BAC Information

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BAC

Clone NameB6Ng01-084N13
Chromosome3 (Build37)
Map Location 60,223,586 - 60,393,995
singlet/doubletdoublet
Overlap geneLOC100040485, Mbnl1
Upstream geneEG666756, EG229330, EG435732, LOC433597, LOC433598, LOC100040407, LOC669780, EG666803, C130079G13Rik, LOC676914, Aadacl2, Aadac, Sucnr1, LOC669823
Downstream geneLOC676933, LOC100040501, EG666853, P2ry1, Rap2b, LOC666891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084N13.bB6Ng01-084N13.g
ACCDH898681DH898682
length1,212509
definitionDH898681|Mus musculus domesticus DNA, BAC clone: B6Ng01-084N13, 5' end.DH898682|Mus musculus domesticus DNA, BAC clone: B6Ng01-084N13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,223,586 - 60,224,812)(60,393,481 - 60,393,995)
sequence
gaattccttaaggcccctgataaggcctgggtgttcattatgtctagctt
atataatcccttgtttctgccttagctactcccaatgtttacatcagtgc
tcattcttcagtgtcttcttcatagttatctgtgcccttgtgggtgccaa
ttgaggctctagattgcttagattagcaagccttaggaaaggaaactttt
catgcaatcaggataatcacattatacacacacacatacaatcagtctct
acaagacaaaatatctcatgtttactctcatttgtcttgaattttatata
gatatatgaatatatatacaagatggtatggaagtaaaagtggaactgtc
cagggaacattggggactgacaggaggaaggagggtcacagattatgtag
gaatataatatgcttacagcatagcataataaaattagattaaaagcgag
agtgaaatctgacaccattcactagcactgaccatcagcataaagtacaa
ggtgaattttgtctctagtgtctgtgacatttgtaatcagtagatcacaa
ctgtacatcttcagtaaccaggaccaaataccagacaaagatgagggaca
atgaaatggccaacaaaagttataccagctgaaatgccttcaacgaactc
tccccatcttgtagtcaataacctcaatatctatttcactgctgaacact
agatccaggagaaactagaagatggaatattttaggtgcactcagcagtc
tttgttccataaaatatgtcttcttaggatgggaagggaagcaataagac
attatcacttaaaaaacagtaagtgtcccatcatttttattagatactta
gctctttattcataacagaaagatagctgattttttaattattaagtcaa
atatgaggactaattttatgacaacttggctagaccatgctacttagtgc
ccagtaaagtaccagcataaatgccatgctaaagtacttttttagatgtg
atgaatattttgaataaaacaaataataatccataagcatatctaatccg
ccggaagacctctagagcaaaagaacaaggttccccacctccaaaaaagg
aatctttattttttaggcacaaaacaatactcaatttcttggcttccagt
ttttgaactccttgtccccatatcaattcctaagtagctttccttccgtt
atgataaaaaaa
aggctttcctcttttctggtcccatgacaagttcttattacacacacaca
cacacacactcacagccagttaactttataatttatcattacttgaagga
atactggctccatataataagccctaaactgtcttcatccatatctaact
gggtcacaaatgggagattttaggtaacagtttctagctacttaaagagt
catttatagaactcaatagctgttctaggcagtgttttgtagaacattcc
taaggtttgatgatgaagattcttgtatattaaaaccaatagtgacattt
acaatatcccaaaataccctccctgctgacgcagtatcaaggcactccac
ctcactgggatactgtgactttcccagagtgctcaggagcctgcattgca
caactccattaatcatcttggaaatgaccaaagtgaaactctatacctct
gcttggtgttctgagtgcacaagctttgggttggcaccttggggggggag
gggggagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_60223586_60224812
seq2: B6Ng01-084N13.b_47_1258

seq1  GAATTCCTTAAGGCCCCTGATAAGGCCTGGGTGTTCATTATGTCTAGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAAGGCCCCTGATAAGGCCTGGGTGTTCATTATGTCTAGCTT  50

seq1  ATATAATCCCTTGTTTCTGCCTTAGCTACTCCCAATGTTTACATCAGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATCCCTTGTTTCTGCCTTAGCTACTCCCAATGTTTACATCAGTGC  100

seq1  TCATTCTTCAGTGTCTTCTTCATAGTTATCTGTGCCCTTGTGGGTGCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTTCAGTGTCTTCTTCATAGTTATCTGTGCCCTTGTGGGTGCCAA  150

seq1  TTGAGGCTCTAGATTGCTTAGATTAGCAAGCCTTAGGAAAGGAAACTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGCTCTAGATTGCTTAGATTAGCAAGCCTTAGGAAAGGAAACTTTT  200

seq1  CATGCAATCAGGATAATCACATTATACACACACACATACAATCAGTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAATCAGGATAATCACATTATACACACACACATACAATCAGTCTCT  250

seq1  ACAAGACAAAATATCTCATGTTTACTCTCATTTGTCTTGAATTTTATATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGACAAAATATCTCATGTTTACTCTCATTTGTCTTGAATTTTATATA  300

seq1  GATATATGAATATATATACAAGATGGTATGGAAGTAAAAGTGGAACTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATATGAATATATATACAAGATGGTATGGAAGTAAAAGTGGAACTGTC  350

seq1  CAGGGAACATTGGGGACTGACAGGAGGAAGGAGGGTCACAGATTATGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAACATTGGGGACTGACAGGAGGAAGGAGGGTCACAGATTATGTAG  400

seq1  GAATATAATATGCTTACAGCATAGCATAATAAAATTAGATTAAAAGCGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATAATATGCTTACAGCATAGCATAATAAAATTAGATTAAAAGCGAG  450

seq1  AGTGAAATCTGACACCATTCACTAGCACTGACCATCAGCATAAAGTACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAATCTGACACCATTCACTAGCACTGACCATCAGCATAAAGTACAA  500

seq1  GGTGAATTTTGTCTCTAGTGTCTGTGACATTTGTAATCAGTAGATCACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAATTTTGTCTCTAGTGTCTGTGACATTTGTAATCAGTAGATCACAA  550

seq1  CTGTACATCTTCAGTAACCAGGACCAAATACCAGACAAAGATGAGGGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACATCTTCAGTAACCAGGACCAAATACCAGACAAAGATGAGGGACA  600

seq1  ATGAAATGGCCAACAAAAGTTATACCAGCTGAAATGCCTTCAACGAACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATGGCCAACAAAAGTTATACCAGCTGAAATGCCTTCAACGAACTC  650

seq1  TCCCCATCTTGTAGTCAATAACCTCAATATCTATTTCACTGCTGAACACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCATCTTGTAGTCAATAACCTCAATATCTATTTCACTGCTGAACACT  700

seq1  AGATCCAGGAGAAACTAGAAGATGGAATATTTTAGGTGCACTCAGCAGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCAGGAGAAACTAGAAGATGGAATATTTTAGGTGCACTCAGCAGTC  750

seq1  TTTGTTCCATAAAATATGTCTTCTTAGGATGGGAAGGGAAGCAATAAGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCCATAAAATATGTCTTCTTAGGATGGGAAGGGAAGCAATAAGAC  800

seq1  ATTATCACTTAAAAAACAGTAAGTGTCCCATCATTTTTATTAGATACTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCACTTAAAAAACAGTAAGTGTCCCATCATTTTTATTAGATACTTA  850

seq1  GCTCTTTATTCATAACAGAAAGATAGCTGATTTTTTAATTATTAAGTCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTTATTCATAACAGAAAGATAGCTGATTTTTTAATTATTAAGTCAA  900

seq1  ATATGAGGACTAATTTTATGACAACTTGGCTAGACCATGCTACTTAGGTG  950
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATATGAGGACTAATTTTATGACAACTTGGCTAGACCATGCTACTTA-GTG  949

seq1  CCCAGTAAAGTACCAGCATAAATGCCATGCTAAAAGTACTTTTTTAGATG  1000
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CCCAGTAAAGTACCAGCATAAATGCCATGCT-AAAGTACTTTTTTAGATG  998

seq1  TGATGAATATTTTGAATAAAACAAATAATAATCCATAAGCATTATCTAAT  1050
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGATGAATATTTTGAATAAAACAAATAATAATCCATAAGCA-TATCTAAT  1047

seq1  CCGCC-GAAGACCTCTAGAGCAAAAGACCAAGGTCCCCCACCTCCAAAAA  1099
      ||||| ||||||||||||||||||||| |||||| |||||||||| ||||
seq2  CCGCCGGAAGACCTCTAGAGCAAAAGAACAAGGTTCCCCACCTCC-AAAA  1096

seq1  AAGGAATCTT--ATTTCTAAGCAC-AAACAATAACTCAAATTTCCTTGGG  1146
      ||||||||||   ||| || |||| ||||||| |||| ||||||  | ||
seq2  AAGGAATCTTTATTTTTTAGGCACAAAACAAT-ACTC-AATTTC--TTGG  1142

seq1  CTTCCAGTCTTCTGAACTCCCTTGTCCCCATAATCAATTCCTTAGGGTAA  1196
      |||||||| || |||||| |||||||||||| |||||||||| ||     
seq2  CTTCCAGT-TTTTGAACT-CCTTGTCCCCAT-ATCAATTCCTAAG----T  1185

seq1  ATCTTTCTCTTTTCGTATTATGATAAAAAAA  1227
      | |||  || || ||  ||||||||||||||
seq2  AGCTT--TCCTTCCG--TTATGATAAAAAAA  1212

seq1: chr3_60393481_60393995
seq2: B6Ng01-084N13.g_70_584 (reverse)

seq1  TCCTCCCCCCTCCCCCCCCAAGGTGCCAACCCAAAGCTTGTGCACTCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCCCCTCCCCCCCCAAGGTGCCAACCCAAAGCTTGTGCACTCAGA  50

seq1  ACACCAAGCAGAGGTATAGAGTTTCACTTTGGTCATTTCCAAGATGATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAAGCAGAGGTATAGAGTTTCACTTTGGTCATTTCCAAGATGATTA  100

seq1  ATGGAGTTGTGCAATGCAGGCTCCTGAGCACTCTGGGAAAGTCACAGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGTTGTGCAATGCAGGCTCCTGAGCACTCTGGGAAAGTCACAGTAT  150

seq1  CCCAGTGAGGTGGAGTGCCTTGATACTGCGTCAGCAGGGAGGGTATTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTGAGGTGGAGTGCCTTGATACTGCGTCAGCAGGGAGGGTATTTTG  200

seq1  GGATATTGTAAATGTCACTATTGGTTTTAATATACAAGAATCTTCATCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATTGTAAATGTCACTATTGGTTTTAATATACAAGAATCTTCATCAT  250

seq1  CAAACCTTAGGAATGTTCTACAAAACACTGCCTAGAACAGCTATTGAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCTTAGGAATGTTCTACAAAACACTGCCTAGAACAGCTATTGAGTT  300

seq1  CTATAAATGACTCTTTAAGTAGCTAGAAACTGTTACCTAAAATCTCCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAATGACTCTTTAAGTAGCTAGAAACTGTTACCTAAAATCTCCCAT  350

seq1  TTGTGACCCAGTTAGATATGGATGAAGACAGTTTAGGGCTTATTATATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGACCCAGTTAGATATGGATGAAGACAGTTTAGGGCTTATTATATGG  400

seq1  AGCCAGTATTCCTTCAAGTAATGATAAATTATAAAGTTAACTGGCTGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGTATTCCTTCAAGTAATGATAAATTATAAAGTTAACTGGCTGTGA  450

seq1  GTGTGTGTGTGTGTGTGTGTAATAAGAACTTGTCATGGGACCAGAAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTAATAAGAACTTGTCATGGGACCAGAAAAGA  500

seq1  GGAAAGCCTGAATTC  515
      |||||||||||||||
seq2  GGAAAGCCTGAATTC  515