BAC Information

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BAC

Clone NameB6Ng01-083O10
Chromosome3 (Build37)
Map Location 118,732,880 - 118,842,236
singlet/doubletdoublet
Overlap geneDpyd
Upstream genenone
Downstream geneLOC100043275, LOC100043278, Ptbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083O10.bB6Ng01-083O10.g
ACCDH898029DH898030
length1,1731,119
definitionDH898029|Mus musculus domesticus DNA, BAC clone: B6Ng01-083O10, 5' end.DH898030|Mus musculus domesticus DNA, BAC clone: B6Ng01-083O10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,732,880 - 118,734,074)(118,841,105 - 118,842,236)
sequence
gaattcactttatttttgaaaactacaatggtcaatactactcaaatact
tatgtactactattagagcatagattattttactgagtattaactcttga
tatttttatatcaagatatattgatattctatattttagaatactcactt
gcaaaggaaaaactattttctttaatataataatggacattgtaactaca
cttcagagtgagctccaagtctagcagttgatgagtaaaacaaaatgaac
tcaatgttgtttttgtagattttttgtctcctatggcttttaagcagcat
tttctattttattagtgtttttcatgtgtattatggtttctaatttagtg
tttttgtaggctttgcatatatgttatattgtgaaggtttttttttttgt
tgtctgttttaagttttgctttgtttggtattggtttttgcctgtttgtt
ttctaacgagagaaagaaaggatggctttggattggcagggatgagggga
ggagctggaggagctgggaaggaaagatatcagaatgtatcatatgaaac
atagtttttaattaaaaatgttttgtatgtttttatgttgtttcattaat
gttatagttaaggaaatagaaacccagagaattaaataacctatagaggg
tcatatatgtaatttcaaaggtacttcctatctctctctctctttagcct
tgagaaaaatgactctttaaagttggcatcaagccagggataggtggcat
ataaccatgatggaagcatttggcaggctgaagctggaggattgcaattt
aaagtcatctgggtagacataacaacaccctgtctcaagaacaatgacag
tgcatactgacaccgtcatcaaaatcagtggtaaaagaaaatcaaagccc
aaaagacaatgagtccttttcatcctgtggtttctgtctatagtatgcta
tgagttttggctctttcatacatattttgatttttcatccattagatctt
aaaacttttttcaagtgatgtctcaggaatagcaaaactatttcacagaa
ttttacaacatgatgcatataatatattagcattcacctggtaatccatg
atatcctaggagagattacattataccttcctaggccattgctaagatcc
ctctaccctaaaaggatgtgaat
gaattcccttatctgtcgagtactatgaaagcagaatatgcatcaatcaa
aagccatttagaacaccccctagtgatagtgagtgtcaccaacgaggaag
tcatcgagagcatgtcttgtgcatcaaagagtttgtagtgacagagtctg
agctccaacttctctccatagtctagtgctttcctgtccactgattctgt
ttccgtttatatctcagtgtgtgcaaacacagcttgccagtcacggatgt
gaggctatctggcagacacttggcatcacaaacagaaagaagacacttgc
tccccaactgggactgccacactggattaagacaaaataacttttcatca
ttcttgtggcttctaaacagttgttcaaaacaaaattcttcaccatctat
ggattagagtcttaactagggatagggtttgtttttgttttttgtttgtt
tgtttttgtttgtttgttttttgagacagggtttctctgtatagtcctgg
ctgtcctggaactctgtagaccaggctggcttcgaattcagaaattcccc
tgcctttgcctcccaagtgctgggattaaagatgtgcgccaccacaccca
gctagggatagttatttaaatctatcaaatagtacacacctgcatgtact
gatcaccaaaatgatctgtgatgggttttggaatgagtatccaggcctta
aaaattgggacaagactgctctgggtgacacccaggacctgggagacatt
tattttgctttctgaatatgcctgctacagggctcacaggaacttcaggg
tggctaacttctatttccaagtaaccacaaccactcaaaaagccttagtt
gctgaattagtatgaaatgctaaataaactaaactgaactaacattctgg
ctcttattagtaacaaggattttagttgcttagtccagaaggcatctacc
tcaccaaataagagcatgaaaaaggaaaagaaaggtagaagcagcacagg
gatgttcattgctcaagagtagctaaacttcagattagaatttgttgaac
tgttttctcttagatttaagcctgtttcaccaggaggaagcatgctgctg
cagaaatctagcctaaacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_118732880_118734074
seq2: B6Ng01-083O10.b_48_1220

seq1  GAATTCACTTTATTTTTGAAAACTACAATGGTCAATACTACTCAAATACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTATTTTTGAAAACTACAATGGTCAATACTACTCAAATACT  50

seq1  TATGTACTACTATTAGAGCATAGATTATTTTACTGAGTATTAACTCTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTACTACTATTAGAGCATAGATTATTTTACTGAGTATTAACTCTTGA  100

seq1  TATTTTTATATCAAGATATATTGATATTCTATATTTTAGAATACTCACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTATATCAAGATATATTGATATTCTATATTTTAGAATACTCACTT  150

seq1  GCAAAGGAAAAACTATTTTCTTTAATATAATAATGGACATTGTAACTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGGAAAAACTATTTTCTTTAATATAATAATGGACATTGTAACTACA  200

seq1  CTTCAGAGTGAGCTCCAAGTCTAGCAGTTGATGAGTAAAACAAAATGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGAGTGAGCTCCAAGTCTAGCAGTTGATGAGTAAAACAAAATGAAC  250

seq1  TCAATGTTGTTTTTGTAGATTTTTTGTCTCCTATGGCTTTTAAGCAGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGTTGTTTTTGTAGATTTTTTGTCTCCTATGGCTTTTAAGCAGCAT  300

seq1  TTTCTATTTTATTAGTGTTTTTCATGTGTATTATGGTTTCTAATTTAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATTTTATTAGTGTTTTTCATGTGTATTATGGTTTCTAATTTAGTG  350

seq1  TTTTTGTAGGCTTTGCATATATGTTATATTGTGAAGGTTTTTTTTTTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTAGGCTTTGCATATATGTTATATTGTGAAGGTTTTTTTTTTTGT  400

seq1  TGTCTGTTTTAAGTTTTGCTTTGTTTGGTATTGGTTTTTGCCTGTTTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTTTTAAGTTTTGCTTTGTTTGGTATTGGTTTTTGCCTGTTTGTT  450

seq1  TTCTAACGAGAGAAAGAAAGGATGGCTTTGGATTGGCAGGGATGAGGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACGAGAGAAAGAAAGGATGGCTTTGGATTGGCAGGGATGAGGGGA  500

seq1  GGAGCTGGAGGAGCTGGGAAGGAAAGATATCAGAATGTATCATATGAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGGAGGAGCTGGGAAGGAAAGATATCAGAATGTATCATATGAAAC  550

seq1  ATAGTTTTTAATTAAAAATGTTTTGTATGTTTTTATGTTGTTTCATTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTTTAATTAAAAATGTTTTGTATGTTTTTATGTTGTTTCATTAAT  600

seq1  GTTATAGTTAAGGAAATAGAAACCCAGAGAATTAAATAACCTATAGAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAGTTAAGGAAATAGAAACCCAGAGAATTAAATAACCTATAGAGGG  650

seq1  TCATATATGTAATTTCAAAGGTACTTCCTATCTCTCTCTCTCTTTAGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATATGTAATTTCAAAGGTACTTCCTATCTCTCTCTCTCTTTAGCCT  700

seq1  TGAGAAAAATGACTCTTTAAAGTTGGCATCAAGCCAGGGATAGGTGGCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAAATGACTCTTTAAAGTTGGCATCAAGCCAGGGATAGGTGGCAT  750

seq1  ATAACCATGATGGAAGCATTTGGCAGGCTGAAGCTGGAGGATTGCAATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCATGATGGAAGCATTTGGCAGGCTGAAGCTGGAGGATTGCAATTT  800

seq1  AAAGTCATCTGGGTAGACATAACAACACCCTGTCTCAAGAACAATGACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCATCTGGGTAGACATAACAACACCCTGTCTCAAGAACAATGACAG  850

seq1  TGCATACTGACACCGTCATCAAAATCAGTGGTAAAAGAAAATCAAAGCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATACTGACACCGTCATCAAAATCAGTGGTAAAAGAAAATCAAAGCCC  900

seq1  AAAAGACAATGAGTCCTTTTCATCCTGTGGTTTCTGTCTATAGTATGCTT  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAAAGACAATGAGTCCTTTTCATCCTGTGGTTTCTGTCTATAGTATGC-T  949

seq1  ATGAGTTTTTGGCTCCTTTCATACATATTTTGATTTTTCCATCCATTAGA  1000
      ||||| |||||||| ||||||||||||||||||||||| |||||||||||
seq2  ATGAG-TTTTGGCT-CTTTCATACATATTTTGATTTTT-CATCCATTAGA  996

seq1  TCTTAAAACTCTTTTCATAGGTTGATGTCTCAGGAACTAAGCAAAAACTA  1050
      |||||||||| |||||| ||  ||||||||||||||   ||| |||||||
seq2  TCTTAAAACTTTTTTCA-AG--TGATGTCTCAGGAA--TAGC-AAAACTA  1040

seq1  ATTCACAGAATTTTTACAACAATGTATGGCATATAAATTATTATTAGCAT  1100
       ||||||||| ||||||||| ||| || ||||||||  || |||||||||
seq2  TTTCACAGAA-TTTTACAAC-ATG-AT-GCATATAA--TA-TATTAGCAT  1083

seq1  ACAACTGGTTATCCATGATAT-CTAGGAAAGAAGATATAAAATATATACT  1149
       || ||||| ||||||||||| |||||| |||  | ||      ||||| 
seq2  TCACCTGGTAATCCATGATATCCTAGGAGAGATTACAT------TATACC  1127

seq1  TTCTAAAGCCATTGCTAAGATTCATCTACCATAAAGAGTTGTGAAT  1195
      |||  | |||||||||||||| | |||||| ||||  | |||||||
seq2  TTCCTAGGCCATTGCTAAGATCCCTCTACCCTAAAAGGATGTGAAT  1173

seq1: chr3_118841105_118842236
seq2: B6Ng01-083O10.g_68_1186 (reverse)

seq1  GGTTTAGGGCTAGGTTTTCTGCAGCAGGCATGCATTTCCTCCT-GTGGAA  49
      |||||| ||||| | ||||||||||| ||||||  |||||||| ||| ||
seq2  GGTTTA-GGCTA-GATTTCTGCAGCA-GCATGC--TTCCTCCTGGTGAAA  45

seq1  CAGGCCTTAAATCTTAGAGGAAAACAGTTCCAACAAATTTCTAATCTGGA  99
      |||| ||||||||| ||| |||||||||| ||||||| |||||||||| |
seq2  CAGG-CTTAAATCTAAGA-GAAAACAGTT-CAACAAA-TTCTAATCTGAA  91

seq1  GTTTAGCTACTCCTTGGGCAATGAACATCCCTGTGCCTGCTTCTACCTTT  149
      ||||||||||| |||| |||||||||||||||||| ||||||||||| ||
seq2  GTTTAGCTACT-CTTGAGCAATGAACATCCCTGTG-CTGCTTCTACC-TT  138

seq1  TCTTTTCCTTTTTCATTGCTCTTATTTGGTGAGGTAGATGCCTTCTGGAC  199
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCTTTTCCTTTTTCA-TGCTCTTATTTGGTGAGGTAGATGCCTTCTGGAC  187

seq1  TAAGCAACTAAAATCCTTGTTACTAATAAGAGCCAGAATGTTAGTTCAGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAACTAAAATCCTTGTTACTAATAAGAGCCAGAATGTTAGTTCAGT  237

seq1  TTAGTTTATTTAGCATTTCATACTAATTCAGCAACTAAGGCTTTTTTGAG  299
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTAGTTTATTTAGCATTTCATACTAATTCAGCAACTAAGGC-TTTTTGAG  286

seq1  TGGTTGTGGTTACTTGGAAATAGAAGTTAGCCACCCCTGAAGTTCCTGTG  349
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGGTTGTGGTTACTTGGAAATAGAAGTTAGCCA-CCCTGAAGTTCCTGTG  335

seq1  AGCCCTGTAGCAGGCATATTCAG-AAGCAAAATAAATGTCTCCCAGGTCC  398
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGCCCTGTAGCAGGCATATTCAGAAAGCAAAATAAATGTCTCCCAGGTCC  385

seq1  TGGGTGTCACCCAGAGCAGTCTTGTCCCAATTTTTAAGGCCTGGATACTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTCACCCAGAGCAGTCTTGTCCCAATTTTTAAGGCCTGGATACTC  435

seq1  ATTCCAAAACCCATCACAGATCATTTTGGTGATCAGTACATGCAGGTGTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAAAACCCATCACAGATCATTTTGGTGATCAGTACATGCAGGTGTG  485

seq1  TACTATTTGATAGATTTAAATAACTATCCCTAGCTGGGTGTGGTGGCGCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTTGATAGATTTAAATAACTATCCCTAGCTGGGTGTGGTGGCGCA  535

seq1  CATCTTTAATCCCAGCACTTGGGAGGCAAAGGCAGGGGAATTTCTGAATT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTAATCCCAGCACTTGGGAGGCAAAGGCAGGGGAATTTCTGAATT  585

seq1  CGAAGCCAGCCTGGTCTACAGAGTTCCAGGACAGCCAGGACTATACAGAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGCCAGCCTGGTCTACAGAGTTCCAGGACAGCCAGGACTATACAGAG  635

seq1  AAACCCTGTCTCAAAAAACAAACAAACAAAAACAAACAAACAAAAAACAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTGTCTCAAAAAACAAACAAACAAAAACAAACAAACAAAAAACAA  685

seq1  AAACAAACCCTATCCCTAGTTAAGACTCTAATCCATAGATGGTGAAGAAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACCCTATCCCTAGTTAAGACTCTAATCCATAGATGGTGAAGAAT  735

seq1  TTTGTTTTGAACAACTGTTTAGAAGCCACAAGAATGATGAAAAGTTATTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGAACAACTGTTTAGAAGCCACAAGAATGATGAAAAGTTATTT  785

seq1  TGTCTTAATCCAGTGTGGCAGTCCCAGTTGGGGAGCAAGTGTCTTCTTTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTAATCCAGTGTGGCAGTCCCAGTTGGGGAGCAAGTGTCTTCTTTC  835

seq1  TGTTTGTGATGCCAAGTGTCTGCCAGATAGCCTCACATCCGTGACTGGCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTGATGCCAAGTGTCTGCCAGATAGCCTCACATCCGTGACTGGCA  885

seq1  AGCTGTGTTTGCACACACTGAGATATAAACGGAAACAGAATCAGTGGACA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGTTTGCACACACTGAGATATAAACGGAAACAGAATCAGTGGACA  935

seq1  GGAAAGCACTAGACTATGGAGAGAAGTTGGAGCTCAGACTCTGTCACTAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGCACTAGACTATGGAGAGAAGTTGGAGCTCAGACTCTGTCACTAC  985

seq1  AAACTCTTTGATGCACAAGACATGCTCTCGATGACTTCCTCGTTGGTGAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTTTGATGCACAAGACATGCTCTCGATGACTTCCTCGTTGGTGAC  1035

seq1  ACTCACTATCACTAGGGGGTGTTCTAAATGGCTTTTGATTGATGCATATT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTATCACTAGGGGGTGTTCTAAATGGCTTTTGATTGATGCATATT  1085

seq1  CTGCTTTCATAGTACTCGACAGATAAGGGAATTC  1132
      ||||||||||||||||||||||||||||||||||
seq2  CTGCTTTCATAGTACTCGACAGATAAGGGAATTC  1119