BAC Information

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BAC

Clone NameB6Ng01-084B23
Chromosome3 (Build37)
Map Location 142,402,011 - 142,538,048
singlet/doubletdoublet
Overlap geneCcbl2, Gtf2b, Pkn2
Upstream geneUnc5c, Bmpr1b, Gabarapl2-ps3, Pdlim5, Gbp5, Gbp6, Gbp3, Gbp1, Gbp2, EG621605
Downstream geneLOC100040053, LOC100039883, 1700001N15Rik, EG668889, EG621809, LOC100039938
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084B23.bB6Ng01-084B23.g
ACCDH898183DH898184
length3061,092
definitionDH898183|Mus musculus domesticus DNA, BAC clone: B6Ng01-084B23, 5' end.DH898184|Mus musculus domesticus DNA, BAC clone: B6Ng01-084B23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,537,743 - 142,538,048)(142,402,011 - 142,403,088)
sequence
cacaatattctccatttatagcttaagctttacattttccttaagtctaa
cctattctttgtaataaagaaatgccttatcttgtcattgtctctattga
gtgatgtgtggtaagccacattgcaaacctactcaactttttctctttaa
tctctgagattttaatccttctctccctgtactccatccctaccacatct
taacgagaaattgttttgccttactgttctttttcattctctatagcctt
cacaagtctatggctaactggtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgt
gaattccatgagagaccctgcttcaatatataaacatgggaaatcaagga
agacctccaatgtccatttcaggcctccacagatatgcacacacatgtac
ccacacacatgcaaaatatgcacataccatatatacatagatcccacatg
catgttatggctactgaaaacactcatccttaggttatttaacataacat
aaatactatttttaactttttgatataacctatcgacaaattatggaaga
gttacctaagaatagaatatgagtatttacaacagaacaatgtgacgatt
tgattgactaaaatgtaaaaggaaagggggcaacgtttggaatgtaaaca
catgttaaaaacaaagtaaggttaataagacaaagcattatactgtccat
cttaaaagatataagtgcaagtatttccctgcttacaatggaaacattgt
taagaatactgtgtgttgaaatgcatttcccatgagcacggcactgaaca
gtgtagctttggcaatgcagcacagaaggggggagcagccattttccttt
gaatcatgaggccccttgctacagacagccccacattagtagagagtatg
ttcctgtatatcaccagctccccacccctagatatcaaaagcctgacttt
ctaatggatatctgtcatcataaaataaaaaaaataaaccaatggagcca
ccataagccagaggccaactttgtaaacatactactgaaaatacaaacat
gattaacagaagggaaaaaataaccttaggacttcagtttttagctgggc
acggtagcccacgcctctaacccttgccaggtctacaaagcaagttcgaa
gacagccagagctacatggagaaaccctatcctgaaaaaacaataaaaca
aacagtttcagttttcaacgtcaacacggccttactcttttcccttctgg
gaaacaacttcgggcgaactgtaacatgattttcaacgaaattacgttgg
gggaagggttgccttacgtgggggagtggtaagaagaaaagaaggatgcc
tcgggaaaggcttctgcctcaagactaatccaggtacaagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_142537743_142538048
seq2: B6Ng01-084B23.b_51_356 (reverse)

seq1  ACACACACACACACACACACACACACACACACACACCAGTTAGCCATAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACCAGTTAGCCATAGA  50

seq1  CTTGTGAAGGCTATAGAGAATGAAAAAGAACAGTAAGGCAAAACAATTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGAAGGCTATAGAGAATGAAAAAGAACAGTAAGGCAAAACAATTTC  100

seq1  TCGTTAAGATGTGGTAGGGATGGAGTACAGGGAGAGAAGGATTAAAATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTAAGATGTGGTAGGGATGGAGTACAGGGAGAGAAGGATTAAAATCT  150

seq1  CAGAGATTAAAGAGAAAAAGTTGAGTAGGTTTGCAATGTGGCTTACCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATTAAAGAGAAAAAGTTGAGTAGGTTTGCAATGTGGCTTACCACA  200

seq1  CATCACTCAATAGAGACAATGACAAGATAAGGCATTTCTTTATTACAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACTCAATAGAGACAATGACAAGATAAGGCATTTCTTTATTACAAAG  250

seq1  AATAGGTTAGACTTAAGGAAAATGTAAAGCTTAAGCTATAAATGGAGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGTTAGACTTAAGGAAAATGTAAAGCTTAAGCTATAAATGGAGAAT  300

seq1  ATTGTG  306
      ||||||
seq2  ATTGTG  306

seq1: chr3_142402011_142403088
seq2: B6Ng01-084B23.g_69_1160

seq1  GAATTCCATGAGAGACCCTGCTTCAATATATAAACATGGGAAATCAAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGAGAGACCCTGCTTCAATATATAAACATGGGAAATCAAGGA  50

seq1  AGACCTCCAATGTCCATTTCAGGCCTCCACAGATATGCACACACATGTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTCCAATGTCCATTTCAGGCCTCCACAGATATGCACACACATGTAC  100

seq1  CCACACACATGCAAAATATGCACATACCATATATACATAGATCCCACATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACACATGCAAAATATGCACATACCATATATACATAGATCCCACATG  150

seq1  CATGTTATGGCTACTGAAAACACTCATCCTTAGGTTATTTAACATAACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTATGGCTACTGAAAACACTCATCCTTAGGTTATTTAACATAACAT  200

seq1  AAATACTATTTTTAACTTTTTGATATAACCTATCGACAAATTATGGAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTATTTTTAACTTTTTGATATAACCTATCGACAAATTATGGAAGA  250

seq1  GTTACCTAAGAATAGAATATGAGTATTTACAACAGAACAATGTGACGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCTAAGAATAGAATATGAGTATTTACAACAGAACAATGTGACGATT  300

seq1  TGATTGACTAAAATGTAAAAGGAAAGGGGGCAACGTTTGGAATGTAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGACTAAAATGTAAAAGGAAAGGGGGCAACGTTTGGAATGTAAACA  350

seq1  CATGTTAAAAACAAAGTAAGGTTAATAAGACAAAGCATTATACTGTCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTAAAAACAAAGTAAGGTTAATAAGACAAAGCATTATACTGTCCAT  400

seq1  CTTAAAAGATATAAGTGCAAGTATTTCCCTGCTTACAATGGAAACATTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAGATATAAGTGCAAGTATTTCCCTGCTTACAATGGAAACATTGT  450

seq1  TAAGAATACTGTGTGTTGAAATGCATTTCCCATGAGCACGGCACTGAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATACTGTGTGTTGAAATGCATTTCCCATGAGCACGGCACTGAACA  500

seq1  GTGTAGCTTTGGCAATGCAGCACAGAAGGGGGGAGCAGCCATTTTCCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGCTTTGGCAATGCAGCACAGAAGGGGGGAGCAGCCATTTTCCTTT  550

seq1  GAATCATGAGGCCCCTTGCTACAGACAGCCCCACATTAGTAGAGAGTATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCATGAGGCCCCTTGCTACAGACAGCCCCACATTAGTAGAGAGTATG  600

seq1  TTCCTGTATATCACCAGCTCCCCACCCCTAGATATCAAAAGCCTGAC-TT  649
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTCCTGTATATCACCAGCTCCCCACCCCTAGATATCAAAAGCCTGACTTT  650

seq1  CTAATGGATATCTGTCATCATAAAATAAAAAAA--TAACCAATGGAGCCA  697
      |||||||||||||||||||||||||||||||||   ||||||||||||||
seq2  CTAATGGATATCTGTCATCATAAAATAAAAAAAATAAACCAATGGAGCCA  700

seq1  CCATAAGCCAGAGGCCAACTTTGTAAACATACTACTGAAAATACAAACAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAGCCAGAGGCCAACTTTGTAAACATACTACTGAAAATACAAACAT  750

seq1  GATTAACAGAAGGGAAAAAATAACCTTAGGACTTCAG-TTTTAGCTGGGC  796
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GATTAACAGAAGGGAAAAAATAACCTTAGGACTTCAGTTTTTAGCTGGGC  800

seq1  ACGGTAGCCCACGCCTCTAACCCTTGCCAGGTCTACAAAGCAAGTTCGAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTAGCCCACGCCTCTAACCCTTGCCAGGTCTACAAAGCAAGTTCGAA  850

seq1  GACAGCCAGAGCTACATGGAGAAACCCTATCCTGAAAAAACAAT-AAACA  895
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GACAGCCAGAGCTACATGGAGAAACCCTATCCTGAAAAAACAATAAAACA  900

seq1  AACAG-TTCAGTTTTCAACGTCAACACGGCCCTACCCTTTTCCCTTCTTG  944
      ||||| ||||||||||||||||||||||||| ||| |||||||||||| |
seq2  AACAGTTTCAGTTTTCAACGTCAACACGGCCTTACTCTTTTCCCTTCTGG  950

seq1  GAAACAAC-TCGGGCGAACTGTAACATGATTT--CACG-AATTACGT---  987
      |||||||| |||||||||||||||||||||||   ||| ||||||||   
seq2  GAAACAACTTCGGGCGAACTGTAACATGATTTTCAACGAAATTACGTTGG  1000

seq1  GGGGAGGGTTGCCCTACGT-GGGGAGTGGT-AGAAGAAAAG-AGGATGC-  1033
      ||| ||||||||| ||||| |||||||||| |||||||||| ||||||| 
seq2  GGGAAGGGTTGCCTTACGTGGGGGAGTGGTAAGAAGAAAAGAAGGATGCC  1050

seq1  -CCGGAAAGGCTTCCTGCCTCAAAGGACAGATCCAGGTACCAAGAA  1078
       | |||||||||| |||||||||  |||  ||||||||| ||||||
seq2  TCGGGAAAGGCTT-CTGCCTCAA--GACTAATCCAGGTA-CAAGAA  1092