BAC Information

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BAC

Clone NameB6Ng01-084F14
Chromosome3 (Build37)
Map Location 119,621,537 - 119,806,204
singlet/doubletdoublet
Overlap genenone
Upstream geneDpyd, LOC100043275, LOC100043278, Ptbp2
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084F14.bB6Ng01-084F14.g
ACCDH898335DH898336
length1,1571,185
definitionDH898335|Mus musculus domesticus DNA, BAC clone: B6Ng01-084F14, 5' end.DH898336|Mus musculus domesticus DNA, BAC clone: B6Ng01-084F14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,805,037 - 119,806,204)(119,621,537 - 119,622,735)
sequence
gaattccaggacagccaggactacacagagaaaccctgtctcaaaaaaaa
aaaaagtttcctattgtgattttgtcatttttccacatatataaaaatgt
aataaaactacatatgtaaagacatatgcattcagatttttatatactct
atgagatctataattttttcattaaatattgactttctttactcttcaaa
attggtttatttttaaagacaattttgtctaatagctgtctccacagcta
tgtctctgactcacagctatatctgataatttggttcagttatttgctgg
aagcactcagcctttaatgtctcattctcatatacctaatgaatgaaggc
attttgaaaataccacacccctcagtttggttacctatctgaatcaagaa
gactcttattttgacttgcatatctatgccattcacgttttactgtgatc
attgccacatttggggttagttagttagatcatttaccacattccttatc
acaatcctgtcttgtctctgcttctttataatttcctccccaccctgtct
ctttgaattcatcaggcactctatgttttactttgcttccacaatgtcta
cagcatcatatatttattcagtcagacagaaacacgcttttataacaagt
tgtagtgacttgatataacataatcattttttggacacctgccagtatgg
tccaagtgtaactggacagccagtggatttccttcatgagataaatccct
gggatatagaaaacttctctatacaagttgtcttaaaagaaaagagtaaa
gacaatgaaatgaaatatctcttgggataatgatggataacttaatcagt
atattagaacacacaatgactgagtcaagagcctctgatctactcaaaca
gatataaccaaaaatcaccatatagactcacaactaaaactatatatcag
aaatcacagaattggaaataaacagaagaaaatattacaaattgtttgag
ggtatggatgcaagtataacatcttctttgcttagggacagcttgtcatc
tagaattaagtttctagaaagctctagaatgctctttcaaagaaaaagtt
taagtaattcatgaaatataaatgtcatagctatacaccaacacgctttc
taaagct
gaattcaaaaccatgtcagaaatactcggagctcatgttcttcttctgtg
cttctatctgtaggaaaaattgtggtctttgaactaagaatgaaaaaagg
ctgaatgcaagccacaagataaatttcctaatctttctaccttctgtctt
cttcatctttaacattctgatctttcagtacatagctgtactctcctgag
ttcataagaatgaagaatagccaataatgaggttgtgaaacttcaaagaa
atgtattttcttttataattacataatgctttgtaaacagcagtacattt
ttatattcattctttaggaaaggaactcattgccttgcacaaattttgat
tgatcaaattattcctggtaatactagagcaataaaatgaatattgattg
acaattaaatagtacttgctttatatagaaaaaactggtacatgtatagt
tctgccaggttgacttttgccaagtattttacaattatccagacaaagaa
gggttaagacatggcctgcaaactggaaaccagccagtcatatctccaga
tgtgtttgatgttggcatcacagtgcttaaaacctggattgcctttggaa
tggatatgtgctctgatcccaccagagtccccatttccttcattcttcca
tggttttattctatagttctatactgccttcttcactaaatttcatggta
ggatttgtttatttcatgaatttatttgggaaaaaaaacttagccaacat
gtatcatagtgaactttcagtgccttattaaatctcagatactgcttgcc
accgcagtagaaaacatgaaatgctttgtgtcttagccactaatgtattg
ccgtgaagagaaaccatgaccatggcaataaaggaaagcatttaattgga
gctggcttacagtttcagagacttagtctattatcagcatggtgggaagc
gtggtggcagacagaaagacagtgtgtggaaatgagctgaaagttcttgc
atctggcagccaaagagagagaaactaagtctgcacgggctttagaagcc
ttaacgcccaccccaccgtgaccacttcttcaacaggctacacctcttaa
tcctttcaaatggtgctacttcgtagcatttaaatattgacaatatgggc
aatcttatcagtgccacaatgtttggacactctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_119805037_119806204
seq2: B6Ng01-084F14.b_42_1198 (reverse)

seq1  AGCTATAGAAAGC-TGTTGGTGATAAGCTATGACATTTATATTTCATTGA  49
      |||| |||||||| ||||||||   ||||||||||||||||||||||   
seq2  AGCTTTAGAAAGCGTGTTGGTGTATAGCTATGACATTTATATTTCAT---  47

seq1  AAATTACTTTAACTGTATTCTTTTGAAAGAGCATTCTAGATGTCTTCTAG  99
       |||||||| |||| | ||| ||||||||||||||||||| |  ||||||
seq2  GAATTACTTAAACT-TTTTC-TTTGAAAGAGCATTCTAGA-GCTTTCTAG  94

seq1  AAACTTAAATTCTAGATTGACAAGCTTGTTCCCTAAGCAAAGAAGATGTT  149
      |||||| ||||||||| |||||||||   |||||||||||||||||||||
seq2  AAACTT-AATTCTAGA-TGACAAGCT--GTCCCTAAGCAAAGAAGATGTT  140

seq1  ATACTTGCATCCATACCCTCAAACAATTTTGTAATATTTTCTTCTGTTTA  199
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATACTTGCATCCATACCCTCAAACAA-TTTGTAATATTTTCTTCTGTTTA  189

seq1  TTTCCAATTCTGTGATTTCTGATATATAGTTTTTAGTTGTGAGTCTATAT  249
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTTCCAATTCTGTGATTTCTGATATATAG-TTTTAGTTGTGAGTCTATAT  238

seq1  GGTGATTTTTGGTTATATCTGTTTGAGTAGATCAGAGGCTCTTGACTCAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATTTTTGGTTATATCTGTTTGAGTAGATCAGAGGCTCTTGACTCAG  288

seq1  TCATTGTGTGTTCTAATATACTGATTAAGTTATCCATCATTATCCCAAGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTGTGTTCTAATATACTGATTAAGTTATCCATCATTATCCCAAGA  338

seq1  GATATTTCATTTCATTGTCTTTACTCTTTTCTTTTAAGACAACTTGTATA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTCATTTCATTGTCTTTACTCTTTTCTTTTAAGACAACTTGTATA  388

seq1  GAGAAGTTTTCTATATCCCAGGGATTTATCTCATGAAGGAAATCCACTGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTTTTCTATATCCCAGGGATTTATCTCATGAAGGAAATCCACTGG  438

seq1  CTGTCCAGTTACACTTGGACCATACTGGCAGGTGTCCAAAAAATGATTAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCAGTTACACTTGGACCATACTGGCAGGTGTCCAAAAAATGATTAT  488

seq1  GTTATATCAAGTCACTACAACTTGTTATAAAAGCGTGTTTCTGTCTGACT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATATCAAGTCACTACAACTTGTTATAAAAGCGTGTTTCTGTCTGACT  538

seq1  GAATAAATATATGATGCTGTAGACATTGTGGAAGCAAAGTAAAACATAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAATATATGATGCTGTAGACATTGTGGAAGCAAAGTAAAACATAGA  588

seq1  GTGCCTGATGAATTCAAAGAGACAGGGTGGGGAGGAAATTATAAAGAAGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTGATGAATTCAAAGAGACAGGGTGGGGAGGAAATTATAAAGAAGC  638

seq1  AGAGACAAGACAGGATTGTGATAAGGAATGTGGTAAATGATCTAACTAAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAAGACAGGATTGTGATAAGGAATGTGGTAAATGATCTAACTAAC  688

seq1  TAACCCCAAATGTGGCAATGATCACAGTAAAACGTGAATGGCATAGATAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCCAAATGTGGCAATGATCACAGTAAAACGTGAATGGCATAGATAT  738

seq1  GCAAGTCAAAATAAGAGTCTTCTTGATTCAGATAGGTAACCAAACTGAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTCAAAATAAGAGTCTTCTTGATTCAGATAGGTAACCAAACTGAGG  788

seq1  GGTGTGGTATTTTCAAAATGCCTTCATTCATTAGGTATATGAGAATGAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGGTATTTTCAAAATGCCTTCATTCATTAGGTATATGAGAATGAGA  838

seq1  CATTAAAGGCTGAGTGCTTCCAGCAAATAACTGAACCAAATTATCAGATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAAGGCTGAGTGCTTCCAGCAAATAACTGAACCAAATTATCAGATA  888

seq1  TAGCTGTGAGTCAGAGACATAGCTGTGGAGACAGCTATTAGACAAAATTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGTGAGTCAGAGACATAGCTGTGGAGACAGCTATTAGACAAAATTG  938

seq1  TCTTTAAAAATAAACCAATTTTGAAGAGTAAAGAAAGTCAATATTTAATG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAAAAATAAACCAATTTTGAAGAGTAAAGAAAGTCAATATTTAATG  988

seq1  AAAAAATTATAGATCTCATAGAGTATATAAAAATCTGAATGCATATGTCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTATAGATCTCATAGAGTATATAAAAATCTGAATGCATATGTCT  1038

seq1  TTACATATGTAGTTTTATTACATTTTTATATATGTGGAAAAATGACAAAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATATGTAGTTTTATTACATTTTTATATATGTGGAAAAATGACAAAA  1088

seq1  TCACAATAGGAAACTTTTTTTTTTTTTGAGACAGGGTTTCTCTGTGTAGT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATAGGAAACTTTTTTTTTTTTTGAGACAGGGTTTCTCTGTGTAGT  1138

seq1  CCTGGCTGTCCTGGAATTC  1168
      |||||||||||||||||||
seq2  CCTGGCTGTCCTGGAATTC  1157

seq1: chr3_119621537_119622735
seq2: B6Ng01-084F14.g_70_1254

seq1  GAATTCAAAACCATGTCAGAAATACTCGGAGCTCATGTTCTTCTTCTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAACCATGTCAGAAATACTCGGAGCTCATGTTCTTCTTCTGTG  50

seq1  CTTCTATCTGTAGGAAAAATTGTGGTCTTTGAACTAAGAATGAAAAAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTATCTGTAGGAAAAATTGTGGTCTTTGAACTAAGAATGAAAAAAGG  100

seq1  CTGAATGCAAGCCACAAGATAAATTTCCTAATCTTTCTACCTTCTGTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATGCAAGCCACAAGATAAATTTCCTAATCTTTCTACCTTCTGTCTT  150

seq1  CTTCATCTTTAACATTCTGATCTTTCAGTACATAGCTGTACTCTCCTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCTTTAACATTCTGATCTTTCAGTACATAGCTGTACTCTCCTGAG  200

seq1  TTCATAAGAATGAAGAATAGCCAATAATGAGGTTGTGAAACTTCAAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAAGAATGAAGAATAGCCAATAATGAGGTTGTGAAACTTCAAAGAA  250

seq1  ATGTATTTTCTTTTATAATTACATAATGCTTTGTAAACAGCAGTACATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTTTCTTTTATAATTACATAATGCTTTGTAAACAGCAGTACATTT  300

seq1  TTATATTCATTCTTTAGGAAAGGAACTCATTGCCTTGCACAAATTTTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTCATTCTTTAGGAAAGGAACTCATTGCCTTGCACAAATTTTGAT  350

seq1  TGATCAAATTATTCCTGGTAATACTAGAGCAATAAAATGAATATTGATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAAATTATTCCTGGTAATACTAGAGCAATAAAATGAATATTGATTG  400

seq1  ACAATTAAATAGTACTTGCTTTATATAGAAAAAACTGGTACATGTATAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTAAATAGTACTTGCTTTATATAGAAAAAACTGGTACATGTATAGT  450

seq1  TCTGCCAGGTTGACTTTTGCCAAGTATTTTACAATTATCCAGACAAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCAGGTTGACTTTTGCCAAGTATTTTACAATTATCCAGACAAAGAA  500

seq1  GGGTTAAGACATGGCCTGCAAACTGGAAACCAGCCAGTCATATCTCCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTAAGACATGGCCTGCAAACTGGAAACCAGCCAGTCATATCTCCAGA  550

seq1  TGTGTTTGATGTTGGCATCACAGTGCTTAAAACCTGGATTGCCTTTGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTGATGTTGGCATCACAGTGCTTAAAACCTGGATTGCCTTTGGAA  600

seq1  TGGATATGTGCTCTGATCCCACCAGAGTCCCCATTTCCTTCATTCTTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATATGTGCTCTGATCCCACCAGAGTCCCCATTTCCTTCATTCTTCCA  650

seq1  TGGTTTTATTCTATAGTTCTATACTGCCTTCTTCACTAAATTTCATGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTATTCTATAGTTCTATACTGCCTTCTTCACTAAATTTCATGGTA  700

seq1  GGATTTGTTTATTTCATGAATTTATTTGGGAAAAAAAACTTAGCCAACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTGTTTATTTCATGAATTTATTTGGGAAAAAAAACTTAGCCAACAT  750

seq1  GTATCATAGTGAACTTTCAGTGCCTTATTAAATCTCAGATACTGCTTGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCATAGTGAACTTTCAGTGCCTTATTAAATCTCAGATACTGCTTGCC  800

seq1  ACCGCAGTAGAAAACATGAAATGCTTTGTGTCTTAGCCACTAATGTATTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCAGTAGAAAACATGAAATGCTTTGTGTCTTAGCCACTAATGTATTG  850

seq1  CCGTGAAGAGAAACCATGACCATGGCAATAAAGGAAAGCATTTAATTGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGAAGAGAAACCATGACCATGGCAATAAAGGAAAGCATTTAATTGGA  900

seq1  GCTGGCTTACAGTTTCAGAGACTTAGTCTATTATCAGCATGGTGGGAAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTTACAGTTTCAGAGACTTAGTCTATTATCAGCATGGTGGGAAGC  950

seq1  GTGGTGGCAGACAGACAGACAGTGTGTTGGAAAATGAGCTGAAAGTTC-T  999
      ||||||||||||||| |||||||||||  | ||||||||||||||||| |
seq2  GTGGTGGCAGACAGAAAGACAGTGTGT--GGAAATGAGCTGAAAGTTCTT  998

seq1  GCATCTGGCAGCCAAAAGAGAGAGACACTAAGTCTGGCACGGGCTTTAGA  1049
      ||||||||||||| ||||||||||| ||||||||| ||||||||||||||
seq2  GCATCTGGCAGCC-AAAGAGAGAGAAACTAAGTCT-GCACGGGCTTTAGA  1046

seq1  AGCCTTAACGCCCACCCCACCGTGACACACTTCCTTCAACAAGGCTACAC  1099
      |||||||||||||||||||||||||| ||||| ||||||| |||||||||
seq2  AGCCTTAACGCCCACCCCACCGTGAC-CACTT-CTTCAAC-AGGCTACAC  1093

seq1  CTCTTAATCCTTTCAAATGGTGCTACTCCCTAAGCATTTAAATATTTGAA  1149
      ||||||||||||||||||||||||||| | | |||||||||||| |||| 
seq2  CTCTTAATCCTTTCAAATGGTGCTACTTCGT-AGCATTTAAATA-TTGAC  1141

seq1  CATATGGGGCCATTCTTATTCAAATTGCCACACAATGTTTGGACA-TCTA  1198
       |||||||  || ||||||    | |||  ||||||||||||||| ||||
seq2  AATATGGG--CAATCTTAT---CAGTGC--CACAATGTTTGGACACTCTA  1184

seq1  A  1199
      |
seq2  A  1185