAATTATTCAGTTTTGCTGTGTT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAAGAACTCCTGTATCTGGTTGGAATTATTCAGTTTTGCTGTGTT  1048

seq1  GGAATTC  1046
      |||||||
seq2  GGAATTC  1055