BAC Information

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BAC

Clone NameB6Ng01-084B20
Chromosome3 (Build37)
Map Location 18,830,093 - 18,831,258
singlet/doubletsinglet
Overlap genenone
Upstream geneCypt12, LOC545508, Bhlhb5, Cyp7b1, LOC622921, LOC100040153
Downstream geneArmc1, Mtfr1, Pde7a, Dnajc5b, EG620290, Trim55, Crh, LOC665002, LOC100039304, LOC100040237, 4632415L05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084B20.b
ACCDH898178
length1,156
definitionDH898178|Mus musculus domesticus DNA, BAC clone: B6Ng01-084B20, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgtcgagctcttctctctctgaatggaaaagacctgactttgaa
gcctggtgacttgggtgtaaaccttgtctccctcgtttctccatgtgtgg
agcctggctactctttgacccttctcatggcatgctctttggtcagatgg
agtgaaaaatactcgttgcttattcttgatgaaacttaaacatttgatgg
ccacagttcttagcatgttccctaagctcaccgaatatgagttgaatgct
aacctgctagccaaaaaactgcgggttgaagagagctgtgaatagcaatc
atttatctgagaattctctcactttaaaaaaaactccctcatttgcataa
gggcgactaacatacagaaaagttattttattttggctgctgacatgatt
cagttgaagaaagtttgtctagcattcataaagttgtaggtgccatcccc
ccaactgccacacacacacgaagttgtatgtgtgttcgtttgtgtatttt
agttatgtaactgaacccaggggtttgcaccaatctaccatgtgatctat
atcccagaccttgactatatggaccctgggggggttatgtcccggtcgct
tgaacttgaactaatgagcccttcttcacctataccccaagtgctggggt
ttgtaatgcatgactaagaactttatgcgtttaaatacttcgaagagggc
tcttgctatatactttaaatttttttttcctcagcattaaattagatctt
ttgcaactggttctcacggctatatatccacaaatgcacctgtgaattcg
cacaagaaatagatatttagccattgaaactgctatgatctatgtttaca
ctgccccaaaatttaaacactaagagatgatgctaggaggtggtgccttt
ggaaagtaactgggccacaagggtggagtccttaccatcatgagtgggaa
tactgcccatatcaaaaaatctggaggaaggccctcatgtgtcctaccat
atgaggtcagggttaggaaatacttattgagatcagacatcaccccccca
ctattcttgctaacatctctaccatgagcttgtcagcctcttaaagtggg
aagattatttctgtttacaaattactaggtctattaaatttcataaatcc
aggcag
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_18830093_18831258
seq2: B6Ng01-084B20.b_42_1197

seq1  GAATTCTGTCAAAGCTCTTCTCTCTCTGAAGGGAAAAGACCTGACTTTGA  50
      ||||||||||  |||||||||||||||||| |||||||||||||||||||
seq2  GAATTCTGTC-GAGCTCTTCTCTCTCTGAATGGAAAAGACCTGACTTTGA  49

seq1  ATCAAGGTGACTTGGGTTTAAACCTTGTCTCCATCATTTCTCACTGTGTG  100
      | |  |||||||||||| |||||||||||||| || ||||||  ||||||
seq2  AGCCTGGTGACTTGGGTGTAAACCTTGTCTCCCTCGTTTCTCCATGTGTG  99

seq1  GAGCCTGGCAACTCAATGACCCAGCTCATGGCATGCTCATTGGTCAGATG  150
      ||||||||| ||||  ||||||  |||||||||||||| |||||||||||
seq2  GAGCCTGGCTACTCTTTGACCCTTCTCATGGCATGCTCTTTGGTCAGATG  149

seq1  GAGTGAAAAATACTCATTGCATATTCTTGATGAAACAGAAACATTTGATG  200
      ||||||||||||||| |||| |||||||||||||||  ||||||||||||
seq2  GAGTGAAAAATACTCGTTGCTTATTCTTGATGAAACTTAAACATTTGATG  199

seq1  GCGACAGTTCTTAGCATGTTCCCTAAGCTCAATGAATATGAGTTGAATGC  250
      || ||||||||||||||||||||||||||||  |||||||||||||||||
seq2  GCCACAGTTCTTAGCATGTTCCCTAAGCTCACCGAATATGAGTTGAATGC  249

seq1  TAACCTGCTAGTCAAAAAACTGCAGTTTGAAGAGTAGCTGTGAATAGCAA  300
      ||||||||||| ||||||||||| | |||||||| |||||||||||||||
seq2  TAACCTGCTAGCCAAAAAACTGCGGGTTGAAGAG-AGCTGTGAATAGCAA  298

seq1  TCATTTATCTCAAAATTCTCTCACAAGAAAAAAAAGTCTCTCATTTGCAT  350
      |||||||||| | |||||||||||   |||||||| || |||||||||||
seq2  TCATTTATCTGAGAATTCTCTCACTTTAAAAAAAACTCCCTCATTTGCAT  348

seq1  AAAGGCAAATAACAGAGAGAAAAGTTATTTTATTTTGGCTGCAGACATGA  400
      || ||| | ||||| | ||||||||||||||||||||||||| |||||||
seq2  AAGGGCGACTAACATACAGAAAAGTTATTTTATTTTGGCTGCTGACATGA  398

seq1  TTCAGTTGAAGAAAGTTTGTCTAGCATTCATAAAGTTGTAGGTGCCATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTGAAGAAAGTTTGTCTAGCATTCATAAAGTTGTAGGTGCCATCC  448

seq1  CCCAAACTGCCACACACACACAAAGTTGTATGTGTGTTCTTTTGTGTATT  500
      ||| ||||||||||||||||| ||||||||||||||||| ||||||||||
seq2  CCCCAACTGCCACACACACACGAAGTTGTATGTGTGTTCGTTTGTGTATT  498

seq1  TTTGTTATGTAACTGAACCCAGGGGTTTGCACCAATCTACCAT-TCAGCT  549
      || |||||||||||||||||||||||||||||||||||||||| | | ||
seq2  TTAGTTATGTAACTGAACCCAGGGGTTTGCACCAATCTACCATGTGATCT  548

seq1  ATATCCCAGACCTTGACTATATAAGCCAGGGTCTGGTTATGTACC-TTAG  598
      ||||||||||||||||||||||   ||  ||   |||||||| ||  | |
seq2  ATATCCCAGACCTTGACTATATGGACCCTGGGGGGGTTATGTCCCGGTCG  598

seq1  GCTGAACTTGAACTAATGAGCCCTTCTTCACCTATACCCCAAGTGCTGGG  648
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACTTGAACTAATGAGCCCTTCTTCACCTATACCCCAAGTGCTGGG  648

seq1  GTTACAAATGCATGACTAAGAAGTTTATACTTTTAAATACTTAGAACAAG  698
      |||   |||||||||||||||| ||||| | ||||||||||| ||| | |
seq2  GTTTGTAATGCATGACTAAGAACTTTATGCGTTTAAATACTTCGAAGAGG  698

seq1  GCTCTTGCTATATACTTTAAAATTTTTTTTCCTCAACATTAAATTAGATC  748
      ||||||||||||||||||||| ||||||||||||| ||||||||||||||
seq2  GCTCTTGCTATATACTTTAAATTTTTTTTTCCTCAGCATTAAATTAGATC  748

seq1  TTTTGCAACTGGTTCTCAAGGCAATATATTCACAAATGCACATAAATAAT  798
      |||||||||||||||||| ||| |||||| ||||||||||| |    |||
seq2  TTTTGCAACTGGTTCTCACGGCTATATATCCACAAATGCACCT-GTGAAT  797

seq1  TCCCACAGGAAATAGATA-TTAGCCATTGAAACTGCTATGATCTATGTTT  847
      || |||| |||||||||| |||||||||||||||||||||||||||||||
seq2  TCGCACAAGAAATAGATATTTAGCCATTGAAACTGCTATGATCTATGTTT  847

seq1  ACACTGCCCCAAAATTTAAACACTAAGAGATGATGCTAGGAGGTGGTGCC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGCCCCAAAATTTAAACACTAAGAGATGATGCTAGGAGGTGGTGCC  897

seq1  TTTGGAAAGTAACTGGGCCACAAGGGTGGAGTCCTTACCATCATGAGTGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAAAGTAACTGGGCCACAAGGGTGGAGTCCTTACCATCATGAGTGG  947

seq1  GAATACTGCCCATATCAAAAAATCTGGAGGAAGGCCCTCATGTGTCCTAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACTGCCCATATCAAAAAATCTGGAGGAAGGCCCTCATGTGTCCTAC  997

seq1  CATATGAGGTCAGGG-TAAGAAATAACTATTGAGGAATCAAGACATCA-C  1045
      ||||||||||||||| || ||||||  |||||||  ||| |||||||| |
seq2  CATATGAGGTCAGGGTTAGGAAATACTTATTGAG--ATC-AGACATCACC  1044

seq1  CACACACTA-TCCTGCTAACATCTCTACCATGAGCTTGTCAGCCTCTAAA  1094
      | | ||||| || |||||||||||||||||||||||||||||||||| ||
seq2  CCCCCACTATTCTTGCTAACATCTCTACCATGAGCTTGTCAGCCTCTTAA  1094

seq1  AGTGGAGAGATAATTTCTGTTTACAAATCACTAGGTCTATTATAATTTTC  1144
      |||||  |||| |||||||||||||||| |||||||||||  ||| ||||
seq2  AGTGGGAAGATTATTTCTGTTTACAAATTACTAGGTCTAT--TAAATTTC  1142

seq1  ATAATATCCCAAGCAAAGGCAG  1166
      |||| ||||       ||||||
seq2  ATAA-ATCC-------AGGCAG  1156