BAC Information

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BAC

Clone NameB6Ng01-084O15
Chromosome3 (Build37)
Map Location 89,508,601 - 89,697,837
singlet/doubletdoublet
Overlap geneLOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra
Upstream gene2810403A07Rik, Rit1, Syt11, 5830417I10Rik, Msto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3
Downstream geneAtp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b, Slc27a3, Ints3, Npr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16, EG628324, S100a3, S100a4, S100a5, S100a6, S100a7a, S100a8, S100a9, LOC668165, LOC383949, Pglyrp4, LOC329706, EG545541, LOC635737
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084O15.bB6Ng01-084O15.g
ACCDH898732DH898733
length1,063685
definitionDH898732|Mus musculus domesticus DNA, BAC clone: B6Ng01-084O15, 5' end.DH898733|Mus musculus domesticus DNA, BAC clone: B6Ng01-084O15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,696,765 - 89,697,837)(89,508,601 - 89,509,231)
sequence
gaattctgatagtcgctcttcagctgcagagtgctgctgccaacattgca
acagagccacctgccagtagagactctctttggacagcatttctttcttt
ctttctcccttttttttttattaagatttatttatttattacatgtaagt
aacactgtagctgtcttcagacactccagaagagggagtcagatcttgtt
acagatggttgtgagccaccatgtggttgtgggatttgaactccggacct
ttggaagagcagtcgggtgctcttactcactgagccatctcaccagcccc
atctttctttctttttaaaaaagatttatttatctaatgtatgtgagcat
cctgtcactgacacaccagaagagggcatcgaatccaattacagatggtt
gtgagccaccatgtggtatctgggaattgaactcatgacctctggaagag
cagacagtgtttttaaccactgagccatctctcccgcccctttggtcaat
ctaagctcatatatgttcaaaatatagacatgagcttgatgcttgtgtta
ggttttttcgttacagctgctttgtccagtggaaataggagagtaaggat
attgatacattaaacaggagggccattggacctgctaaactttacctcat
tcaggccaggcacacacctgtgcaggcacacacctgtgcaggcacacacc
tgtgcaggcacacacctgtgcaggcacacacctgggcaggcacacacctg
ggcaggcacacacctgtaacccagcattcacgaggcacagacacaagtat
caaggtcctcctcagttatatagtttgagaccagcctgggctacaggaga
ccctgaaggtatgcttacagcttcagaggttaagtccatgatcatcgtag
agagaatcgtggtgataggccagcacggtgctggagcagcagcagagagc
tgaacatcctcatctggagacagcagcagagcgagggaggaggggatgat
gtttctcaatcaagccacacctcagcagaccacacccacgaatgccacac
ccccttcagcaag
gaattccttatcgatgagtcgatgaaacattttagaactagataaacaga
tgggctgcattaacacatggaagtctgtgaaagaatctcaagaaaaagtg
cctgctgctgtccatgctacatacagcagagctgaccctcgaagacaccc
tggtatggcaaagaagccattataaaaaatctggtattgacaccaggtgt
ggcagtccataaccccaacactgaggatactgaggcaggaggatggctag
tttcagactagcctgtgcacttagcaagactgattcaaaaatccaacaag
tgaaacatacaattccactaaaatgtaaaagagctagaataggcaaatct
atagaaatagaaaccatattagtggtggcataagactgggcagggggcta
gggacatggtttagtggttaagagcattagttgctcttccaaaggaccag
agttcaattcccaacatcctcttctggcctccctgagcaccaggcaaaca
catagtgcacagacatacatatgggtaaacactcatatatacaaaataaa
acttaaaaaaaagacagctatagttggctctttaaaaagactgagaaagg
ttggtttgggggggatggtgagtctggagtttattttgacaaaaaatgat
ctggtgtccagcttgtgggtgctggctgcacatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_89696765_89697837
seq2: B6Ng01-084O15.b_48_1110 (reverse)

seq1  CTTGCTGGAGGGGGTGTGGCCTTCTGTGGGTGTGGTCTTGCTGGAGGTGT  50
      ||||||| |||||||||||| ||| |||||||||||| |||| |||||||
seq2  CTTGCTGAAGGGGGTGTGGCATTC-GTGGGTGTGGTC-TGCT-GAGGTGT  47

seq1  GGCCTTGATGGAGAAACCATCCTTCCCCTCCTCCCCTCGGCTCCCTGCTT  100
      || |||||| |||||| ||| | ||||||||| ||||||   | |||| |
seq2  GG-CTTGATTGAGAAA-CAT-CATCCCCTCCT-CCCTCG---CTCTGC-T  89

seq1  GCTGTCTCCAGATGAGGATGTTCAGCTCTCTGCTGCTGCTCCAGCACCGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTCCAGATGAGGATGTTCAGCTCTCTGCTGCTGCTCCAGCACCGT  139

seq1  GCTGGCCTATCACCACGATTCTCTCTACGATGATCATGGACTTAACCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCTATCACCACGATTCTCTCTACGATGATCATGGACTTAACCTCT  189

seq1  GAAGCTGTAAGCATACC-TCAGGGTCTCCTGTAGCCCAGGCTGGTCTCAA  249
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GAAGCTGTAAGCATACCTTCAGGGTCTCCTGTAGCCCAGGCTGGTCTCAA  239

seq1  ACTATATAACTGAGGAGGACCTTGATACTTGTGTCTGTGCCTCCTGAATG  299
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ACTATATAACTGAGGAGGACCTTGATACTTGTGTCTGTGCCTCGTGAATG  289

seq1  CTGGGTTACAGGTGTGTGCCTGCCCAGGTGTGTGCCTGCCCAGGTGTGTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTACAGGTGTGTGCCTGCCCAGGTGTGTGCCTGCCCAGGTGTGTG  339

seq1  CCTGCACAGGTGTGTGCCTGCACAGGTGTGTGCCTGCACAGGTGTGTGCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCACAGGTGTGTGCCTGCACAGGTGTGTGCCTGCACAGGTGTGTGCC  389

seq1  TGCACAGGTGTGTGCCTGGCCTGAATGAGGTAAAGTTTAGCAGGTCCAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGGTGTGTGCCTGGCCTGAATGAGGTAAAGTTTAGCAGGTCCAAT  439

seq1  GGCCCTCCTGTTTAATGTATCAATATCCTTACTCTCCTATTTCCACTGGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTCCTGTTTAATGTATCAATATCCTTACTCTCCTATTTCCACTGGA  489

seq1  CAAAGCAGCTGTAACGAAAAAACCTAACACAAGCATCAAGCTCATGTCTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCAGCTGTAACGAAAAAACCTAACACAAGCATCAAGCTCATGTCTA  539

seq1  TATTTTGAACATATATGAGCTTAGATTGACCAAAGGGGCGGGAGAGATGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGAACATATATGAGCTTAGATTGACCAAAGGGGCGGGAGAGATGG  589

seq1  CTCAGTGGTTAAAAACACTGTCTGCTCTTCCAGAGGTCATGAGTTCAATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGGTTAAAAACACTGTCTGCTCTTCCAGAGGTCATGAGTTCAATT  639

seq1  CCCAGATACCACATGGTGGCTCACAACCATCTGTAATTGGATTCGATGCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGATACCACATGGTGGCTCACAACCATCTGTAATTGGATTCGATGCC  689

seq1  CTCTTCTGGTGTGTCAGTGACAGGATGCTCACATACATTAGATAAATAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTGGTGTGTCAGTGACAGGATGCTCACATACATTAGATAAATAAA  739

seq1  TCTTTTTTAAAAAGAAAGAAAGATGGGGCTGGTGAGATGGCTCAGTGAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTAAAAAGAAAGAAAGATGGGGCTGGTGAGATGGCTCAGTGAGT  789

seq1  AAGAGCACCCGACTGCTCTTCCAAAGGTCCGGAGTTCAAATCCCACAACC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCACCCGACTGCTCTTCCAAAGGTCCGGAGTTCAAATCCCACAACC  839

seq1  ACATGGTGGCTCACAACCATCTGTAACAAGATCTGACTCCCTCTTCTGGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTGGCTCACAACCATCTGTAACAAGATCTGACTCCCTCTTCTGGA  889

seq1  GTGTCTGAAGACAGCTACAGTGTTACTTACATGTAATAAATAAATAAATC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGAAGACAGCTACAGTGTTACTTACATGTAATAAATAAATAAATC  939

seq1  TTAATAAAAAAAAAAGGGAGAAAGAAAGAAAGAAATGCTGTCCAAAGAGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAAAAAAAAAAGGGAGAAAGAAAGAAAGAAATGCTGTCCAAAGAGA  989

seq1  GTCTCTACTGGCAGGTGGCTCTGTTGCAATGTTGGCAGCAGCACTCTGCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTACTGGCAGGTGGCTCTGTTGCAATGTTGGCAGCAGCACTCTGCA  1039

seq1  GCTGAAGAGCGACTATCAGAATTC  1073
      ||||||||||||||||||||||||
seq2  GCTGAAGAGCGACTATCAGAATTC  1063

seq1: chr3_89508601_89509231
seq2: B6Ng01-084O15.g_122_753

seq1  GCTGCATTAACACATGGAAGTCTGTGAAAGAATCTCAAGAAAAAGTGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCATTAACACATGGAAGTCTGTGAAAGAATCTCAAGAAAAAGTGCCT  50

seq1  GCTGCTGTCCATGCTACATACAGCAGAGCTGACCCTCGAAGACACCCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGTCCATGCTACATACAGCAGAGCTGACCCTCGAAGACACCCTGG  100

seq1  TATGGCAAAGAAGCCATTATAAAAAATCTGGTATTGACACCAGGTGTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCAAAGAAGCCATTATAAAAAATCTGGTATTGACACCAGGTGTGGC  150

seq1  AGTCCATAACCCCAACACTGAGGATACTGAGGCAGGAGGATGGCTAGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCATAACCCCAACACTGAGGATACTGAGGCAGGAGGATGGCTAGTTT  200

seq1  CAGACTAGCCTGTGCACTTAGCAAGACTGATTCAAAAATCCAACAAGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTAGCCTGTGCACTTAGCAAGACTGATTCAAAAATCCAACAAGTGA  250

seq1  AACATACAATTCCACTAAAATGTAAAAGAGCTAGAATAGGCAAATCTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATACAATTCCACTAAAATGTAAAAGAGCTAGAATAGGCAAATCTATA  300

seq1  GAAATAGAAACCATATTAGTGGTGGCATAAGACTGGGCAGGGGGCTAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGAAACCATATTAGTGGTGGCATAAGACTGGGCAGGGGGCTAGGG  350

seq1  ACATGGTTTAGTGGTTAAGAGCATTAGTTGCTCTTCCAAAGGACCAGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTTTAGTGGTTAAGAGCATTAGTTGCTCTTCCAAAGGACCAGAGT  400

seq1  TCAATTCCCAACATCCTCTTCTGGCCTCCCTGAGCACCAGGCAAACACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCCCAACATCCTCTTCTGGCCTCCCTGAGCACCAGGCAAACACAT  450

seq1  AGTGCACAGACATACATATGGGTAAACACTCATATATACAAAATAAAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCACAGACATACATATGGGTAAACACTCATATATACAAAATAAAACT  500

seq1  TAAAAAAAAGACAGCTATAGTTGGCTCTTTAAAAAGACTGAGAAAGGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAGACAGCTATAGTTGGCTCTTTAAAAAGACTGAGAAAGGTTG  550

seq1  GTTTGGGGGGGATGGTGAGTCTGGAGTTTATTTTGACAAAAAATGATCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGGGGGGATGGTGAGTCTGGAGTTTATTTTGACAAAAAATGATCTG  600

seq1  GAGT-CAGCTTGTGGGTGCTGGCTGCACATCT  631
      | || |||||||||||||||||||||||||||
seq2  GTGTCCAGCTTGTGGGTGCTGGCTGCACATCT  632